RNA–Protein interactions for RNA: ENST00000447439.6

KLHL3-202, Transcript of kelch like family member 3, humanhuman

TSL 1 (best)

Gene KLHL3, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL3-202ENST00000447439 PNNQ9H307 717 aaKnown RBP11.9□□□□□ -0.5
KLHL3-202ENST00000447439 CPS1P31327 1500 aa11.9□□□□□ -0.51
KLHL3-202ENST00000447439 ZMYM3Q14202 1370 aa11.89□□□□□ -0.51
KLHL3-202ENST00000447439 COG3Q96JB2 828 aa11.89□□□□□ -0.51
KLHL3-202ENST00000447439 KIF20BQ96Q89 1820 aa11.89□□□□□ -0.51
KLHL3-202ENST00000447439 PRR36Q9H6K5 1346 aa11.89□□□□□ -0.51
KLHL3-202ENST00000447439 ZBTB7BO15156 539 aaPredicted RBP11.89□□□□□ -0.51
KLHL3-202ENST00000447439 NUCB1Q02818 461 aa11.89□□□□□ -0.51
KLHL3-202ENST00000447439 TWISTNBQ3B726 338 aaPredicted RBP11.89□□□□□ -0.51
KLHL3-202ENST00000447439 CHD1LQ86WJ1 897 aa11.89□□□□□ -0.51
KLHL3-202ENST00000447439 ALDH1L2Q3SY69 923 aa11.88□□□□□ -0.51
KLHL3-202ENST00000447439 SIRT2Q8IXJ6 389 aa11.88□□□□□ -0.51
KLHL3-202ENST00000447439 GZF1Q9H116 711 aaPredicted RBP11.88□□□□□ -0.51
KLHL3-202ENST00000447439 ESF1Q9H501 851 aaKnown RBP11.88□□□□□ -0.51
KLHL3-202ENST00000447439 MCM10Q7L590 875 aa11.87□□□□□ -0.51
KLHL3-202ENST00000447439 FOXD4L1Q9NU39 408 aa11.87□□□□□ -0.51
KLHL3-202ENST00000447439 SULT6B1Q6IMI4 303 aa11.87□□□□□ -0.51
KLHL3-202ENST00000447439 APBB1O00213 710 aa11.86□□□□□ -0.51
KLHL3-202ENST00000447439 MIS18AQ9NYP9 233 aa11.86□□□□□ -0.51
KLHL3-202ENST00000447439 CCDC61Q9Y6R9 512 aa11.86□□□□□ -0.51
KLHL3-202ENST00000447439 ATP7BP35670 1465 aa11.86□□□□□ -0.51
KLHL3-202ENST00000447439 KIF13AQ9H1H9 1805 aa11.86□□□□□ -0.51
KLHL3-202ENST00000447439 CPSF1Q10570 1443 aaKnown RBP11.86□□□□□ -0.51
KLHL3-202ENST00000447439 GNAI1P63096 354 aa11.86□□□□□ -0.51
KLHL3-202ENST00000447439 MAP2P11137 1827 aaKnown RBP11.85□□□□□ -0.51
KLHL3-202ENST00000447439 IFT57Q9NWB7 429 aa11.85□□□□□ -0.51
KLHL3-202ENST00000447439 EDC4Q6P2E9 1401 aaKnown RBP11.85□□□□□ -0.51
KLHL3-202ENST00000447439 CEBPAP49715 358 aaPredicted RBP11.85□□□□□ -0.51
KLHL3-202ENST00000447439 SLC26A8Q96RN1 970 aa11.85□□□□□ -0.51
KLHL3-202ENST00000447439 CDC42BPGQ6DT37 1551 aa11.85□□□□□ -0.51
KLHL3-202ENST00000447439 ROBO2Q9HCK4 1378 aa11.84□□□□□ -0.51
KLHL3-202ENST00000447439 ZNF853P0CG23 659 aa11.84□□□□□ -0.51
KLHL3-202ENST00000447439 EIF4A2Q14240 407 aaKnown RBP11.84□□□□□ -0.51
KLHL3-202ENST00000447439 HSP90AB2PQ58FF8 381 aa11.84□□□□□ -0.51
KLHL3-202ENST00000447439 RBM42Q9BTD8 480 aaKnown RBP11.84□□□□□ -0.51
KLHL3-202ENST00000447439 C16orf71Q8IYS4 520 aaPredicted RBP11.83□□□□□ -0.51
KLHL3-202ENST00000447439 CFAP44Q96MT7 982 aa11.83□□□□□ -0.51
KLHL3-202ENST00000447439 NRXN3Q9Y4C0 1643 aa11.83□□□□□ -0.52
KLHL3-202ENST00000447439 FOXO3O43524 673 aa11.83□□□□□ -0.52
KLHL3-202ENST00000447439 CD2BP2O95400 341 aaKnown RBP11.83□□□□□ -0.52
KLHL3-202ENST00000447439 REREQ9P2R6 1566 aa11.83□□□□□ -0.52
KLHL3-202ENST00000447439 SETD1AO15047 1707 aaKnown RBP11.83□□□□□ -0.52
KLHL3-202ENST00000447439 SPATA31D1Q6ZQQ2 1576 aa11.83□□□□□ -0.52
KLHL3-202ENST00000447439 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.83□□□□□ -0.52
KLHL3-202ENST00000447439 DLC1Q96QB1 1528 aa11.82□□□□□ -0.52
KLHL3-202ENST00000447439 HSCBQ8IWL3 235 aa11.82□□□□□ -0.52
KLHL3-202ENST00000447439 ANO8Q9HCE9 1232 aaPredicted RBP11.82□□□□□ -0.52
KLHL3-202ENST00000447439 ACEP12821 1306 aa11.82□□□□□ -0.52
KLHL3-202ENST00000447439 OTUD7AQ8TE49 926 aaPredicted RBP11.82□□□□□ -0.52
KLHL3-202ENST00000447439 ABCC4O15439 1325 aa11.81□□□□□ -0.52
KLHL3-202ENST00000447439 CDK12Q9NYV4 1490 aaPredicted RBP11.81□□□□□ -0.52
KLHL3-202ENST00000447439 LTKP29376 864 aa11.81□□□□□ -0.52
KLHL3-202ENST00000447439 CALD1Q05682 793 aaKnown RBP11.81□□□□□ -0.52
KLHL3-202ENST00000447439 TBC1D9Q6ZT07 1266 aa11.81□□□□□ -0.52
KLHL3-202ENST00000447439 SMARCA5O60264 1052 aaPredicted RBP11.81□□□□□ -0.52
KLHL3-202ENST00000447439 NUTM2GQ5VZR2 741 aa11.8□□□□□ -0.52
KLHL3-202ENST00000447439 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.8□□□□□ -0.52
KLHL3-202ENST00000447439 TTC21BQ7Z4L5 1316 aa11.8□□□□□ -0.52
KLHL3-202ENST00000447439 PTCH1Q13635 1447 aa11.8□□□□□ -0.52
KLHL3-202ENST00000447439 MCM4P33991 863 aa11.8□□□□□ -0.52
KLHL3-202ENST00000447439 GSPT1P15170 499 aaKnown RBP11.79□□□□□ -0.52
KLHL3-202ENST00000447439 KIF2CQ99661 725 aa11.79□□□□□ -0.52
KLHL3-202ENST00000447439 AATKQ6ZMQ8 1374 aa11.79□□□□□ -0.52
KLHL3-202ENST00000447439 BRPF1P55201 1214 aaPredicted RBP11.79□□□□□ -0.52
KLHL3-202ENST00000447439 BMP2KLQ5H9B9 411 aa11.79□□□□□ -0.52
KLHL3-202ENST00000447439 ARHGAP45Q92619 1136 aa11.79□□□□□ -0.52
KLHL3-202ENST00000447439 AGLP35573 1532 aa11.78□□□□□ -0.52
KLHL3-202ENST00000447439 TNRQ92752 1358 aa11.78□□□□□ -0.52
KLHL3-202ENST00000447439 LMOD3Q0VAK6 560 aa11.78□□□□□ -0.52
KLHL3-202ENST00000447439 NECTIN2Q92692 538 aa11.78□□□□□ -0.52
KLHL3-202ENST00000447439 GCC1Q96CN9 775 aa11.78□□□□□ -0.52
KLHL3-202ENST00000447439 CHMP5Q9NZZ3 219 aa11.78□□□□□ -0.52
KLHL3-202ENST00000447439 PPP6R1Q9UPN7 881 aa11.78□□□□□ -0.52
KLHL3-202ENST00000447439 F6X3S4 739 aa11.78□□□□□ -0.52
KLHL3-202ENST00000447439 HSP90AB1P08238 724 aaKnown RBP11.78□□□□□ -0.52
KLHL3-202ENST00000447439 ZNF428Q96B54 188 aa11.78□□□□□ -0.52
KLHL3-202ENST00000447439 ZNF692Q9BU19 519 aaPredicted RBP11.78□□□□□ -0.52
KLHL3-202ENST00000447439 PIK3R4Q99570 1358 aa11.77□□□□□ -0.52
KLHL3-202ENST00000447439 RBM25P49756 843 aaKnown RBP11.77□□□□□ -0.52
KLHL3-202ENST00000447439 SLC4A10Q6U841 1118 aa11.77□□□□□ -0.52
KLHL3-202ENST00000447439 MEIS3Q99687 375 aa11.77□□□□□ -0.52
KLHL3-202ENST00000447439 API5Q9BZZ5 524 aaKnown RBP11.77□□□□□ -0.52
KLHL3-202ENST00000447439 G2E3Q7L622 706 aa11.77□□□□□ -0.53
KLHL3-202ENST00000447439 TMEM2Q9UHN6 1383 aa11.77□□□□□ -0.53
KLHL3-202ENST00000447439 PANK2Q9BZ23 570 aa11.76□□□□□ -0.53
KLHL3-202ENST00000447439 MSH6P52701 1360 aa11.76□□□□□ -0.53
KLHL3-202ENST00000447439 DLG5Q8TDM6 1919 aa11.76□□□□□ -0.53
KLHL3-202ENST00000447439 PLEKHG5O94827 1062 aa11.76□□□□□ -0.53
KLHL3-202ENST00000447439 SLC4A2P04920 1241 aa11.76□□□□□ -0.53
KLHL3-202ENST00000447439 PLEKHM2Q8IWE5 1019 aa11.76□□□□□ -0.53
KLHL3-202ENST00000447439 MAP3K19Q56UN5 1328 aa11.76□□□□□ -0.53
KLHL3-202ENST00000447439 TRAK2O60296 914 aa11.75□□□□□ -0.53
KLHL3-202ENST00000447439 MTHFSDQ2M296 383 aaKnown RBP11.75□□□□□ -0.53
KLHL3-202ENST00000447439 HSP90AA1P07900 732 aaKnown RBP11.75□□□□□ -0.53
KLHL3-202ENST00000447439 ADAMTS13Q76LX8 1427 aa11.75□□□□□ -0.53
KLHL3-202ENST00000447439 KNDC1Q76NI1 1749 aa11.75□□□□□ -0.53
KLHL3-202ENST00000447439 CHL1O00533 1208 aa11.74□□□□□ -0.53
KLHL3-202ENST00000447439 TSHZ3Q63HK5 1081 aa11.74□□□□□ -0.53
KLHL3-202ENST00000447439 RBM33Q96EV2 1170 aaKnown RBP11.74□□□□□ -0.53
KLHL3-202ENST00000447439 LTV1Q96GA3 475 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms