RNA–Protein interactions for RNA: ENST00000468723.1

GPNMB-207, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 808 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-207ENST00000468723 PCDHB9Q9Y5E1 797 aa8.43□□□□□ -1.06
GPNMB-207ENST00000468723 POTECB2RU33 542 aa8.41□□□□□ -1.06
GPNMB-207ENST00000468723 TIMP2P16035 220 aa8.41□□□□□ -1.06
GPNMB-207ENST00000468723 NR1H3Q13133 447 aa8.41□□□□□ -1.06
GPNMB-207ENST00000468723 ITPKCQ96DU7 683 aa8.41□□□□□ -1.06
GPNMB-207ENST00000468723 ZFAND3Q9H8U3 227 aa8.41□□□□□ -1.06
GPNMB-207ENST00000468723 ZIC2O95409 532 aaPredicted RBP8.4□□□□□ -1.06
GPNMB-207ENST00000468723 ZNF787Q6DD87 383 aa8.4□□□□□ -1.06
GPNMB-207ENST00000468723 CCDC116Q8IYX3 515 aa8.4□□□□□ -1.06
GPNMB-207ENST00000468723 CDV3Q9UKY7 258 aaKnown RBP8.4□□□□□ -1.06
GPNMB-207ENST00000468723 BMP1P13497 986 aa8.39□□□□□ -1.07
GPNMB-207ENST00000468723 IRF5Q13568 498 aa8.39□□□□□ -1.07
GPNMB-207ENST00000468723 INTS6LQ5JSJ4 861 aaKnown RBP8.39□□□□□ -1.07
GPNMB-207ENST00000468723 POM121Q96HA1 1249 aa8.39□□□□□ -1.07
GPNMB-207ENST00000468723 KLF16Q9BXK1 252 aaPredicted RBP8.39□□□□□ -1.07
GPNMB-207ENST00000468723 ATP13A2Q9NQ11 1180 aa8.39□□□□□ -1.07
GPNMB-207ENST00000468723 GMPR2Q9P2T1 348 aaKnown RBP8.39□□□□□ -1.07
GPNMB-207ENST00000468723 COG6Q9Y2V7 657 aa8.39□□□□□ -1.07
GPNMB-207ENST00000468723 FLIIQ13045 1269 aa8.38□□□□□ -1.07
GPNMB-207ENST00000468723 NBPF20Q3BBV1 942 aa8.38□□□□□ -1.07
GPNMB-207ENST00000468723 PPP1R26Q5T8A7 1209 aaPredicted RBP8.38□□□□□ -1.07
GPNMB-207ENST00000468723 VAC14Q08AM6 782 aa8.37□□□□□ -1.07
GPNMB-207ENST00000468723 ZNF330Q9Y3S2 320 aaPredicted RBP8.37□□□□□ -1.07
GPNMB-207ENST00000468723 GIGYF1O75420 1035 aaPredicted RBP8.36□□□□□ -1.07
GPNMB-207ENST00000468723 UBTFP17480 764 aaKnown RBP8.36□□□□□ -1.07
GPNMB-207ENST00000468723 TRIM46Q7Z4K8 759 aa8.36□□□□□ -1.07
GPNMB-207ENST00000468723 TMPRSS4Q9NRS4 437 aa8.36□□□□□ -1.07
GPNMB-207ENST00000468723 EMILIN1Q9Y6C2 1016 aa8.36□□□□□ -1.07
GPNMB-207ENST00000468723 ESPNB1AK53 854 aa8.34□□□□□ -1.07
GPNMB-207ENST00000468723 ERVH48-1M5A8F1 160 aa8.34□□□□□ -1.07
GPNMB-207ENST00000468723 RAD21O60216 631 aa8.34□□□□□ -1.07
GPNMB-207ENST00000468723 DHX9Q08211 1270 aaKnown RBP8.34□□□□□ -1.07
GPNMB-207ENST00000468723 CBLBQ13191 982 aa8.34□□□□□ -1.07
GPNMB-207ENST00000468723 PGPEP1Q9NXJ5 209 aa8.34□□□□□ -1.07
GPNMB-207ENST00000468723 C11orf95C9JLR9 678 aaPredicted RBP8.33□□□□□ -1.08
GPNMB-207ENST00000468723 C6orf118Q5T5N4 469 aa8.32□□□□□ -1.08
GPNMB-207ENST00000468723 MRPL14Q6P1L8 145 aaKnown RBP8.32□□□□□ -1.08
GPNMB-207ENST00000468723 CLUAP1Q96AJ1 413 aa8.32□□□□□ -1.08
GPNMB-207ENST00000468723 PURBQ96QR8 312 aaKnown RBP8.32□□□□□ -1.08
GPNMB-207ENST00000468723 MCCD1P59942 119 aaPredicted RBP8.31□□□□□ -1.08
GPNMB-207ENST00000468723 EIF4G2P78344 907 aaKnown RBP eCLIP8.31□□□□□ -1.08
GPNMB-207ENST00000468723 SCARF1Q14162 830 aa8.31□□□□□ -1.08
GPNMB-207ENST00000468723 WASHC4Q2M389 1173 aa8.31□□□□□ -1.08
GPNMB-207ENST00000468723 ZNF784Q8NCA9 323 aaPredicted RBP8.31□□□□□ -1.08
GPNMB-207ENST00000468723 ZFP42Q96MM3 310 aa8.31□□□□□ -1.08
GPNMB-207ENST00000468723 CEP126Q9P2H0 1117 aa8.31□□□□□ -1.08
GPNMB-207ENST00000468723 SNRPBP14678 240 aaKnown RBP8.3□□□□□ -1.08
GPNMB-207ENST00000468723 MEIOBQ8N635 442 aa8.3□□□□□ -1.08
GPNMB-207ENST00000468723 CYLDQ9NQC7 956 aa8.3□□□□□ -1.08
GPNMB-207ENST00000468723 SEPT12Q8IYM1 358 aa8.29□□□□□ -1.08
GPNMB-207ENST00000468723 ZNF592Q92610 1267 aa8.29□□□□□ -1.08
GPNMB-207ENST00000468723 AGBL1Q96MI9 1066 aa8.29□□□□□ -1.08
GPNMB-207ENST00000468723 SENP2Q9HC62 589 aa8.29□□□□□ -1.08
GPNMB-207ENST00000468723 UPP2O95045 317 aa8.28□□□□□ -1.08
GPNMB-207ENST00000468723 BMP2P12643 396 aa8.28□□□□□ -1.08
GPNMB-207ENST00000468723 ADD1P35611 737 aaKnown RBP8.28□□□□□ -1.08
GPNMB-207ENST00000468723 RNF20Q5VTR2 975 aa8.28□□□□□ -1.08
GPNMB-207ENST00000468723 LINC00528Q8N1L1 170 aa8.28□□□□□ -1.08
GPNMB-207ENST00000468723 TRIM47Q96LD4 638 aa8.28□□□□□ -1.08
GPNMB-207ENST00000468723 PCDHB11Q9Y5F2 797 aa8.28□□□□□ -1.08
GPNMB-207ENST00000468723 LILRA1O75019 489 aa8.27□□□□□ -1.09
GPNMB-207ENST00000468723 RELBQ01201 579 aa8.27□□□□□ -1.09
GPNMB-207ENST00000468723 SEMA3FQ13275 785 aa8.27□□□□□ -1.09
GPNMB-207ENST00000468723 Q6ZVU0 165 aa8.27□□□□□ -1.09
GPNMB-207ENST00000468723 WWC1Q8IX03 1113 aa8.27□□□□□ -1.09
GPNMB-207ENST00000468723 TSGA10IPQ3SY00 556 aa8.26□□□□□ -1.09
GPNMB-207ENST00000468723 KIFC2Q96AC6 838 aa8.26□□□□□ -1.09
GPNMB-207ENST00000468723 CCDC85AQ96PX6 553 aaPredicted RBP8.26□□□□□ -1.09
GPNMB-207ENST00000468723 TSEN34Q9BSV6 310 aaKnown RBP8.26□□□□□ -1.09
GPNMB-207ENST00000468723 SOBPA7XYQ1 873 aa8.25□□□□□ -1.09
GPNMB-207ENST00000468723 POM121CA8CG34 1229 aa8.25□□□□□ -1.09
GPNMB-207ENST00000468723 SLFNL1Q499Z3 407 aa8.25□□□□□ -1.09
GPNMB-207ENST00000468723 CDCA7Q9BWT1 371 aaPredicted RBP8.25□□□□□ -1.09
GPNMB-207ENST00000468723 ZNF395Q9H8N7 513 aaPredicted RBP8.25□□□□□ -1.09
GPNMB-207ENST00000468723 SCTRP47872 440 aa8.24□□□□□ -1.09
GPNMB-207ENST00000468723 RNF135Q8IUD6 432 aa8.24□□□□□ -1.09
GPNMB-207ENST00000468723 ADH1AP07327 375 aa8.23□□□□□ -1.09
GPNMB-207ENST00000468723 PHTF2Q8N3S3 785 aa8.23□□□□□ -1.09
GPNMB-207ENST00000468723 ZNF775Q96BV0 537 aaPredicted RBP8.23□□□□□ -1.09
GPNMB-207ENST00000468723 FIGNL2A6NMB9 653 aa8.22□□□□□ -1.09
GPNMB-207ENST00000468723 SOX11P35716 441 aa8.22□□□□□ -1.09
GPNMB-207ENST00000468723 CC2D2BQ6DHV5 1058 aa8.22□□□□□ -1.09
GPNMB-207ENST00000468723 PROSER2Q86WR7 435 aaPredicted RBP8.22□□□□□ -1.09
GPNMB-207ENST00000468723 KDF1Q8NAX2 398 aaPredicted RBP8.22□□□□□ -1.09
GPNMB-207ENST00000468723 ESF1Q9H501 851 aaKnown RBP8.22□□□□□ -1.09
GPNMB-207ENST00000468723 ALG2Q9H553 416 aa8.22□□□□□ -1.09
GPNMB-207ENST00000468723 PIK3CDO00329 1044 aa8.21□□□□□ -1.1
GPNMB-207ENST00000468723 PTGIRP43119 386 aa8.21□□□□□ -1.1
GPNMB-207ENST00000468723 ERVK-9P63128 1117 aa8.21□□□□□ -1.1
GPNMB-207ENST00000468723 CCDC125Q86Z20 511 aa8.21□□□□□ -1.1
GPNMB-207ENST00000468723 INSM2Q96T92 566 aaPredicted RBP8.21□□□□□ -1.1
GPNMB-207ENST00000468723 DOLKQ9UPQ8 538 aa8.21□□□□□ -1.1
GPNMB-207ENST00000468723 GTF3C3Q9Y5Q9 886 aa8.21□□□□□ -1.1
GPNMB-207ENST00000468723 TTLL8A6PVC2 850 aa8.2□□□□□ -1.1
GPNMB-207ENST00000468723 SPINT1O43278 529 aa8.2□□□□□ -1.1
GPNMB-207ENST00000468723 MAN1A2O60476 641 aa8.2□□□□□ -1.1
GPNMB-207ENST00000468723 CTSOP43234 321 aaPredicted RBP8.2□□□□□ -1.1
GPNMB-207ENST00000468723 OXLD1Q5BKU9 147 aa8.2□□□□□ -1.1
GPNMB-207ENST00000468723 HDGFL1Q5TGJ6 251 aa8.2□□□□□ -1.1
GPNMB-207ENST00000468723 ADAMTS19Q8TE59 1207 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms