RNA–Protein interactions for RNA: ENST00000456315.6

DEPDC1-202, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene DEPDC1, Length 5,331 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-202ENST00000456315 SPTBN5Q9NRC6 3674 aaKnown RBP5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 CTIFO43310 598 aaKnown RBP5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 TSGA10IPQ3SY00 556 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 SPTLC3Q9NUV7 552 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 KNDC1Q76NI1 1749 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 RNF17Q9BXT8 1623 aaKnown RBP5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 IQSEC2Q5JU85 1478 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 USP27XA6NNY8 438 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 KIF20AO95235 890 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 IFIT2P09913 472 aaKnown RBP5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 TMF1P82094 1093 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 SASS6Q6UVJ0 657 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 PLEKHF1Q96S99 279 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 NBPF6Q5VWK0 638 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 NBPF4Q96M43 638 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 ERVK-7P63135 1459 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 C9orf84Q5VXU9 1444 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 MSNP26038 577 aaKnown RBP5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 HS1BP3Q53T59 392 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 ANKRD45Q5TZF3 282 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 LRSAM1Q6UWE0 723 aa5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 CIZ1Q9ULV3 898 aaPredicted RBP5.61□□□□□ -1.51
DEPDC1-202ENST00000456315 CPA1P15085 419 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 KMT5BQ4FZB7 885 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 HSCBQ8IWL3 235 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 EXOC6BQ9Y2D4 811 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 PBRM1Q86U86 1689 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 TMEM132EQ6IEE7 984 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 EP400NLQ6ZTU2 488 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 DIP2BQ9P265 1576 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 TULP2O00295 520 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 TRIM66O15016 1216 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 KCNJ4P48050 445 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 GYS2P54840 703 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 ST3GAL1Q11201 340 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 ITPRIPQ8IWB1 547 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 EPC1Q9H2F5 836 aa5.6□□□□□ -1.51
DEPDC1-202ENST00000456315 KIF16BQ96L93 1317 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 BRD1O95696 1058 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 HSP90AB1P08238 724 aaKnown RBP5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 RWDD1Q9H446 243 aaPredicted RBP5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 CCDC144AA2RUR9 1427 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 TROQ12816 1431 aaPredicted RBP5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 SDSP20132 328 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 RGS22Q8NE09 1264 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 CFAP65Q6ZU64 1925 aaKnown RBP5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 TERF2Q15554 542 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 CCDC144BQ3MJ40 725 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 GIMAP6Q6P9H5 292 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 NOL8Q76FK4 1167 aaKnown RBP5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 CCDC144CPQ8IYA2 1237 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 TMX1Q9H3N1 280 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 SMC4Q9NTJ3 1288 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 DDX41Q9UJV9 622 aaKnown RBP5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 TAF6LQ9Y6J9 622 aa5.59□□□□□ -1.51
DEPDC1-202ENST00000456315 SPAG9O60271 1321 aaKnown RBP5.59□□□□□ -1.52
DEPDC1-202ENST00000456315 ASXL1Q8IXJ9 1541 aa5.59□□□□□ -1.52
DEPDC1-202ENST00000456315 APBB1O00213 710 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 CANXP27824 592 aaKnown RBP5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 PMFBP1Q8TBY8 1022 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 ANKRD65E5RJM6 399 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 LARGE1O95461 756 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 HMGN5P82970 282 aaKnown RBP5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 ZKSCAN2Q63HK3 967 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 UPF2Q9HAU5 1272 aaKnown RBP5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 UGGT1Q9NYU2 1555 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 ANKRD30AQ9BXX3 1397 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 ADCY5O95622 1261 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 CACTINQ8WUQ7 758 aaKnown RBP5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 MAP3K4Q9Y6R4 1608 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 POLR3AO14802 1390 aaPredicted RBP5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 KANK1Q14678 1352 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 VAMP4O75379 141 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 TMPOP42166 694 aaKnown RBP5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 CDC42BPAQ5VT25 1732 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 TMX3Q96JJ7 454 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 FAM53CQ9NYF3 392 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 ZNF215Q9UL58 517 aaPredicted RBP5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 REV3LO60673 3130 aa5.58□□□□□ -1.52
DEPDC1-202ENST00000456315 ATP10DQ9P241 1426 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 RASEFQ8IZ41 740 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 DDX54Q8TDD1 881 aaKnown RBP5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 PTPRTO14522 1441 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 FAM83GA6ND36 823 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 DCTN1Q14203 1278 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 IPO4Q8TEX9 1081 aaKnown RBP5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 SIRT1Q96EB6 747 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 ATG3Q9NT62 314 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 KCNG1Q9UIX4 513 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 USP16Q9Y5T5 823 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 NPC1L1Q9UHC9 1359 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 SLC24A1O60721 1099 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 C8orf58Q8NAV2 365 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 ANP32BQ92688 251 aaKnown RBP5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 ZMYM3Q14202 1370 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 FBXO38Q6PIJ6 1188 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 SPC24Q8NBT2 197 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 GBP4Q96PP9 640 aa5.57□□□□□ -1.52
DEPDC1-202ENST00000456315 MAP7D2Q96T17 732 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms