RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 RABEP1Q15276 862 aa14.39□□□□□ -0.11
CPSF3-202ENST00000460593 USP26Q9BXU7 913 aa14.39□□□□□ -0.11
CPSF3-202ENST00000460593 CFAP74Q9C0B2 1584 aa14.39□□□□□ -0.11
CPSF3-202ENST00000460593 HS1BP3Q53T59 392 aa14.38□□□□□ -0.11
CPSF3-202ENST00000460593 GCC1Q96CN9 775 aa14.38□□□□□ -0.11
CPSF3-202ENST00000460593 IGSF3O75054 1194 aa14.38□□□□□ -0.11
CPSF3-202ENST00000460593 HMOX1P09601 288 aa14.38□□□□□ -0.11
CPSF3-202ENST00000460593 SMAP1Q8IYB5 467 aaPredicted RBP14.37□□□□□ -0.11
CPSF3-202ENST00000460593 CCDC39Q9UFE4 941 aa14.37□□□□□ -0.11
CPSF3-202ENST00000460593 ABCC11Q96J66 1382 aa14.37□□□□□ -0.11
CPSF3-202ENST00000460593 STK26Q9P289 416 aa14.37□□□□□ -0.11
CPSF3-202ENST00000460593 ZNF710Q8N1W2 664 aa14.36□□□□□ -0.11
CPSF3-202ENST00000460593 TTC12Q9H892 705 aaPredicted RBP14.36□□□□□ -0.11
CPSF3-202ENST00000460593 DTNBO60941 627 aa14.36□□□□□ -0.11
CPSF3-202ENST00000460593 CSPP1Q1MSJ5 1256 aa14.36□□□□□ -0.11
CPSF3-202ENST00000460593 MRPL50Q8N5N7 158 aaKnown RBP14.36□□□□□ -0.11
CPSF3-202ENST00000460593 STAC3Q96MF2 364 aa14.36□□□□□ -0.11
CPSF3-202ENST00000460593 MAP3K4Q9Y6R4 1608 aa14.35□□□□□ -0.11
CPSF3-202ENST00000460593 SPDYE4A6NLX3 237 aa14.35□□□□□ -0.11
CPSF3-202ENST00000460593 PRKAR2BP31323 418 aa14.35□□□□□ -0.11
CPSF3-202ENST00000460593 TSHZ3Q63HK5 1081 aa14.35□□□□□ -0.11
CPSF3-202ENST00000460593 PHACTR3Q96KR7 559 aa14.35□□□□□ -0.11
CPSF3-202ENST00000460593 SLC24A1O60721 1099 aa14.34□□□□□ -0.11
CPSF3-202ENST00000460593 GADD45BO75293 160 aaPredicted RBP14.34□□□□□ -0.11
CPSF3-202ENST00000460593 VAMP4O75379 141 aa14.34□□□□□ -0.11
CPSF3-202ENST00000460593 SDSP20132 328 aa14.34□□□□□ -0.11
CPSF3-202ENST00000460593 TTC22Q5TAA0 569 aa14.34□□□□□ -0.11
CPSF3-202ENST00000460593 CCDC94Q9BW85 323 aaPredicted RBP14.34□□□□□ -0.11
CPSF3-202ENST00000460593 ZSCAN20P17040 1043 aaPredicted RBP14.34□□□□□ -0.11
CPSF3-202ENST00000460593 ATP2B3Q16720 1220 aa14.34□□□□□ -0.11
CPSF3-202ENST00000460593 SRPK2P78362 688 aaKnown RBP14.34□□□□□ -0.11
CPSF3-202ENST00000460593 KIAA2012Q0VF49 1180 aa14.34□□□□□ -0.11
CPSF3-202ENST00000460593 USP25Q9UHP3 1055 aa14.34□□□□□ -0.11
CPSF3-202ENST00000460593 ADGRB2O60241 1585 aa14.33□□□□□ -0.11
CPSF3-202ENST00000460593 PLCB2Q00722 1185 aa14.33□□□□□ -0.12
CPSF3-202ENST00000460593 ALDH1L2Q3SY69 923 aa14.33□□□□□ -0.12
CPSF3-202ENST00000460593 ST18O60284 1047 aa14.32□□□□□ -0.12
CPSF3-202ENST00000460593 DIAPH1O60610 1272 aaKnown RBP14.32□□□□□ -0.12
CPSF3-202ENST00000460593 NEK4P51957 841 aa14.32□□□□□ -0.12
CPSF3-202ENST00000460593 BCL11BQ9C0K0 894 aaPredicted RBP14.32□□□□□ -0.12
CPSF3-202ENST00000460593 KRT24Q2M2I5 525 aa14.32□□□□□ -0.12
CPSF3-202ENST00000460593 PPP4R3BQ5MIZ7 849 aa14.31□□□□□ -0.12
CPSF3-202ENST00000460593 C8orf58Q8NAV2 365 aa14.31□□□□□ -0.12
CPSF3-202ENST00000460593 TSPY26PQ9H489 355 aa14.31□□□□□ -0.12
CPSF3-202ENST00000460593 DCTN1Q14203 1278 aa14.31□□□□□ -0.12
CPSF3-202ENST00000460593 CFAP65Q6ZU64 1925 aaKnown RBP14.31□□□□□ -0.12
CPSF3-202ENST00000460593 A0A1W2PP64 1363 aa14.31□□□□□ -0.12
CPSF3-202ENST00000460593 FAM83GA6ND36 823 aa14.3□□□□□ -0.12
CPSF3-202ENST00000460593 FYB1O15117 783 aa14.3□□□□□ -0.12
CPSF3-202ENST00000460593 DMTNQ08495 405 aa14.3□□□□□ -0.12
CPSF3-202ENST00000460593 INTS3Q68E01 1043 aaKnown RBP14.3□□□□□ -0.12
CPSF3-202ENST00000460593 MYRIPQ8NFW9 859 aa14.3□□□□□ -0.12
CPSF3-202ENST00000460593 SBNO2Q9Y2G9 1366 aa14.3□□□□□ -0.12
CPSF3-202ENST00000460593 TMX3Q96JJ7 454 aa14.3□□□□□ -0.12
CPSF3-202ENST00000460593 C14orf93Q9H972 538 aaKnown RBP14.3□□□□□ -0.12
CPSF3-202ENST00000460593 MBIPQ9NS73 344 aa14.3□□□□□ -0.12
CPSF3-202ENST00000460593 ANKRD36BQ8N2N9 1353 aa14.3□□□□□ -0.12
CPSF3-202ENST00000460593 IL16Q14005 1332 aa14.29□□□□□ -0.12
CPSF3-202ENST00000460593 EVC2Q86UK5 1308 aa14.29□□□□□ -0.12
CPSF3-202ENST00000460593 PLCH2O75038 1416 aa14.29□□□□□ -0.12
CPSF3-202ENST00000460593 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.29□□□□□ -0.12
CPSF3-202ENST00000460593 CWC22Q9HCG8 908 aaKnown RBP14.29□□□□□ -0.12
CPSF3-202ENST00000460593 MED14O60244 1454 aa14.28□□□□□ -0.12
CPSF3-202ENST00000460593 MCM5P33992 734 aa14.28□□□□□ -0.12
CPSF3-202ENST00000460593 NOLC1Q14978 699 aaKnown RBP eCLIP14.28□□□□□ -0.12
CPSF3-202ENST00000460593 MINK1Q8N4C8 1332 aaPredicted RBP14.28□□□□□ -0.12
CPSF3-202ENST00000460593 TWISTNBQ3B726 338 aaPredicted RBP14.28□□□□□ -0.12
CPSF3-202ENST00000460593 PALD1Q9ULE6 856 aa14.28□□□□□ -0.12
CPSF3-202ENST00000460593 MROH2AA6NES4 1674 aa14.28□□□□□ -0.12
CPSF3-202ENST00000460593 MTERF4Q7Z6M4 381 aaKnown RBP14.28□□□□□ -0.12
CPSF3-202ENST00000460593 LARP6Q9BRS8 491 aaKnown RBP14.28□□□□□ -0.12
CPSF3-202ENST00000460593 ARHGAP31Q2M1Z3 1444 aa14.28□□□□□ -0.12
CPSF3-202ENST00000460593 MYOM2P54296 1465 aa14.27□□□□□ -0.12
CPSF3-202ENST00000460593 QRICH2Q9H0J4 1663 aa14.27□□□□□ -0.12
CPSF3-202ENST00000460593 UPF3BQ9BZI7 483 aaKnown RBP14.27□□□□□ -0.12
CPSF3-202ENST00000460593 DCTPP1Q9H773 170 aa14.27□□□□□ -0.12
CPSF3-202ENST00000460593 HCLS1P14317 486 aaPredicted RBP14.27□□□□□ -0.13
CPSF3-202ENST00000460593 KIAA1210Q9ULL0 1709 aa14.27□□□□□ -0.13
CPSF3-202ENST00000460593 ADGRL1O94910 1474 aa14.27□□□□□ -0.13
CPSF3-202ENST00000460593 ABCC4O15439 1325 aa14.26□□□□□ -0.13
CPSF3-202ENST00000460593 ADCY5O95622 1261 aa14.26□□□□□ -0.13
CPSF3-202ENST00000460593 BCL2L12Q9HB09 334 aa14.26□□□□□ -0.13
CPSF3-202ENST00000460593 U2AF2P26368 475 aaKnown RBP eCLIP14.25□□□□□ -0.132e-7■■□□□ 14.5
CPSF3-202ENST00000460593 GGT6Q6P531 493 aa14.25□□□□□ -0.13
CPSF3-202ENST00000460593 USP48Q86UV5 1035 aa14.25□□□□□ -0.13
CPSF3-202ENST00000460593 ERCC6L2Q5T890 1561 aa14.25□□□□□ -0.13
CPSF3-202ENST00000460593 COL3A1P02461 1466 aaPredicted RBP14.25□□□□□ -0.13
CPSF3-202ENST00000460593 ABCC1P33527 1531 aa14.25□□□□□ -0.13
CPSF3-202ENST00000460593 NCBP3Q53F19 620 aaKnown RBP14.24□□□□□ -0.13
CPSF3-202ENST00000460593 TULP4Q9NRJ4 1543 aa14.24□□□□□ -0.13
CPSF3-202ENST00000460593 BRD1O95696 1058 aa14.24□□□□□ -0.13
CPSF3-202ENST00000460593 MBD3O95983 291 aa14.24□□□□□ -0.13
CPSF3-202ENST00000460593 SPC24Q8NBT2 197 aa14.24□□□□□ -0.13
CPSF3-202ENST00000460593 PIBF1Q8WXW3 757 aa14.24□□□□□ -0.13
CPSF3-202ENST00000460593 TET3O43151 1660 aa14.23□□□□□ -0.13
CPSF3-202ENST00000460593 MEIS3Q99687 375 aa14.23□□□□□ -0.13
CPSF3-202ENST00000460593 ZFYVE16Q7Z3T8 1539 aa14.23□□□□□ -0.13
CPSF3-202ENST00000460593 ERC2O15083 957 aa14.23□□□□□ -0.13
CPSF3-202ENST00000460593 CASC1Q6TDU7 716 aa14.23□□□□□ -0.13
CPSF3-202ENST00000460593 KIF3AQ9Y496 699 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms