RNA–Protein interactions for RNA: ENST00000440127.1

HMGB3P11-201, Transcript of high mobility group box 3 pseudogene 11, humanhuman

BASIC

Gene HMGB3P11, Length 604 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P11-201ENST00000440127 C4orf48Q5BLP8 95 aa6.74□□□□□ -1.33
HMGB3P11-201ENST00000440127 CCDC116Q8IYX3 515 aa6.74□□□□□ -1.33
HMGB3P11-201ENST00000440127 ZIC2O95409 532 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P11-201ENST00000440127 INSM1Q01101 510 aaPredicted RBP6.73□□□□□ -1.33
HMGB3P11-201ENST00000440127 MRPL14Q6P1L8 145 aaKnown RBP6.73□□□□□ -1.33
HMGB3P11-201ENST00000440127 CCDC125Q86Z20 511 aa6.73□□□□□ -1.33
HMGB3P11-201ENST00000440127 STK17AQ9UEE5 414 aa6.73□□□□□ -1.33
HMGB3P11-201ENST00000440127 MCCD1P59942 119 aaPredicted RBP6.72□□□□□ -1.33
HMGB3P11-201ENST00000440127 NFX1Q12986 1120 aaKnown RBP6.72□□□□□ -1.33
HMGB3P11-201ENST00000440127 DZIP3Q86Y13 1208 aaKnown RBP6.72□□□□□ -1.33
HMGB3P11-201ENST00000440127 BMP1P13497 986 aa6.71□□□□□ -1.34
HMGB3P11-201ENST00000440127 GRM5P41594 1212 aa6.71□□□□□ -1.34
HMGB3P11-201ENST00000440127 SLC16A10Q8TF71 515 aa6.71□□□□□ -1.34
HMGB3P11-201ENST00000440127 KCTD15Q96SI1 283 aaPredicted RBP6.71□□□□□ -1.34
HMGB3P11-201ENST00000440127 SNRPBP14678 240 aaKnown RBP6.7□□□□□ -1.34
HMGB3P11-201ENST00000440127 NPAS3Q8IXF0 933 aa6.7□□□□□ -1.34
HMGB3P11-201ENST00000440127 SEPT12Q8IYM1 358 aa6.7□□□□□ -1.34
HMGB3P11-201ENST00000440127 ADAM32Q8TC27 787 aa6.7□□□□□ -1.34
HMGB3P11-201ENST00000440127 TSEN34Q9BSV6 310 aaKnown RBP6.7□□□□□ -1.34
HMGB3P11-201ENST00000440127 TRIM46Q7Z4K8 759 aa6.69□□□□□ -1.34
HMGB3P11-201ENST00000440127 MEIOBQ8N635 442 aa6.69□□□□□ -1.34
HMGB3P11-201ENST00000440127 ITPKCQ96DU7 683 aa6.69□□□□□ -1.34
HMGB3P11-201ENST00000440127 HMX1Q9NP08 348 aaPredicted RBP6.69□□□□□ -1.34
HMGB3P11-201ENST00000440127 NDUFB9Q9Y6M9 179 aa6.69□□□□□ -1.34
HMGB3P11-201ENST00000440127 ZBBXA8MT70 800 aa6.68□□□□□ -1.34
HMGB3P11-201ENST00000440127 TERTO14746 1132 aaKnown RBP6.68□□□□□ -1.34
HMGB3P11-201ENST00000440127 WIPF1O43516 503 aa6.68□□□□□ -1.34
HMGB3P11-201ENST00000440127 NR3C2P08235 984 aa6.68□□□□□ -1.34
HMGB3P11-201ENST00000440127 BMP2P12643 396 aa6.68□□□□□ -1.34
HMGB3P11-201ENST00000440127 LINC00528Q8N1L1 170 aa6.68□□□□□ -1.34
HMGB3P11-201ENST00000440127 ZFP42Q96MM3 310 aa6.68□□□□□ -1.34
HMGB3P11-201ENST00000440127 KLF16Q9BXK1 252 aaPredicted RBP6.68□□□□□ -1.34
HMGB3P11-201ENST00000440127 MAN1A2O60476 641 aa6.67□□□□□ -1.34
HMGB3P11-201ENST00000440127 PPP1R26Q5T8A7 1209 aaPredicted RBP6.67□□□□□ -1.34
HMGB3P11-201ENST00000440127 RNF20Q5VTR2 975 aa6.67□□□□□ -1.34
HMGB3P11-201ENST00000440127 FBXO31Q5XUX0 539 aaPredicted RBP6.67□□□□□ -1.34
HMGB3P11-201ENST00000440127 PURBQ96QR8 312 aaKnown RBP6.67□□□□□ -1.34
HMGB3P11-201ENST00000440127 ZFAND3Q9H8U3 227 aa6.67□□□□□ -1.34
HMGB3P11-201ENST00000440127 TRIM34Q9BYJ4 488 aa6.66□□□□□ -1.34
HMGB3P11-201ENST00000440127 NXF1Q9UBU9 619 aaKnown RBP6.66□□□□□ -1.34
HMGB3P11-201ENST00000440127 INTS6LQ5JSJ4 861 aaKnown RBP6.65□□□□□ -1.34
HMGB3P11-201ENST00000440127 C6orf118Q5T5N4 469 aa6.65□□□□□ -1.34
HMGB3P11-201ENST00000440127 PCDHB9Q9Y5E1 797 aa6.65□□□□□ -1.34
HMGB3P11-201ENST00000440127 NR1H3Q13133 447 aa6.64□□□□□ -1.35
HMGB3P11-201ENST00000440127 EPS8L1Q8TE68 723 aa6.64□□□□□ -1.35
HMGB3P11-201ENST00000440127 IRF7Q92985 503 aa6.64□□□□□ -1.35
HMGB3P11-201ENST00000440127 ESF1Q9H501 851 aaKnown RBP6.64□□□□□ -1.35
HMGB3P11-201ENST00000440127 Q6ZVU0 165 aa6.63□□□□□ -1.35
HMGB3P11-201ENST00000440127 GJD4Q96KN9 370 aaPredicted RBP6.63□□□□□ -1.35
HMGB3P11-201ENST00000440127 ESPNB1AK53 854 aa6.62□□□□□ -1.35
HMGB3P11-201ENST00000440127 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.62□□□□□ -1.35
HMGB3P11-201ENST00000440127 LCE2CQ5TA81 110 aa6.62□□□□□ -1.35
HMGB3P11-201ENST00000440127 TTLL8A6PVC2 850 aa6.61□□□□□ -1.35
HMGB3P11-201ENST00000440127 FBXO45P0C2W1 286 aa6.61□□□□□ -1.35
HMGB3P11-201ENST00000440127 RAB15P59190 212 aa6.61□□□□□ -1.35
HMGB3P11-201ENST00000440127 WWC1Q8IX03 1113 aa6.61□□□□□ -1.35
HMGB3P11-201ENST00000440127 MTMR14Q8NCE2 650 aa6.61□□□□□ -1.35
HMGB3P11-201ENST00000440127 OCSTAMPQ9BR26 566 aa6.61□□□□□ -1.35
HMGB3P11-201ENST00000440127 FAM181BA6NEQ2 426 aa6.6□□□□□ -1.35
HMGB3P11-201ENST00000440127 SPINT1O43278 529 aa6.6□□□□□ -1.35
HMGB3P11-201ENST00000440127 ADH1AP07327 375 aa6.6□□□□□ -1.35
HMGB3P11-201ENST00000440127 EIF4G2P78344 907 aaKnown RBP eCLIP6.6□□□□□ -1.35
HMGB3P11-201ENST00000440127 SOS2Q07890 1332 aaPredicted RBP6.59□□□□□ -1.35
HMGB3P11-201ENST00000440127 ERVH48-1M5A8F1 160 aa6.59□□□□□ -1.35
HMGB3P11-201ENST00000440127 H3BM21 787 aa6.58□□□□□ -1.36
HMGB3P11-201ENST00000440127 ZNF784Q8NCA9 323 aaPredicted RBP6.58□□□□□ -1.36
HMGB3P11-201ENST00000440127 RELBQ01201 579 aa6.57□□□□□ -1.36
HMGB3P11-201ENST00000440127 CBLBQ13191 982 aa6.57□□□□□ -1.36
HMGB3P11-201ENST00000440127 WASHC4Q2M389 1173 aa6.57□□□□□ -1.36
HMGB3P11-201ENST00000440127 CYP2U1Q7Z449 544 aa6.57□□□□□ -1.36
HMGB3P11-201ENST00000440127 POLMQ9NP87 494 aaPredicted RBP6.57□□□□□ -1.36
HMGB3P11-201ENST00000440127 MYCP01106 439 aaPredicted RBP6.56□□□□□ -1.36
HMGB3P11-201ENST00000440127 GMPRP36959 345 aa6.56□□□□□ -1.36
HMGB3P11-201ENST00000440127 VEGFBP49765 207 aa6.56□□□□□ -1.36
HMGB3P11-201ENST00000440127 CC2D2BQ6DHV5 1058 aa6.56□□□□□ -1.36
HMGB3P11-201ENST00000440127 SNRKQ9NRH2 765 aa6.56□□□□□ -1.36
HMGB3P11-201ENST00000440127 ATP5J2-PTCD1G3V325 749 aa6.55□□□□□ -1.36
HMGB3P11-201ENST00000440127 SOX11P35716 441 aa6.55□□□□□ -1.36
HMGB3P11-201ENST00000440127 PTGIRP43119 386 aa6.55□□□□□ -1.36
HMGB3P11-201ENST00000440127 ZSCAN1Q8NBB4 408 aa6.55□□□□□ -1.36
HMGB3P11-201ENST00000440127 CYLDQ9NQC7 956 aa6.55□□□□□ -1.36
HMGB3P11-201ENST00000440127 DNMT3LQ9UJW3 386 aa6.55□□□□□ -1.36
HMGB3P11-201ENST00000440127 GIGYF1O75420 1035 aaPredicted RBP6.54□□□□□ -1.36
HMGB3P11-201ENST00000440127 VSIG8P0DPA2 414 aa6.54□□□□□ -1.36
HMGB3P11-201ENST00000440127 GPC1P35052 558 aa6.54□□□□□ -1.36
HMGB3P11-201ENST00000440127 SIRT1Q96EB6 747 aa6.54□□□□□ -1.36
HMGB3P11-201ENST00000440127 TMPRSS4Q9NRS4 437 aa6.54□□□□□ -1.36
HMGB3P11-201ENST00000440127 PCDHB11Q9Y5F2 797 aa6.54□□□□□ -1.36
HMGB3P11-201ENST00000440127 LILRA1O75019 489 aa6.53□□□□□ -1.36
HMGB3P11-201ENST00000440127 ERVK-9P63128 1117 aa6.53□□□□□ -1.36
HMGB3P11-201ENST00000440127 FLIIQ13045 1269 aa6.53□□□□□ -1.36
HMGB3P11-201ENST00000440127 SLFNL1Q499Z3 407 aa6.53□□□□□ -1.36
HMGB3P11-201ENST00000440127 AGBL1Q96MI9 1066 aa6.53□□□□□ -1.36
HMGB3P11-201ENST00000440127 NLRP3Q96P20 1036 aa6.53□□□□□ -1.36
HMGB3P11-201ENST00000440127 INSM2Q96T92 566 aaPredicted RBP6.53□□□□□ -1.36
HMGB3P11-201ENST00000440127 TBC1D2BQ9UPU7 963 aa6.53□□□□□ -1.36
HMGB3P11-201ENST00000440127 SOBPA7XYQ1 873 aa6.52□□□□□ -1.37
HMGB3P11-201ENST00000440127 RAD21O60216 631 aa6.52□□□□□ -1.37
HMGB3P11-201ENST00000440127 PPFIA3O75145 1194 aa6.52□□□□□ -1.37
HMGB3P11-201ENST00000440127 GTF2E1P29083 439 aaPredicted RBP6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 984.4 ms