RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 TULP1O00294 542 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-213ENST00000448038 HSP90AB2PQ58FF8 381 aa9.08□□□□□ -0.96
SYNE1-213ENST00000448038 MPRIPQ6WCQ1 1025 aa9.08□□□□□ -0.96
SYNE1-213ENST00000448038 CLASRPQ8N2M8 674 aaKnown RBP9.08□□□□□ -0.96
SYNE1-213ENST00000448038 ANKRD24Q8TF21 1146 aa9.08□□□□□ -0.96
SYNE1-213ENST00000448038 NGLY1Q96IV0 654 aa9.08□□□□□ -0.96
SYNE1-213ENST00000448038 ZRANB1Q9UGI0 708 aa9.08□□□□□ -0.96
SYNE1-213ENST00000448038 MVPQ14764 893 aaKnown RBP9.07□□□□□ -0.96
SYNE1-213ENST00000448038 MLH3Q9UHC1 1453 aa9.07□□□□□ -0.96
SYNE1-213ENST00000448038 PTCD1O75127 700 aaKnown RBP9.07□□□□□ -0.96
SYNE1-213ENST00000448038 CDK11BP21127 795 aaKnown RBP9.07□□□□□ -0.96
SYNE1-213ENST00000448038 TMOD3Q9NYL9 352 aa9.07□□□□□ -0.96
SYNE1-213ENST00000448038 NOL10Q9BSC4 688 aaKnown RBP9.06□□□□□ -0.96
SYNE1-213ENST00000448038 ANO2Q9NQ90 1003 aa9.06□□□□□ -0.96
SYNE1-213ENST00000448038 TOM1O60784 492 aa9.06□□□□□ -0.96
SYNE1-213ENST00000448038 CARD14Q9BXL6 1004 aa9.06□□□□□ -0.96
SYNE1-213ENST00000448038 TMEM2Q9UHN6 1383 aa9.06□□□□□ -0.96
SYNE1-213ENST00000448038 INTS3Q68E01 1043 aaKnown RBP9.06□□□□□ -0.96
SYNE1-213ENST00000448038 FANCIQ9NVI1 1328 aa9.06□□□□□ -0.96
SYNE1-213ENST00000448038 APPP05067 770 aa9.06□□□□□ -0.96
SYNE1-213ENST00000448038 UBAP1LF5GYI3 381 aa9.06□□□□□ -0.96
SYNE1-213ENST00000448038 ZKSCAN1P17029 563 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-213ENST00000448038 PDZRN3Q9UPQ7 1066 aa9.06□□□□□ -0.96
SYNE1-213ENST00000448038 A0A1W2PP64 1363 aa9.05□□□□□ -0.96
SYNE1-213ENST00000448038 GCC1Q96CN9 775 aa9.05□□□□□ -0.96
SYNE1-213ENST00000448038 MAGI2Q86UL8 1455 aa9.05□□□□□ -0.96
SYNE1-213ENST00000448038 STARD3NLO95772 234 aa9.05□□□□□ -0.96
SYNE1-213ENST00000448038 SSH1Q8WYL5 1049 aa9.05□□□□□ -0.96
SYNE1-213ENST00000448038 KLHL34Q8N239 644 aa9.05□□□□□ -0.96
SYNE1-213ENST00000448038 POLKQ9UBT6 870 aa9.05□□□□□ -0.96
SYNE1-213ENST00000448038 RARSP54136 660 aaKnown RBP9.05□□□□□ -0.96
SYNE1-213ENST00000448038 FBXW7Q969H0 707 aa9.05□□□□□ -0.96
SYNE1-213ENST00000448038 TRPM2O94759 1503 aa9.05□□□□□ -0.96
SYNE1-213ENST00000448038 HTATSF1O43719 755 aaKnown RBP9.04□□□□□ -0.96
SYNE1-213ENST00000448038 SF3B2Q13435 895 aaKnown RBP9.04□□□□□ -0.96
SYNE1-213ENST00000448038 PARD3Q8TEW0 1356 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 KDM6BO15054 1643 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 EXOC5O00471 708 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 LTKP29376 864 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 TMEM57Q8N5G2 664 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 HECW2Q9P2P5 1572 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 NKTRP30414 1462 aaKnown RBP9.04□□□□□ -0.96
SYNE1-213ENST00000448038 FAM83GA6ND36 823 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 ERC1Q8IUD2 1116 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 IFNL2Q8IZJ0 200 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 COL17A1Q9UMD9 1497 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-213ENST00000448038 ALDH1L2Q3SY69 923 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 CABLES1Q8TDN4 633 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 KIF3AQ9Y496 699 aa9.04□□□□□ -0.96
SYNE1-213ENST00000448038 AMOTL1Q8IY63 956 aa9.03□□□□□ -0.96
SYNE1-213ENST00000448038 CDC45O75419 566 aa9.03□□□□□ -0.96
SYNE1-213ENST00000448038 RNF20Q5VTR2 975 aa9.03□□□□□ -0.96
SYNE1-213ENST00000448038 CNNM1Q9NRU3 951 aa9.03□□□□□ -0.96
SYNE1-213ENST00000448038 SLC4A3P48751 1232 aa9.03□□□□□ -0.96
SYNE1-213ENST00000448038 EIF4A2Q14240 407 aaKnown RBP9.03□□□□□ -0.96
SYNE1-213ENST00000448038 SIL1Q9H173 461 aa9.03□□□□□ -0.96
SYNE1-213ENST00000448038 PTMSP20962 102 aa9.03□□□□□ -0.96
SYNE1-213ENST00000448038 WASHC4Q2M389 1173 aa9.03□□□□□ -0.96
SYNE1-213ENST00000448038 CNTROBQ8N137 903 aa9.03□□□□□ -0.96
SYNE1-213ENST00000448038 CDC42BPAQ5VT25 1732 aa9.02□□□□□ -0.96
SYNE1-213ENST00000448038 PER1O15534 1290 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-213ENST00000448038 SRGAP3O43295 1099 aa9.02□□□□□ -0.97
SYNE1-213ENST00000448038 FSD1Q9BTV5 496 aa9.02□□□□□ -0.97
SYNE1-213ENST00000448038 FOXD4L5Q5VV16 416 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-213ENST00000448038 AEBP1Q8IUX7 1158 aa9.02□□□□□ -0.97
SYNE1-213ENST00000448038 FOXD4L4Q8WXT5 416 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-213ENST00000448038 LRRCC1Q9C099 1032 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 KDM5DQ9BY66 1539 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 GCP02774 474 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 POLR3AO14802 1390 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-213ENST00000448038 FLT4P35916 1363 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 TRDNQ13061 729 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 CCDC57Q2TAC2 916 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 SYNE3Q6ZMZ3 975 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 DNAJC2Q99543 621 aaKnown RBP9.01□□□□□ -0.97
SYNE1-213ENST00000448038 FAM184AQ8NB25 1140 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 CHMP4CQ96CF2 233 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 FMNL2Q96PY5 1086 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 MBIPQ9NS73 344 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 CLASP1Q7Z460 1538 aa9.01□□□□□ -0.97
SYNE1-213ENST00000448038 LARP1Q6PKG0 1096 aaKnown RBP9□□□□□ -0.97
SYNE1-213ENST00000448038 RPAP2Q8IXW5 612 aaPredicted RBP9□□□□□ -0.97
SYNE1-213ENST00000448038 ORAI2Q96SN7 254 aa9□□□□□ -0.97
SYNE1-213ENST00000448038 C22orf23Q9BZE7 217 aa9□□□□□ -0.97
SYNE1-213ENST00000448038 GZF1Q9H116 711 aaPredicted RBP9□□□□□ -0.97
SYNE1-213ENST00000448038 CCDC27Q2M243 656 aa9□□□□□ -0.97
SYNE1-213ENST00000448038 IL16Q14005 1332 aa9□□□□□ -0.97
SYNE1-213ENST00000448038 LRRC59Q96AG4 307 aaKnown RBP9□□□□□ -0.97
SYNE1-213ENST00000448038 DBF4Q9UBU7 674 aaPredicted RBP9□□□□□ -0.97
SYNE1-213ENST00000448038 ADCY10Q96PN6 1610 aa9□□□□□ -0.97
SYNE1-213ENST00000448038 H3BQV1 296 aa9□□□□□ -0.97
SYNE1-213ENST00000448038 IFFO2Q5TF58 517 aa9□□□□□ -0.97
SYNE1-213ENST00000448038 F6X3S4 739 aa9□□□□□ -0.97
SYNE1-213ENST00000448038 TRIM34Q9BYJ4 488 aa9□□□□□ -0.97
SYNE1-213ENST00000448038 C20orf194Q5TEA3 1177 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 BICDL1Q6ZP65 573 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 TBC1D2BQ9UPU7 963 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 LMTK3Q96Q04 1460 aa8.99□□□□□ -0.97
SYNE1-213ENST00000448038 AKAP17AQ02040 695 aaKnown RBP8.99□□□□□ -0.97
SYNE1-213ENST00000448038 CSPP1Q1MSJ5 1256 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 332.7 ms