RNA–Protein interactions for RNA: ENST00000460485.1

ERCC3-205, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 3

Gene ERCC3, Length 815 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-205ENST00000460485 NPHP3Q7Z494 1330 aa18.39■□□□□ 0.53
ERCC3-205ENST00000460485 MARF1Q9Y4F3 1742 aaKnown RBP18.38■□□□□ 0.53
ERCC3-205ENST00000460485 CT47B1P0C2W7 299 aaPredicted RBP18.38■□□□□ 0.53
ERCC3-205ENST00000460485 WWC1Q8IX03 1113 aa18.38■□□□□ 0.53
ERCC3-205ENST00000460485 GGNBP2Q9H3C7 697 aa18.38■□□□□ 0.53
ERCC3-205ENST00000460485 TNNT2P45379 298 aaPredicted RBP18.37■□□□□ 0.53
ERCC3-205ENST00000460485 DEFB132Q7Z7B7 95 aa18.37■□□□□ 0.53
ERCC3-205ENST00000460485 UNC5CLQ8IV45 518 aa18.37■□□□□ 0.53
ERCC3-205ENST00000460485 PLEKHG3A1L390 1219 aa18.36■□□□□ 0.53
ERCC3-205ENST00000460485 DIAPH1O60610 1272 aaKnown RBP18.36■□□□□ 0.53
ERCC3-205ENST00000460485 TCP11L2Q8N4U5 519 aa18.36■□□□□ 0.53
ERCC3-205ENST00000460485 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.36■□□□□ 0.53
ERCC3-205ENST00000460485 MYH16Q9H6N6 1097 aa18.36■□□□□ 0.53
ERCC3-205ENST00000460485 MAPK8IP3Q9UPT6 1336 aa18.36■□□□□ 0.53
ERCC3-205ENST00000460485 IL16Q14005 1332 aa18.35■□□□□ 0.53
ERCC3-205ENST00000460485 U2AF1L5P0DN76 240 aaPredicted RBP18.35■□□□□ 0.53
ERCC3-205ENST00000460485 U2AF1Q01081 240 aaKnown RBP eCLIP18.35■□□□□ 0.53
ERCC3-205ENST00000460485 B4GALNT3Q6L9W6 998 aa18.35■□□□□ 0.53
ERCC3-205ENST00000460485 NEFMP07197 916 aa18.34■□□□□ 0.53
ERCC3-205ENST00000460485 AAMPQ13685 434 aa18.34■□□□□ 0.53
ERCC3-205ENST00000460485 USP6P35125 1406 aa18.33■□□□□ 0.53
ERCC3-205ENST00000460485 TTC21AQ8NDW8 1320 aa18.33■□□□□ 0.53
ERCC3-205ENST00000460485 ONECUT3O60422 494 aaPredicted RBP18.33■□□□□ 0.52
ERCC3-205ENST00000460485 COG3Q96JB2 828 aa18.33■□□□□ 0.52
ERCC3-205ENST00000460485 SLIT2O94813 1529 aa18.33■□□□□ 0.52
ERCC3-205ENST00000460485 FCHSD2O94868 740 aa18.32■□□□□ 0.52
ERCC3-205ENST00000460485 PXDNQ92626 1479 aa18.32■□□□□ 0.52
ERCC3-205ENST00000460485 OVOS2A0A0J9YW53 1432 aa18.32■□□□□ 0.52
ERCC3-205ENST00000460485 OVOS2Q6IE36 1432 aa18.32■□□□□ 0.52
ERCC3-205ENST00000460485 GLI3P10071 1580 aa18.31■□□□□ 0.52
ERCC3-205ENST00000460485 ESCO1Q5FWF5 840 aa18.31■□□□□ 0.52
ERCC3-205ENST00000460485 SENP3-EIF4A1A0A087X0R7 540 aa18.3■□□□□ 0.52
ERCC3-205ENST00000460485 SEPT12Q8IYM1 358 aa18.3■□□□□ 0.52
ERCC3-205ENST00000460485 BRWD3Q6RI45 1802 aa18.3■□□□□ 0.52
ERCC3-205ENST00000460485 PRR36Q9H6K5 1346 aa18.29■□□□□ 0.52
ERCC3-205ENST00000460485 FOXO3O43524 673 aa18.29■□□□□ 0.52
ERCC3-205ENST00000460485 CALD1Q05682 793 aaKnown RBP18.28■□□□□ 0.52
ERCC3-205ENST00000460485 PDE3AQ14432 1141 aa18.28■□□□□ 0.52
ERCC3-205ENST00000460485 EXOC6Q8TAG9 804 aa18.28■□□□□ 0.52
ERCC3-205ENST00000460485 PLEKHF1Q96S99 279 aa18.28■□□□□ 0.52
ERCC3-205ENST00000460485 SSH2Q76I76 1423 aa18.28■□□□□ 0.52
ERCC3-205ENST00000460485 RGPD8O14715 1765 aaPredicted RBP18.27■□□□□ 0.52
ERCC3-205ENST00000460485 VPS72Q15906 364 aa18.27■□□□□ 0.52
ERCC3-205ENST00000460485 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.27■□□□□ 0.52
ERCC3-205ENST00000460485 POLKQ9UBT6 870 aa18.27■□□□□ 0.52
ERCC3-205ENST00000460485 USP31Q70CQ4 1352 aa18.27■□□□□ 0.51
ERCC3-205ENST00000460485 U2SURPO15042 1029 aaKnown RBP18.26■□□□□ 0.51
ERCC3-205ENST00000460485 BAG6P46379 1132 aa18.26■□□□□ 0.51
ERCC3-205ENST00000460485 KRT27Q7Z3Y8 459 aa18.26■□□□□ 0.51
ERCC3-205ENST00000460485 KIF24Q5T7B8 1368 aa18.26■□□□□ 0.51
ERCC3-205ENST00000460485 TTC21BQ7Z4L5 1316 aa18.25■□□□□ 0.51
ERCC3-205ENST00000460485 MS4A1P11836 297 aa18.25■□□□□ 0.51
ERCC3-205ENST00000460485 TMPOP42166 694 aaKnown RBP18.25■□□□□ 0.51
ERCC3-205ENST00000460485 RGPD1P0DJD0 1748 aa18.25■□□□□ 0.51
ERCC3-205ENST00000460485 LMOD3Q0VAK6 560 aa18.24■□□□□ 0.51
ERCC3-205ENST00000460485 ACEP12821 1306 aa18.23■□□□□ 0.51
ERCC3-205ENST00000460485 SPATA31A3Q5VYP0 1347 aa18.23■□□□□ 0.51
ERCC3-205ENST00000460485 DLG5Q8TDM6 1919 aa18.23■□□□□ 0.51
ERCC3-205ENST00000460485 PSDA5PKW4 1024 aaPredicted RBP18.23■□□□□ 0.51
ERCC3-205ENST00000460485 XPCQ01831 940 aaPredicted RBP18.23■□□□□ 0.51
ERCC3-205ENST00000460485 ZNF428Q96B54 188 aa18.23■□□□□ 0.51
ERCC3-205ENST00000460485 RBM19Q9Y4C8 960 aaKnown RBP18.23■□□□□ 0.51
ERCC3-205ENST00000460485 PIK3C2AO00443 1686 aa18.22■□□□□ 0.51
ERCC3-205ENST00000460485 TCERG1O14776 1098 aaKnown RBP18.22■□□□□ 0.51
ERCC3-205ENST00000460485 NME9Q86XW9 330 aa18.22■□□□□ 0.51
ERCC3-205ENST00000460485 CRBNQ96SW2 442 aa18.22■□□□□ 0.51
ERCC3-205ENST00000460485 CENPQQ7L2Z9 268 aaPredicted RBP18.21■□□□□ 0.51
ERCC3-205ENST00000460485 RSPH6AQ9H0K4 717 aa18.21■□□□□ 0.51
ERCC3-205ENST00000460485 SPINK5Q9NQ38 1064 aaPredicted RBP18.21■□□□□ 0.51
ERCC3-205ENST00000460485 FANCIQ9NVI1 1328 aa18.2■□□□□ 0.5
ERCC3-205ENST00000460485 IL13P35225 146 aa18.18■□□□□ 0.5
ERCC3-205ENST00000460485 PEAK1Q9H792 1746 aa18.18■□□□□ 0.5
ERCC3-205ENST00000460485 NWD2Q9ULI1 1742 aa18.18■□□□□ 0.5
ERCC3-205ENST00000460485 PLIN1O60240 522 aa18.17■□□□□ 0.5
ERCC3-205ENST00000460485 CANXP27824 592 aaKnown RBP18.17■□□□□ 0.5
ERCC3-205ENST00000460485 RARSP54136 660 aaKnown RBP18.17■□□□□ 0.5
ERCC3-205ENST00000460485 NEUROD2Q15784 382 aa18.17■□□□□ 0.5
ERCC3-205ENST00000460485 NFE2L2Q16236 605 aa18.17■□□□□ 0.5
ERCC3-205ENST00000460485 RRP7AQ9Y3A4 280 aaKnown RBP18.17■□□□□ 0.5
ERCC3-205ENST00000460485 KIF1AQ12756 1690 aa18.17■□□□□ 0.5
ERCC3-205ENST00000460485 PHRF1Q9P1Y6 1649 aaKnown RBP18.16■□□□□ 0.5
ERCC3-205ENST00000460485 KRT28Q7Z3Y7 464 aa18.16■□□□□ 0.5
ERCC3-205ENST00000460485 SBNO1A3KN83 1393 aa18.16■□□□□ 0.5
ERCC3-205ENST00000460485 ARHGEF10O15013 1369 aa18.16■□□□□ 0.5
ERCC3-205ENST00000460485 PRKAR2BP31323 418 aa18.15■□□□□ 0.5
ERCC3-205ENST00000460485 RIPK4P57078 832 aa18.15■□□□□ 0.5
ERCC3-205ENST00000460485 TRIM35Q9UPQ4 493 aa18.15■□□□□ 0.5
ERCC3-205ENST00000460485 CCDC9Q9Y3X0 531 aaKnown RBP18.15■□□□□ 0.5
ERCC3-205ENST00000460485 EMILIN1Q9Y6C2 1016 aa18.15■□□□□ 0.5
ERCC3-205ENST00000460485 FLT4P35916 1363 aa18.15■□□□□ 0.5
ERCC3-205ENST00000460485 HAP1P54257 671 aaPredicted RBP18.14■□□□□ 0.49
ERCC3-205ENST00000460485 EN1Q05925 392 aaPredicted RBP18.14■□□□□ 0.49
ERCC3-205ENST00000460485 PSME1Q06323 249 aa18.14■□□□□ 0.49
ERCC3-205ENST00000460485 KDM2BQ8NHM5 1336 aa18.14■□□□□ 0.49
ERCC3-205ENST00000460485 RTL1A6NKG5 1358 aa18.14■□□□□ 0.49
ERCC3-205ENST00000460485 YY1P25490 414 aa18.13■□□□□ 0.49
ERCC3-205ENST00000460485 R3HDM1Q15032 1099 aaKnown RBP18.13■□□□□ 0.49
ERCC3-205ENST00000460485 NGDNQ8NEJ9 315 aaKnown RBP18.13■□□□□ 0.49
ERCC3-205ENST00000460485 KIF16BQ96L93 1317 aa18.13■□□□□ 0.49
ERCC3-205ENST00000460485 DISP2A7MBM2 1401 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms