RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 NBPF1Q3BBV0 1214 aa11.08□□□□□ -0.64
CD44-211ENST00000442151 POLR3AO14802 1390 aaPredicted RBP11.08□□□□□ -0.64
CD44-211ENST00000442151 C11orf95C9JLR9 678 aaPredicted RBP11.07□□□□□ -0.64
CD44-211ENST00000442151 NEUROD1Q13562 356 aa11.07□□□□□ -0.64
CD44-211ENST00000442151 ARHGEF28Q8N1W1 1705 aaKnown RBP11.07□□□□□ -0.64
CD44-211ENST00000442151 POTEFA5A3E0 1075 aa11.07□□□□□ -0.64
CD44-211ENST00000442151 COL14A1Q05707 1796 aaKnown RBP11.07□□□□□ -0.64
CD44-211ENST00000442151 BAG6P46379 1132 aa11.06□□□□□ -0.64
CD44-211ENST00000442151 SPATA31A5Q5VU36 1347 aa11.05□□□□□ -0.64
CD44-211ENST00000442151 SPATA31A7Q8IWB4 1347 aa11.05□□□□□ -0.64
CD44-211ENST00000442151 TRPM3Q9HCF6 1732 aaPredicted RBP11.05□□□□□ -0.64
CD44-211ENST00000442151 FAM98CQ17RN3 349 aaKnown RBP11.05□□□□□ -0.64
CD44-211ENST00000442151 ALS2Q96Q42 1657 aa11.05□□□□□ -0.64
CD44-211ENST00000442151 ROCK2O75116 1388 aaKnown RBP11.04□□□□□ -0.64
CD44-211ENST00000442151 ST18O60284 1047 aa11.04□□□□□ -0.64
CD44-211ENST00000442151 ZC3H6P61129 1189 aaKnown RBP11.04□□□□□ -0.64
CD44-211ENST00000442151 CABP2Q9NPB3 220 aa11.04□□□□□ -0.64
CD44-211ENST00000442151 THRAP3Q9Y2W1 955 aaKnown RBP11.04□□□□□ -0.64
CD44-211ENST00000442151 GLI3P10071 1580 aa11.03□□□□□ -0.64
CD44-211ENST00000442151 PPIP5K1Q6PFW1 1433 aa11.03□□□□□ -0.64
CD44-211ENST00000442151 SIN3AQ96ST3 1273 aa11.03□□□□□ -0.64
CD44-211ENST00000442151 CABP1Q9NZU7 370 aa11.03□□□□□ -0.64
CD44-211ENST00000442151 PLCH1Q4KWH8 1693 aa11.03□□□□□ -0.64
CD44-211ENST00000442151 KIAA0232Q92628 1395 aa11.03□□□□□ -0.64
CD44-211ENST00000442151 GCP02774 474 aa11.02□□□□□ -0.64
CD44-211ENST00000442151 PDE3BQ13370 1112 aa11.02□□□□□ -0.64
CD44-211ENST00000442151 FAM196AQ6ZSG2 479 aa11.02□□□□□ -0.64
CD44-211ENST00000442151 KCNH5Q8NCM2 988 aa11.02□□□□□ -0.64
CD44-211ENST00000442151 STRN4Q9NRL3 753 aa11.02□□□□□ -0.64
CD44-211ENST00000442151 CPDO75976 1380 aa11.02□□□□□ -0.65
CD44-211ENST00000442151 NLRP6P59044 892 aa11.02□□□□□ -0.65
CD44-211ENST00000442151 NUTM2GQ5VZR2 741 aa11.02□□□□□ -0.65
CD44-211ENST00000442151 BARGINQ6ZT62 677 aa11.02□□□□□ -0.65
CD44-211ENST00000442151 ABCA3Q99758 1704 aa11.01□□□□□ -0.65
CD44-211ENST00000442151 SPATA31A1Q5TZJ5 1347 aa11.01□□□□□ -0.65
CD44-211ENST00000442151 TTC21AQ8NDW8 1320 aa11.01□□□□□ -0.65
CD44-211ENST00000442151 CHRNA2Q15822 529 aa11□□□□□ -0.65
CD44-211ENST00000442151 TCP11L2Q8N4U5 519 aa11□□□□□ -0.65
CD44-211ENST00000442151 TONSLQ96HA7 1378 aa11□□□□□ -0.65
CD44-211ENST00000442151 USP19O94966 1318 aa11□□□□□ -0.65
CD44-211ENST00000442151 PUS7Q96PZ0 661 aaKnown RBP11□□□□□ -0.65
CD44-211ENST00000442151 CARD11Q9BXL7 1154 aa11□□□□□ -0.65
CD44-211ENST00000442151 TRIM26Q12899 539 aaPredicted RBP10.99□□□□□ -0.65
CD44-211ENST00000442151 CDCA7Q9BWT1 371 aaPredicted RBP10.99□□□□□ -0.65
CD44-211ENST00000442151 SRCAPQ6ZRS2 3230 aa10.98□□□□□ -0.65
CD44-211ENST00000442151 USP6P35125 1406 aa10.98□□□□□ -0.65
CD44-211ENST00000442151 TOPAZ1Q8N9V7 1692 aa10.98□□□□□ -0.65
CD44-211ENST00000442151 HDGFL2Q7Z4V5 671 aaPredicted RBP10.98□□□□□ -0.65
CD44-211ENST00000442151 NRAPQ86VF7 1730 aa10.97□□□□□ -0.65
CD44-211ENST00000442151 QRICH2Q9H0J4 1663 aa10.97□□□□□ -0.65
CD44-211ENST00000442151 MNX1P50219 401 aaPredicted RBP10.97□□□□□ -0.65
CD44-211ENST00000442151 DEFB132Q7Z7B7 95 aa10.97□□□□□ -0.65
CD44-211ENST00000442151 BRWD3Q6RI45 1802 aa10.97□□□□□ -0.65
CD44-211ENST00000442151 SSH2Q76I76 1423 aa10.96□□□□□ -0.65
CD44-211ENST00000442151 ZBTB7CA1YPR0 619 aa10.96□□□□□ -0.65
CD44-211ENST00000442151 TERF2IPQ9NYB0 399 aa10.96□□□□□ -0.65
CD44-211ENST00000442151 USP35Q9P2H5 1018 aa10.96□□□□□ -0.65
CD44-211ENST00000442151 AATKQ6ZMQ8 1374 aa10.96□□□□□ -0.65
CD44-211ENST00000442151 SBNO2Q9Y2G9 1366 aa10.96□□□□□ -0.65
CD44-211ENST00000442151 TTC21BQ7Z4L5 1316 aa10.96□□□□□ -0.66
CD44-211ENST00000442151 TRPM1Q7Z4N2 1603 aa10.96□□□□□ -0.66
CD44-211ENST00000442151 PARD3Q8TEW0 1356 aa10.95□□□□□ -0.66
CD44-211ENST00000442151 LARP1Q6PKG0 1096 aaKnown RBP10.95□□□□□ -0.66
CD44-211ENST00000442151 TMEM121BQ9BXQ6 578 aaPredicted RBP10.95□□□□□ -0.66
CD44-211ENST00000442151 BMP2KQ9NSY1 1161 aaPredicted RBP10.95□□□□□ -0.66
CD44-211ENST00000442151 KTN1Q86UP2 1357 aaKnown RBP10.95□□□□□ -0.66
CD44-211ENST00000442151 SEC24BO95487 1268 aa10.95□□□□□ -0.66
CD44-211ENST00000442151 NBPF14Q5TI25 921 aa10.95□□□□□ -0.66
CD44-211ENST00000442151 TOM1L2Q6ZVM7 507 aa10.95□□□□□ -0.66
CD44-211ENST00000442151 PHRF1Q9P1Y6 1649 aaKnown RBP10.95□□□□□ -0.66
CD44-211ENST00000442151 CRYBG1Q9Y4K1 1723 aa10.94□□□□□ -0.66
CD44-211ENST00000442151 TMC1Q8TDI8 760 aa10.94□□□□□ -0.66
CD44-211ENST00000442151 APBA3O96018 575 aa10.93□□□□□ -0.66
CD44-211ENST00000442151 CSB-PGBD3P0DP91 1061 aa10.93□□□□□ -0.66
CD44-211ENST00000442151 TIE1P35590 1138 aa10.93□□□□□ -0.66
CD44-211ENST00000442151 CRB1P82279 1406 aa10.93□□□□□ -0.66
CD44-211ENST00000442151 RGPD1P0DJD0 1748 aa10.93□□□□□ -0.66
CD44-211ENST00000442151 EN1Q05925 392 aaPredicted RBP10.93□□□□□ -0.66
CD44-211ENST00000442151 SLAIN1Q8ND83 568 aa10.93□□□□□ -0.66
CD44-211ENST00000442151 DISP2A7MBM2 1401 aa10.92□□□□□ -0.66
CD44-211ENST00000442151 TRIM37O94972 964 aa10.92□□□□□ -0.66
CD44-211ENST00000442151 DDB1Q16531 1140 aa10.92□□□□□ -0.66
CD44-211ENST00000442151 CDCA8Q53HL2 280 aa10.92□□□□□ -0.66
CD44-211ENST00000442151 ARHGEF25Q86VW2 580 aa10.92□□□□□ -0.66
CD44-211ENST00000442151 TIMELESSQ9UNS1 1208 aa10.92□□□□□ -0.66
CD44-211ENST00000442151 CAMTA1Q9Y6Y1 1673 aa10.92□□□□□ -0.66
CD44-211ENST00000442151 NINLQ9Y2I6 1382 aa10.92□□□□□ -0.66
CD44-211ENST00000442151 THSD7AQ9UPZ6 1657 aa10.91□□□□□ -0.66
CD44-211ENST00000442151 WDR17Q8IZU2 1322 aa10.91□□□□□ -0.66
CD44-211ENST00000442151 NRKQ7Z2Y5 1582 aa10.91□□□□□ -0.66
CD44-211ENST00000442151 CARD10Q9BWT7 1032 aa10.91□□□□□ -0.66
CD44-211ENST00000442151 SLIT3O75094 1523 aa10.91□□□□□ -0.66
CD44-211ENST00000442151 CPSF1Q10570 1443 aaKnown RBP10.9□□□□□ -0.66
CD44-211ENST00000442151 EXOC5O00471 708 aa10.9□□□□□ -0.66
CD44-211ENST00000442151 USP31Q70CQ4 1352 aa10.9□□□□□ -0.67
CD44-211ENST00000442151 CCDC7Q96M83 1385 aa10.9□□□□□ -0.67
CD44-211ENST00000442151 COL5A2P05997 1499 aaPredicted RBP10.89□□□□□ -0.67
CD44-211ENST00000442151 FAM182BQ5T319 152 aa10.89□□□□□ -0.67
CD44-211ENST00000442151 CAMKK2Q96RR4 588 aa10.89□□□□□ -0.67
CD44-211ENST00000442151 EP400Q96L91 3159 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms