RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	PKD1L3	Q7Z443	1732 aa		11.46	□□□□□ -0.57
SYNE1-215	ENST00000460912	AATK	Q6ZMQ8	1374 aa		11.46	□□□□□ -0.57
SYNE1-215	ENST00000460912	MTHFS	P49914	203 aa		11.46	□□□□□ -0.57
SYNE1-215	ENST00000460912	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.46	□□□□□ -0.57
SYNE1-215	ENST00000460912	IL16	Q14005	1332 aa		11.45	□□□□□ -0.58
SYNE1-215	ENST00000460912	TCP11L2	Q8N4U5	519 aa		11.45	□□□□□ -0.58
SYNE1-215	ENST00000460912	BRPF1	P55201	1214 aa	Predicted RBP	11.45	□□□□□ -0.58
SYNE1-215	ENST00000460912	AAMP	Q13685	434 aa		11.45	□□□□□ -0.58
SYNE1-215	ENST00000460912	TMEM94	Q12767	1356 aa		11.44	□□□□□ -0.58
SYNE1-215	ENST00000460912	PHLPP1	O60346	1717 aa		11.44	□□□□□ -0.58
SYNE1-215	ENST00000460912	RLBP1	P12271	317 aa		11.44	□□□□□ -0.58
SYNE1-215	ENST00000460912	HSPA2	P54652	639 aa		11.44	□□□□□ -0.58
SYNE1-215	ENST00000460912	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.44	□□□□□ -0.58
SYNE1-215	ENST00000460912	CABP2	Q9NPB3	220 aa		11.44	□□□□□ -0.58
SYNE1-215	ENST00000460912	PARP4	Q9UKK3	1724 aa	Known RBP	11.43	□□□□□ -0.58
SYNE1-215	ENST00000460912	CT47B1	P0C2W7	299 aa	Predicted RBP	11.42	□□□□□ -0.58
SYNE1-215	ENST00000460912	MORC1	Q86VD1	984 aa		11.42	□□□□□ -0.58
SYNE1-215	ENST00000460912	MINK1	Q8N4C8	1332 aa	Predicted RBP	11.42	□□□□□ -0.58
SYNE1-215	ENST00000460912	NUDT16	Q96DE0	195 aa	Known RBP	11.42	□□□□□ -0.58
SYNE1-215	ENST00000460912	STK26	Q9P289	416 aa		11.42	□□□□□ -0.58
SYNE1-215	ENST00000460912	NWD2	Q9ULI1	1742 aa		11.42	□□□□□ -0.58
SYNE1-215	ENST00000460912	TNN	Q9UQP3	1299 aa		11.41	□□□□□ -0.58
SYNE1-215	ENST00000460912	SBNO1	A3KN83	1393 aa		11.4	□□□□□ -0.58
SYNE1-215	ENST00000460912	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.4	□□□□□ -0.58
SYNE1-215	ENST00000460912	PCDHB15	Q9Y5E8	787 aa		11.4	□□□□□ -0.58
SYNE1-215	ENST00000460912	CLUAP1	Q96AJ1	413 aa		11.39	□□□□□ -0.59
SYNE1-215	ENST00000460912	RSPH6A	Q9H0K4	717 aa		11.39	□□□□□ -0.59
SYNE1-215	ENST00000460912	FAM161A	Q3B820	660 aa		11.39	□□□□□ -0.59
SYNE1-215	ENST00000460912	CCDC61	Q9Y6R9	512 aa		11.39	□□□□□ -0.59
SYNE1-215	ENST00000460912	PAPPA	Q13219	1627 aa		11.38	□□□□□ -0.59
SYNE1-215	ENST00000460912	ZNF853	P0CG23	659 aa		11.38	□□□□□ -0.59
SYNE1-215	ENST00000460912	COL14A1	Q05707	1796 aa	Known RBP	11.38	□□□□□ -0.59
SYNE1-215	ENST00000460912	RGS12	O14924	1447 aa		11.38	□□□□□ -0.59
SYNE1-215	ENST00000460912	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	11.38	□□□□□ -0.59
SYNE1-215	ENST00000460912	TMPO	P42166	694 aa	Known RBP	11.37	□□□□□ -0.59
SYNE1-215	ENST00000460912	CABP1	Q9NZU7	370 aa		11.37	□□□□□ -0.59
SYNE1-215	ENST00000460912	KIF24	Q5T7B8	1368 aa		11.36	□□□□□ -0.59
SYNE1-215	ENST00000460912	POLK	Q9UBT6	870 aa		11.36	□□□□□ -0.59
SYNE1-215	ENST00000460912	ACE	P12821	1306 aa		11.36	□□□□□ -0.59
SYNE1-215	ENST00000460912	TTC21A	Q8NDW8	1320 aa		11.36	□□□□□ -0.59
SYNE1-215	ENST00000460912	GLI3	P10071	1580 aa		11.36	□□□□□ -0.59
SYNE1-215	ENST00000460912	ANP32A	P39687	249 aa	Known RBP	11.36	□□□□□ -0.59
SYNE1-215	ENST00000460912	PANK1	Q8TE04	598 aa		11.36	□□□□□ -0.59
SYNE1-215	ENST00000460912	C19orf44	Q9H6X5	657 aa		11.35	□□□□□ -0.59
SYNE1-215	ENST00000460912	KDM3B	Q7LBC6	1761 aa		11.35	□□□□□ -0.59
SYNE1-215	ENST00000460912	IL13	P35225	146 aa		11.35	□□□□□ -0.59
SYNE1-215	ENST00000460912	POGK	Q9P215	609 aa		11.34	□□□□□ -0.59
SYNE1-215	ENST00000460912	TTC21B	Q7Z4L5	1316 aa		11.34	□□□□□ -0.59
SYNE1-215	ENST00000460912	CIC	Q96RK0	1608 aa	Predicted RBP	11.34	□□□□□ -0.59
SYNE1-215	ENST00000460912	TNS3	Q68CZ2	1445 aa		11.34	□□□□□ -0.59
SYNE1-215	ENST00000460912	SEC24B	O95487	1268 aa		11.34	□□□□□ -0.59
SYNE1-215	ENST00000460912	HDAC1	Q13547	482 aa	Predicted RBP	11.34	□□□□□ -0.59
SYNE1-215	ENST00000460912	CACNA1F	O60840	1977 aa		11.34	□□□□□ -0.59
SYNE1-215	ENST00000460912	SOS2	Q07890	1332 aa	Predicted RBP	11.34	□□□□□ -0.59
SYNE1-215	ENST00000460912	SCN11A	Q9UI33	1791 aa		11.34	□□□□□ -0.59
SYNE1-215	ENST00000460912	MVP	Q14764	893 aa	Known RBP	11.33	□□□□□ -0.59
SYNE1-215	ENST00000460912	ZNF692	Q9BU19	519 aa	Predicted RBP	11.33	□□□□□ -0.59
SYNE1-215	ENST00000460912	RRP7A	Q9Y3A4	280 aa	Known RBP	11.33	□□□□□ -0.6
SYNE1-215	ENST00000460912	USP35	Q9P2H5	1018 aa		11.32	□□□□□ -0.6
SYNE1-215	ENST00000460912	UBR2	Q8IWV8	1755 aa		11.32	□□□□□ -0.6
SYNE1-215	ENST00000460912	GGNBP2	Q9H3C7	697 aa		11.32	□□□□□ -0.6
SYNE1-215	ENST00000460912	RTL1	A6NKG5	1358 aa		11.32	□□□□□ -0.6
SYNE1-215	ENST00000460912	PLEKHG2	Q9H7P9	1386 aa		11.32	□□□□□ -0.6
SYNE1-215	ENST00000460912	FCHSD2	O94868	740 aa		11.32	□□□□□ -0.6
SYNE1-215	ENST00000460912	MAPK8IP3	Q9UPT6	1336 aa		11.31	□□□□□ -0.6
SYNE1-215	ENST00000460912	ANTXR1	Q9H6X2	564 aa		11.31	□□□□□ -0.6
SYNE1-215	ENST00000460912	TOGARAM1	Q9Y4F4	1720 aa		11.31	□□□□□ -0.6
SYNE1-215	ENST00000460912	TERF2IP	Q9NYB0	399 aa		11.31	□□□□□ -0.6
SYNE1-215	ENST00000460912	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.31	□□□□□ -0.6
SYNE1-215	ENST00000460912	COG6	Q9Y2V7	657 aa		11.31	□□□□□ -0.6
SYNE1-215	ENST00000460912	TRIM27	P14373	513 aa		11.31	□□□□□ -0.6
SYNE1-215	ENST00000460912	ZBTB40	Q9NUA8	1239 aa		11.31	□□□□□ -0.6
SYNE1-215	ENST00000460912	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
SYNE1-215	ENST00000460912	ALDH1L2	Q3SY69	923 aa		11.3	□□□□□ -0.6
SYNE1-215	ENST00000460912	CFAP53	Q96M91	514 aa		11.3	□□□□□ -0.6
SYNE1-215	ENST00000460912	MYH16	Q9H6N6	1097 aa		11.3	□□□□□ -0.6
SYNE1-215	ENST00000460912	CPD	O75976	1380 aa		11.3	□□□□□ -0.6
SYNE1-215	ENST00000460912	SMC5	Q8IY18	1101 aa		11.3	□□□□□ -0.6
SYNE1-215	ENST00000460912	PLPPR3	Q6T4P5	718 aa		11.3	□□□□□ -0.6
SYNE1-215	ENST00000460912	CRB1	P82279	1406 aa		11.29	□□□□□ -0.6
SYNE1-215	ENST00000460912	SSH1	Q8WYL5	1049 aa		11.29	□□□□□ -0.6
SYNE1-215	ENST00000460912	KDR	P35968	1356 aa		11.29	□□□□□ -0.6
SYNE1-215	ENST00000460912	MSH6	P52701	1360 aa		11.29	□□□□□ -0.6
SYNE1-215	ENST00000460912	ABCC4	O15439	1325 aa		11.29	□□□□□ -0.6
SYNE1-215	ENST00000460912	BRINP3	Q76B58	766 aa		11.28	□□□□□ -0.6
SYNE1-215	ENST00000460912	THSD7A	Q9UPZ6	1657 aa		11.28	□□□□□ -0.6
SYNE1-215	ENST00000460912	PLEKHG5	O94827	1062 aa		11.28	□□□□□ -0.6
SYNE1-215	ENST00000460912	DEK	P35659	375 aa	Known RBP	11.28	□□□□□ -0.6
SYNE1-215	ENST00000460912	TNNT2	P45379	298 aa	Predicted RBP	11.28	□□□□□ -0.6
SYNE1-215	ENST00000460912	SRPK2	P78362	688 aa	Known RBP	11.28	□□□□□ -0.6
SYNE1-215	ENST00000460912	TSR2	Q969E8	191 aa	Known RBP	11.28	□□□□□ -0.6
SYNE1-215	ENST00000460912	PHACTR3	Q96KR7	559 aa		11.28	□□□□□ -0.6
SYNE1-215	ENST00000460912	DDIT3	P35638	169 aa		11.27	□□□□□ -0.6
SYNE1-215	ENST00000460912	SENP3	Q9H4L4	574 aa	Predicted RBP	11.27	□□□□□ -0.6
SYNE1-215	ENST00000460912	ZRANB1	Q9UGI0	708 aa		11.27	□□□□□ -0.6
SYNE1-215	ENST00000460912	ATP10D	Q9P241	1426 aa		11.27	□□□□□ -0.61
SYNE1-215	ENST00000460912	EXOSC9	Q06265	439 aa	Known RBP	11.27	□□□□□ -0.61
SYNE1-215	ENST00000460912	ZNF428	Q96B54	188 aa		11.27	□□□□□ -0.61
SYNE1-215	ENST00000460912	DDRGK1	Q96HY6	314 aa		11.27	□□□□□ -0.61
SYNE1-215	ENST00000460912	TBC1D32	Q96NH3	1257 aa		11.27	□□□□□ -0.61

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