RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 ATP1B4Q9UN42 357 aaPredicted RBP13.22□□□□□ -0.29
SYNE2-206ENST00000441438 TCOF1Q13428 1488 aaKnown RBP13.22□□□□□ -0.29
SYNE2-206ENST00000441438 ARHGEF40Q8TER5 1519 aa13.22□□□□□ -0.29
SYNE2-206ENST00000441438 PLXNC1O60486 1568 aa13.22□□□□□ -0.29
SYNE2-206ENST00000441438 KAT6BQ8WYB5 2073 aa13.22□□□□□ -0.29
SYNE2-206ENST00000441438 KDM6BO15054 1643 aa13.21□□□□□ -0.29
SYNE2-206ENST00000441438 TDO2P48775 406 aa13.21□□□□□ -0.29
SYNE2-206ENST00000441438 IGBP1P78318 339 aa13.21□□□□□ -0.29
SYNE2-206ENST00000441438 SPACA7Q96KW9 195 aa13.21□□□□□ -0.29
SYNE2-206ENST00000441438 SENP7Q9BQF6 1050 aa13.21□□□□□ -0.29
SYNE2-206ENST00000441438 ADGBQ8N7X0 1667 aa13.21□□□□□ -0.29
SYNE2-206ENST00000441438 PNISRQ8TF01 805 aaKnown RBP13.21□□□□□ -0.29
SYNE2-206ENST00000441438 MAP3K20Q9NYL2 800 aaKnown RBP13.21□□□□□ -0.29
SYNE2-206ENST00000441438 ABCC1P33527 1531 aa13.21□□□□□ -0.3
SYNE2-206ENST00000441438 SHANK2Q9UPX8 1470 aa13.21□□□□□ -0.3
SYNE2-206ENST00000441438 CT47B1P0C2W7 299 aaPredicted RBP13.21□□□□□ -0.3
SYNE2-206ENST00000441438 SSR1P43307 286 aaKnown RBP13.21□□□□□ -0.3
SYNE2-206ENST00000441438 PTPROQ16827 1216 aa13.21□□□□□ -0.3
SYNE2-206ENST00000441438 TTC30BQ8N4P2 665 aa13.21□□□□□ -0.3
SYNE2-206ENST00000441438 INO80Q9ULG1 1556 aaPredicted RBP13.2□□□□□ -0.3
SYNE2-206ENST00000441438 PUF60Q9UHX1 559 aaKnown RBP13.2□□□□□ -0.3
SYNE2-206ENST00000441438 EGFLAMQ63HQ2 1017 aa13.2□□□□□ -0.3
SYNE2-206ENST00000441438 CCDC146Q8IYE0 955 aa13.2□□□□□ -0.3
SYNE2-206ENST00000441438 BSDC1Q9NW68 430 aaPredicted RBP13.2□□□□□ -0.3
SYNE2-206ENST00000441438 ICE2Q659A1 982 aa13.19□□□□□ -0.3
SYNE2-206ENST00000441438 MIA2Q96PC5 1412 aa13.19□□□□□ -0.3
SYNE2-206ENST00000441438 TTC37Q6PGP7 1564 aa13.19□□□□□ -0.3
SYNE2-206ENST00000441438 FAM200BP0CF97 657 aa13.19□□□□□ -0.3
SYNE2-206ENST00000441438 ZRSR2Q15696 482 aaKnown RBP13.19□□□□□ -0.3
SYNE2-206ENST00000441438 PLCH2O75038 1416 aa13.18□□□□□ -0.3
SYNE2-206ENST00000441438 ZKSCAN8Q15776 578 aaPredicted RBP13.18□□□□□ -0.3
SYNE2-206ENST00000441438 RAI14Q9P0K7 980 aa13.18□□□□□ -0.3
SYNE2-206ENST00000441438 KCNB2Q92953 911 aa13.17□□□□□ -0.3
SYNE2-206ENST00000441438 BORCS6Q96GS4 357 aa13.17□□□□□ -0.3
SYNE2-206ENST00000441438 C1orf131Q8NDD1 294 aaKnown RBP13.17□□□□□ -0.3
SYNE2-206ENST00000441438 SWAP70Q9UH65 585 aa13.17□□□□□ -0.3
SYNE2-206ENST00000441438 ZC3H13Q5T200 1668 aaKnown RBP13.16□□□□□ -0.3
SYNE2-206ENST00000441438 HSP90AB2PQ58FF8 381 aa13.16□□□□□ -0.3
SYNE2-206ENST00000441438 KRI1Q8N9T8 703 aaKnown RBP13.16□□□□□ -0.3
SYNE2-206ENST00000441438 SF3A1Q15459 793 aaKnown RBP13.15□□□□□ -0.3
SYNE2-206ENST00000441438 NOM1Q5C9Z4 860 aaKnown RBP13.15□□□□□ -0.3
SYNE2-206ENST00000441438 RTEL1-TNFRSF6BF6WH68 1400 aa13.15□□□□□ -0.3
SYNE2-206ENST00000441438 PRR12Q9ULL5 1215 aa13.15□□□□□ -0.3
SYNE2-206ENST00000441438 MLH3Q9UHC1 1453 aa13.15□□□□□ -0.3
SYNE2-206ENST00000441438 TSPOAP1O95153 1857 aa13.14□□□□□ -0.31
SYNE2-206ENST00000441438 MSH5O43196 834 aa13.14□□□□□ -0.31
SYNE2-206ENST00000441438 SCYL1Q96KG9 808 aa13.14□□□□□ -0.31
SYNE2-206ENST00000441438 RPS6KC1Q96S38 1066 aa13.14□□□□□ -0.31
SYNE2-206ENST00000441438 SYNPO2Q9UMS6 1093 aa13.14□□□□□ -0.31
SYNE2-206ENST00000441438 PDAP1Q13442 181 aaKnown RBP13.13□□□□□ -0.31
SYNE2-206ENST00000441438 SNRNP27Q8WVK2 155 aaKnown RBP13.13□□□□□ -0.31
SYNE2-206ENST00000441438 LNPKQ9C0E8 428 aa13.13□□□□□ -0.31
SYNE2-206ENST00000441438 INO80BQ9C086 356 aaPredicted RBP13.13□□□□□ -0.31
SYNE2-206ENST00000441438 KLF15Q9UIH9 416 aa13.13□□□□□ -0.31
SYNE2-206ENST00000441438 TMA7Q9Y2S6 64 aaKnown RBP13.13□□□□□ -0.31
SYNE2-206ENST00000441438 RNF17Q9BXT8 1623 aaKnown RBP13.13□□□□□ -0.31
SYNE2-206ENST00000441438 HECW2Q9P2P5 1572 aa13.12□□□□□ -0.31
SYNE2-206ENST00000441438 UVSSAQ2YD98 709 aa13.12□□□□□ -0.31
SYNE2-206ENST00000441438 YY1AP1Q9H869 796 aa13.12□□□□□ -0.31
SYNE2-206ENST00000441438 KDM5AP29375 1690 aaKnown RBP13.12□□□□□ -0.31
SYNE2-206ENST00000441438 HOXA2O43364 376 aa13.12□□□□□ -0.31
SYNE2-206ENST00000441438 POU5F1Q01860 360 aaKnown RBP13.12□□□□□ -0.31
SYNE2-206ENST00000441438 BIRC2Q13490 618 aa13.12□□□□□ -0.31
SYNE2-206ENST00000441438 RNF217Q8TC41 542 aa13.12□□□□□ -0.31
SYNE2-206ENST00000441438 GEMIN8Q9NWZ8 242 aaKnown RBP13.12□□□□□ -0.31
SYNE2-206ENST00000441438 MRVI1Q9Y6F6 885 aa13.12□□□□□ -0.31
SYNE2-206ENST00000441438 RPAINQ86UA6 219 aa13.11□□□□□ -0.31
SYNE2-206ENST00000441438 G3BP2Q9UN86 482 aaKnown RBP13.11□□□□□ -0.31
SYNE2-206ENST00000441438 ENOX1Q8TC92 643 aaKnown RBP13.11□□□□□ -0.31
SYNE2-206ENST00000441438 KDM5DQ9BY66 1539 aa13.11□□□□□ -0.31
SYNE2-206ENST00000441438 TLDC2A0PJX2 215 aa13.11□□□□□ -0.31
SYNE2-206ENST00000441438 SF3B2Q13435 895 aaKnown RBP13.11□□□□□ -0.31
SYNE2-206ENST00000441438 NLGN1Q8N2Q7 840 aa13.11□□□□□ -0.31
SYNE2-206ENST00000441438 STK26Q9P289 416 aa13.11□□□□□ -0.31
SYNE2-206ENST00000441438 AKNAQ7Z591 1439 aa13.1□□□□□ -0.31
SYNE2-206ENST00000441438 IPO8O15397 1037 aaKnown RBP13.1□□□□□ -0.31
SYNE2-206ENST00000441438 TAF3Q5VWG9 929 aa13.1□□□□□ -0.31
SYNE2-206ENST00000441438 MYCBPQ99417 103 aaPredicted RBP13.1□□□□□ -0.31
SYNE2-206ENST00000441438 ADAMTSL3P82987 1691 aa13.1□□□□□ -0.31
SYNE2-206ENST00000441438 LRRC9Q6ZRR7 1453 aa13.1□□□□□ -0.31
SYNE2-206ENST00000441438 DEPDC5O75140 1603 aa13.09□□□□□ -0.31
SYNE2-206ENST00000441438 TBX4P57082 545 aa13.09□□□□□ -0.31
SYNE2-206ENST00000441438 NOP9Q86U38 636 aaKnown RBP13.09□□□□□ -0.31
SYNE2-206ENST00000441438 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.09□□□□□ -0.31
SYNE2-206ENST00000441438 RSPH9Q9H1X1 276 aaPredicted RBP13.09□□□□□ -0.31
SYNE2-206ENST00000441438 PDE6BP35913 854 aa13.09□□□□□ -0.31
SYNE2-206ENST00000441438 TBC1D2Q9BYX2 928 aa13.09□□□□□ -0.31
SYNE2-206ENST00000441438 QTRT2Q9H974 415 aaKnown RBP13.08□□□□□ -0.32
SYNE2-206ENST00000441438 SAMD9LQ8IVG5 1584 aa13.08□□□□□ -0.32
SYNE2-206ENST00000441438 DNMT1P26358 1616 aaKnown RBP13.07□□□□□ -0.32
SYNE2-206ENST00000441438 ANP32AP39687 249 aaKnown RBP13.07□□□□□ -0.32
SYNE2-206ENST00000441438 PAGR1Q9BTK6 254 aa13.07□□□□□ -0.32
SYNE2-206ENST00000441438 ADGRL2O95490 1459 aa13.07□□□□□ -0.32
SYNE2-206ENST00000441438 SATB1Q01826 763 aa13.07□□□□□ -0.32
SYNE2-206ENST00000441438 PRR29P0C7W0 189 aa13.07□□□□□ -0.32
SYNE2-206ENST00000441438 DHX57Q6P158 1386 aaKnown RBP13.06□□□□□ -0.32
SYNE2-206ENST00000441438 POGZQ7Z3K3 1410 aa13.06□□□□□ -0.32
SYNE2-206ENST00000441438 SMAPO00193 183 aa13.06□□□□□ -0.32
SYNE2-206ENST00000441438 HSP90AA1P07900 732 aaKnown RBP13.06□□□□□ -0.32
SYNE2-206ENST00000441438 ZNF518AQ6AHZ1 1483 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms