RNA–Protein interactions for RNA: ENST00000471887.1

HDAC9-221, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 446 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-221ENST00000471887 PKDCCQ504Y2 493 aa10.65□□□□□ -0.7
HDAC9-221ENST00000471887 C14orf37Q86TY3 774 aa10.65□□□□□ -0.7
HDAC9-221ENST00000471887 FNBP4Q8N3X1 1017 aaPredicted RBP10.65□□□□□ -0.7
HDAC9-221ENST00000471887 KCTD15Q96SI1 283 aaPredicted RBP10.65□□□□□ -0.7
HDAC9-221ENST00000471887 ZMYND15Q9H091 742 aa10.65□□□□□ -0.7
HDAC9-221ENST00000471887 DGAT1O75907 488 aa10.64□□□□□ -0.71
HDAC9-221ENST00000471887 SOX11P35716 441 aa10.64□□□□□ -0.71
HDAC9-221ENST00000471887 ERICH6Q7L0X2 663 aa10.64□□□□□ -0.71
HDAC9-221ENST00000471887 SEMA3FQ13275 785 aa10.63□□□□□ -0.71
HDAC9-221ENST00000471887 NNTQ13423 1086 aa10.63□□□□□ -0.71
HDAC9-221ENST00000471887 SEPT12Q8IYM1 358 aa10.6□□□□□ -0.71
HDAC9-221ENST00000471887 HPS1Q92902 700 aa10.6□□□□□ -0.71
HDAC9-221ENST00000471887 POM121CA8CG34 1229 aa10.59□□□□□ -0.71
HDAC9-221ENST00000471887 ESPNB1AK53 854 aa10.59□□□□□ -0.71
HDAC9-221ENST00000471887 TRAK2O60296 914 aa10.59□□□□□ -0.71
HDAC9-221ENST00000471887 DHX9Q08211 1270 aaKnown RBP10.59□□□□□ -0.71
HDAC9-221ENST00000471887 INTS6LQ5JSJ4 861 aaKnown RBP10.59□□□□□ -0.71
HDAC9-221ENST00000471887 CCDC116Q8IYX3 515 aa10.59□□□□□ -0.71
HDAC9-221ENST00000471887 GIGYF1O75420 1035 aaPredicted RBP10.58□□□□□ -0.72
HDAC9-221ENST00000471887 AVPP01185 164 aa10.58□□□□□ -0.72
HDAC9-221ENST00000471887 NR3C2P08235 984 aa10.58□□□□□ -0.72
HDAC9-221ENST00000471887 RNF20Q5VTR2 975 aa10.58□□□□□ -0.72
HDAC9-221ENST00000471887 CEP126Q9P2H0 1117 aa10.58□□□□□ -0.72
HDAC9-221ENST00000471887 RAB15P59190 212 aa10.57□□□□□ -0.72
HDAC9-221ENST00000471887 Q6ZNB5 142 aa10.57□□□□□ -0.72
HDAC9-221ENST00000471887 CCDC125Q86Z20 511 aa10.57□□□□□ -0.72
HDAC9-221ENST00000471887 ALG2Q9H553 416 aa10.57□□□□□ -0.72
HDAC9-221ENST00000471887 EMILIN1Q9Y6C2 1016 aa10.56□□□□□ -0.72
HDAC9-221ENST00000471887 WDR4P57081 412 aaKnown RBP10.55□□□□□ -0.72
HDAC9-221ENST00000471887 CTC1Q2NKJ3 1217 aa10.55□□□□□ -0.72
HDAC9-221ENST00000471887 SLFNL1Q499Z3 407 aa10.55□□□□□ -0.72
HDAC9-221ENST00000471887 PPP1R26Q5T8A7 1209 aaPredicted RBP10.54□□□□□ -0.72
HDAC9-221ENST00000471887 HDGFL1Q5TGJ6 251 aa10.54□□□□□ -0.72
HDAC9-221ENST00000471887 TRIM52Q96A61 297 aa10.54□□□□□ -0.72
HDAC9-221ENST00000471887 PGPEP1Q9NXJ5 209 aa10.54□□□□□ -0.72
HDAC9-221ENST00000471887 ERVH48-1M5A8F1 160 aa10.53□□□□□ -0.72
HDAC9-221ENST00000471887 ADAMTS19Q8TE59 1207 aa10.53□□□□□ -0.72
HDAC9-221ENST00000471887 GLMNQ92990 594 aa10.53□□□□□ -0.72
HDAC9-221ENST00000471887 KLF16Q9BXK1 252 aaPredicted RBP10.53□□□□□ -0.72
HDAC9-221ENST00000471887 AXIN1O15169 862 aa10.52□□□□□ -0.73
HDAC9-221ENST00000471887 ZIC2O95409 532 aaPredicted RBP10.52□□□□□ -0.73
HDAC9-221ENST00000471887 TIMP2P16035 220 aa10.52□□□□□ -0.73
HDAC9-221ENST00000471887 SMCPP49901 116 aaPredicted RBP10.52□□□□□ -0.73
HDAC9-221ENST00000471887 MYT1Q01538 1121 aa10.52□□□□□ -0.73
HDAC9-221ENST00000471887 RNF135Q8IUD6 432 aa10.52□□□□□ -0.73
HDAC9-221ENST00000471887 CRIPAKQ8N1N5 446 aa10.52□□□□□ -0.73
HDAC9-221ENST00000471887 ITPKCQ96DU7 683 aa10.52□□□□□ -0.73
HDAC9-221ENST00000471887 ZNF777Q9ULD5 760 aaPredicted RBP10.52□□□□□ -0.73
HDAC9-221ENST00000471887 CAPN5O15484 640 aaPredicted RBP10.51□□□□□ -0.73
HDAC9-221ENST00000471887 CALR3Q96L12 384 aaKnown RBP10.51□□□□□ -0.73
HDAC9-221ENST00000471887 PHTF2Q8N3S3 785 aa10.5□□□□□ -0.73
HDAC9-221ENST00000471887 TIMELESSQ9UNS1 1208 aa10.5□□□□□ -0.73
HDAC9-221ENST00000471887 TRAF7Q6Q0C0 670 aa10.49□□□□□ -0.73
HDAC9-221ENST00000471887 ZNF784Q8NCA9 323 aaPredicted RBP10.49□□□□□ -0.73
HDAC9-221ENST00000471887 ZFAND3Q9H8U3 227 aa10.49□□□□□ -0.73
HDAC9-221ENST00000471887 TMPRSS4Q9NRS4 437 aa10.49□□□□□ -0.73
HDAC9-221ENST00000471887 PCDHB11Q9Y5F2 797 aa10.49□□□□□ -0.73
HDAC9-221ENST00000471887 AAASQ9NRG9 546 aa10.48□□□□□ -0.73
HDAC9-221ENST00000471887 ST8SIA5O15466 376 aa10.47□□□□□ -0.73
HDAC9-221ENST00000471887 MAP7D1Q3KQU3 841 aa10.47□□□□□ -0.73
HDAC9-221ENST00000471887 CCDC85AQ96PX6 553 aaPredicted RBP10.47□□□□□ -0.73
HDAC9-221ENST00000471887 DOLKQ9UPQ8 538 aa10.47□□□□□ -0.73
HDAC9-221ENST00000471887 PIK3CDO00329 1044 aa10.46□□□□□ -0.73
HDAC9-221ENST00000471887 PLPP7Q8NBV4 271 aa10.46□□□□□ -0.73
HDAC9-221ENST00000471887 NFATC2IPQ8NCF5 419 aa10.46□□□□□ -0.73
HDAC9-221ENST00000471887 CHIC2Q9UKJ5 165 aa10.46□□□□□ -0.73
HDAC9-221ENST00000471887 SKIP12755 728 aa10.45□□□□□ -0.74
HDAC9-221ENST00000471887 UCN2Q96RP3 112 aa10.45□□□□□ -0.74
HDAC9-221ENST00000471887 ESF1Q9H501 851 aaKnown RBP10.45□□□□□ -0.74
HDAC9-221ENST00000471887 CYLDQ9NQC7 956 aa10.45□□□□□ -0.74
HDAC9-221ENST00000471887 ERVK-9P63128 1117 aa10.44□□□□□ -0.74
HDAC9-221ENST00000471887 CC2D2BQ6DHV5 1058 aa10.44□□□□□ -0.74
HDAC9-221ENST00000471887 LILRA1O75019 489 aa10.43□□□□□ -0.74
HDAC9-221ENST00000471887 CBLBQ13191 982 aa10.43□□□□□ -0.74
HDAC9-221ENST00000471887 TSGA10IPQ3SY00 556 aa10.43□□□□□ -0.74
HDAC9-221ENST00000471887 Q6ZVU0 165 aa10.43□□□□□ -0.74
HDAC9-221ENST00000471887 MEIOBQ8N635 442 aa10.43□□□□□ -0.74
HDAC9-221ENST00000471887 CDCA7Q9BWT1 371 aaPredicted RBP10.43□□□□□ -0.74
HDAC9-221ENST00000471887 LCE2BO14633 110 aa10.42□□□□□ -0.74
HDAC9-221ENST00000471887 MYCP01106 439 aaPredicted RBP10.42□□□□□ -0.74
HDAC9-221ENST00000471887 USP4Q13107 963 aa10.42□□□□□ -0.74
HDAC9-221ENST00000471887 OXLD1Q5BKU9 147 aa10.42□□□□□ -0.74
HDAC9-221ENST00000471887 SIRT1Q96EB6 747 aa10.42□□□□□ -0.74
HDAC9-221ENST00000471887 ARID3CA6NKF2 412 aa10.41□□□□□ -0.74
HDAC9-221ENST00000471887 ATP9BO43861 1147 aa10.41□□□□□ -0.74
HDAC9-221ENST00000471887 LZTS3O60299 673 aaPredicted RBP10.41□□□□□ -0.74
HDAC9-221ENST00000471887 UPP2O95045 317 aa10.41□□□□□ -0.74
HDAC9-221ENST00000471887 SCTRP47872 440 aa10.41□□□□□ -0.74
HDAC9-221ENST00000471887 MRPL14Q6P1L8 145 aaKnown RBP10.41□□□□□ -0.74
HDAC9-221ENST00000471887 TBC1D9Q6ZT07 1266 aa10.41□□□□□ -0.74
HDAC9-221ENST00000471887 USP17L5A8MUK1 530 aa10.4□□□□□ -0.74
HDAC9-221ENST00000471887 ADH1AP07327 375 aa10.4□□□□□ -0.74
HDAC9-221ENST00000471887 BMP1P13497 986 aa10.4□□□□□ -0.74
HDAC9-221ENST00000471887 ADD1P35611 737 aaKnown RBP10.4□□□□□ -0.74
HDAC9-221ENST00000471887 TSEN34Q9BSV6 310 aaKnown RBP10.4□□□□□ -0.74
HDAC9-221ENST00000471887 ATP13A2Q9NQ11 1180 aa10.4□□□□□ -0.74
HDAC9-221ENST00000471887 SCARF1Q14162 830 aa10.39□□□□□ -0.75
HDAC9-221ENST00000471887 EML3Q32P44 896 aa10.39□□□□□ -0.75
HDAC9-221ENST00000471887 LINC00528Q8N1L1 170 aa10.39□□□□□ -0.75
HDAC9-221ENST00000471887 PPP1R12CQ9BZL4 782 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms