RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 FDX1P10109 184 aa6.53□□□□□ -1.36
COL3A1-205ENST00000470167 SATB1Q01826 763 aa6.53□□□□□ -1.36
COL3A1-205ENST00000470167 NUTM2DQ5VT03 806 aaPredicted RBP6.53□□□□□ -1.36
COL3A1-205ENST00000470167 NOL8Q76FK4 1167 aaKnown RBP6.53□□□□□ -1.36
COL3A1-205ENST00000470167 NUTM2AQ8IVF1 878 aaPredicted RBP6.53□□□□□ -1.36
COL3A1-205ENST00000470167 ZNF687Q8N1G0 1237 aa6.53□□□□□ -1.36
COL3A1-205ENST00000470167 FNBP4Q8N3X1 1017 aaPredicted RBP6.53□□□□□ -1.36
COL3A1-205ENST00000470167 CCDC82Q8N4S0 544 aa6.53□□□□□ -1.36
COL3A1-205ENST00000470167 PCDHGC3Q9UN70 934 aa6.53□□□□□ -1.36
COL3A1-205ENST00000470167 ZNF500O60304 480 aaPredicted RBP6.52□□□□□ -1.37
COL3A1-205ENST00000470167 CFHP08603 1231 aa6.52□□□□□ -1.37
COL3A1-205ENST00000470167 USP17L8P0C7I0 530 aa6.52□□□□□ -1.37
COL3A1-205ENST00000470167 SSR1P43307 286 aaKnown RBP6.52□□□□□ -1.37
COL3A1-205ENST00000470167 ANKRD13AQ8IZ07 590 aa6.52□□□□□ -1.37
COL3A1-205ENST00000470167 MSL3Q8N5Y2 521 aaKnown RBP6.52□□□□□ -1.37
COL3A1-205ENST00000470167 MTA3Q9BTC8 594 aa6.52□□□□□ -1.37
COL3A1-205ENST00000470167 ZBTB3Q9H5J0 574 aa6.52□□□□□ -1.37
COL3A1-205ENST00000470167 POTEB3A0JP26 581 aa6.51□□□□□ -1.37
COL3A1-205ENST00000470167 TPD52L2O43399 206 aaKnown RBP6.51□□□□□ -1.37
COL3A1-205ENST00000470167 HDGFP51858 240 aaKnown RBP6.51□□□□□ -1.37
COL3A1-205ENST00000470167 FUT2Q10981 343 aa6.51□□□□□ -1.37
COL3A1-205ENST00000470167 PRPF38BQ5VTL8 546 aaKnown RBP6.51□□□□□ -1.37
COL3A1-205ENST00000470167 POTEBQ6S5H4 581 aa6.51□□□□□ -1.37
COL3A1-205ENST00000470167 SLF2Q8IX21 1173 aa6.51□□□□□ -1.37
COL3A1-205ENST00000470167 NGEFQ8N5V2 710 aa6.51□□□□□ -1.37
COL3A1-205ENST00000470167 NBPF3Q9H094 633 aa6.51□□□□□ -1.37
COL3A1-205ENST00000470167 GDPD2Q9HCC8 539 aa6.51□□□□□ -1.37
COL3A1-205ENST00000470167 ZNF777Q9ULD5 760 aaPredicted RBP6.51□□□□□ -1.37
COL3A1-205ENST00000470167 BHMG1C9JSJ3 638 aaPredicted RBP6.5□□□□□ -1.37
COL3A1-205ENST00000470167 LETM1O95202 739 aaPredicted RBP6.5□□□□□ -1.37
COL3A1-205ENST00000470167 TNNT2P45379 298 aaPredicted RBP6.5□□□□□ -1.37
COL3A1-205ENST00000470167 SLC4A3P48751 1232 aa6.5□□□□□ -1.37
COL3A1-205ENST00000470167 DNTTIP2Q5QJE6 756 aaKnown RBP6.5□□□□□ -1.37
COL3A1-205ENST00000470167 LAPTM4BQ86VI4 370 aa6.5□□□□□ -1.37
COL3A1-205ENST00000470167 HS3ST6Q96QI5 342 aa6.5□□□□□ -1.37
COL3A1-205ENST00000470167 GTPBP4Q9BZE4 634 aaKnown RBP6.5□□□□□ -1.37
COL3A1-205ENST00000470167 RBM28Q9NW13 759 aaKnown RBP6.5□□□□□ -1.37
COL3A1-205ENST00000470167 RPS6KL1Q9Y6S9 549 aa6.5□□□□□ -1.37
COL3A1-205ENST00000470167 MCCD1P59942 119 aaPredicted RBP6.49□□□□□ -1.37
COL3A1-205ENST00000470167 DDX46Q7L014 1031 aaKnown RBP6.49□□□□□ -1.37
COL3A1-205ENST00000470167 MTERF4Q7Z6M4 381 aaKnown RBP6.49□□□□□ -1.37
COL3A1-205ENST00000470167 CACTIN-AS1Q8N1I8 211 aa6.49□□□□□ -1.37
COL3A1-205ENST00000470167 ZFRQ96KR1 1074 aaKnown RBP6.49□□□□□ -1.37
COL3A1-205ENST00000470167 TBC1D2BQ9UPU7 963 aa6.49□□□□□ -1.37
COL3A1-205ENST00000470167 ZC3H4Q9UPT8 1303 aaKnown RBP6.49□□□□□ -1.37
COL3A1-205ENST00000470167 ABL2P42684 1182 aa6.48□□□□□ -1.37
COL3A1-205ENST00000470167 MTMR2Q13614 643 aa6.48□□□□□ -1.37
COL3A1-205ENST00000470167 GORABQ5T7V8 394 aa6.48□□□□□ -1.37
COL3A1-205ENST00000470167 KRBA2Q6ZNG9 492 aa6.48□□□□□ -1.37
COL3A1-205ENST00000470167 ARMCX6Q7L4S7 300 aa6.48□□□□□ -1.37
COL3A1-205ENST00000470167 APBB1IPQ7Z5R6 666 aaPredicted RBP6.48□□□□□ -1.37
COL3A1-205ENST00000470167 AEBP1Q8IUX7 1158 aa6.48□□□□□ -1.37
COL3A1-205ENST00000470167 TSC1Q92574 1164 aa6.48□□□□□ -1.37
COL3A1-205ENST00000470167 GZF1Q9H116 711 aaPredicted RBP6.48□□□□□ -1.37
COL3A1-205ENST00000470167 PNNQ9H307 717 aaKnown RBP6.48□□□□□ -1.37
COL3A1-205ENST00000470167 PPME1Q9Y570 386 aa6.48□□□□□ -1.37
COL3A1-205ENST00000470167 TK2O00142 265 aa6.47□□□□□ -1.37
COL3A1-205ENST00000470167 SOCS7O14512 581 aa6.47□□□□□ -1.37
COL3A1-205ENST00000470167 ANP32CO43423 234 aa6.47□□□□□ -1.37
COL3A1-205ENST00000470167 MARCH6O60337 910 aa6.47□□□□□ -1.37
COL3A1-205ENST00000470167 SCP2P22307 547 aa6.47□□□□□ -1.37
COL3A1-205ENST00000470167 UVSSAQ2YD98 709 aa6.47□□□□□ -1.37
COL3A1-205ENST00000470167 DNAJC14Q6Y2X3 702 aaPredicted RBP6.47□□□□□ -1.37
COL3A1-205ENST00000470167 MPNDQ8N594 471 aa6.47□□□□□ -1.37
COL3A1-205ENST00000470167 MRPL50Q8N5N7 158 aaKnown RBP6.47□□□□□ -1.37
COL3A1-205ENST00000470167 SPATA32Q96LK8 384 aa6.47□□□□□ -1.37
COL3A1-205ENST00000470167 UBA5Q9GZZ9 404 aa6.47□□□□□ -1.37
COL3A1-205ENST00000470167 HMX1Q9NP08 348 aaPredicted RBP6.47□□□□□ -1.37
COL3A1-205ENST00000470167 SUGT1Q9Y2Z0 365 aa6.47□□□□□ -1.37
COL3A1-205ENST00000470167 ZNF330Q9Y3S2 320 aaPredicted RBP6.47□□□□□ -1.37
COL3A1-205ENST00000470167 CFAP99D6REC4 459 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 C6orf229H3BNL8 230 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 CCER2I3L3R5 266 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 EXOC5O00471 708 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 SSFA2P28290 1259 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 POLD1P28340 1107 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 LSM11P83369 360 aaKnown RBP eCLIP6.46□□□□□ -1.38
COL3A1-205ENST00000470167 CTDSPL2Q05D32 466 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 ADGRD1Q6QNK2 874 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 HELBQ8NG08 1087 aaPredicted RBP6.46□□□□□ -1.38
COL3A1-205ENST00000470167 SNRNP27Q8WVK2 155 aaKnown RBP6.46□□□□□ -1.38
COL3A1-205ENST00000470167 SYMPKQ92797 1274 aaKnown RBP6.46□□□□□ -1.38
COL3A1-205ENST00000470167 ITFG2Q969R8 447 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 LRCH3Q96II8 777 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 GJD4Q96KN9 370 aaPredicted RBP6.46□□□□□ -1.38
COL3A1-205ENST00000470167 CEP126Q9P2H0 1117 aa6.46□□□□□ -1.38
COL3A1-205ENST00000470167 GOLGA6CA6NDK9 693 aa6.45□□□□□ -1.38
COL3A1-205ENST00000470167 GOLGA6BA6NDN3 693 aa6.45□□□□□ -1.38
COL3A1-205ENST00000470167 HMGB1P1B2RPK0 211 aaPredicted RBP6.45□□□□□ -1.38
COL3A1-205ENST00000470167 ZRANB2O95218 330 aaKnown RBP eCLIP6.45□□□□□ -1.38
COL3A1-205ENST00000470167 GOLGA6DP0CG33 693 aa6.45□□□□□ -1.38
COL3A1-205ENST00000470167 ATP6V1AP38606 617 aa6.45□□□□□ -1.38
COL3A1-205ENST00000470167 TERF1P54274 439 aa6.45□□□□□ -1.38
COL3A1-205ENST00000470167 FOXD4Q12950 439 aaPredicted RBP6.45□□□□□ -1.38
COL3A1-205ENST00000470167 PUS10Q3MIT2 529 aaKnown RBP6.45□□□□□ -1.38
COL3A1-205ENST00000470167 KMT5BQ4FZB7 885 aa6.45□□□□□ -1.38
COL3A1-205ENST00000470167 FAM210AQ96ND0 272 aa6.45□□□□□ -1.38
COL3A1-205ENST00000470167 GOLGA6AQ9NYA3 693 aa6.45□□□□□ -1.38
COL3A1-205ENST00000470167 ZHX1Q9UKY1 873 aaPredicted RBP6.45□□□□□ -1.38
COL3A1-205ENST00000470167 POM121CA8CG34 1229 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms