RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 LEKR1Q6ZMV7 388 aa13.21□□□□□ -0.29
SCN4A-201ENST00000435607 ZPR1O75312 459 aa13.21□□□□□ -0.29
SCN4A-201ENST00000435607 PLCD4Q9BRC7 762 aa13.21□□□□□ -0.29
SCN4A-201ENST00000435607 RRBP1Q9P2E9 1410 aaKnown RBP13.21□□□□□ -0.29
SCN4A-201ENST00000435607 CRACR2BQ8N4Y2 399 aaPredicted RBP13.21□□□□□ -0.3
SCN4A-201ENST00000435607 SEC63Q9UGP8 760 aaKnown RBP13.21□□□□□ -0.3
SCN4A-201ENST00000435607 ABCC8Q09428 1581 aa13.21□□□□□ -0.3
SCN4A-201ENST00000435607 TDO2P48775 406 aa13.21□□□□□ -0.3
SCN4A-201ENST00000435607 KIAA0754O94854 1291 aa13.2□□□□□ -0.3
SCN4A-201ENST00000435607 TAX1BP1Q86VP1 789 aa13.2□□□□□ -0.3
SCN4A-201ENST00000435607 WDR78Q5VTH9 848 aa13.2□□□□□ -0.3
SCN4A-201ENST00000435607 WASF1Q92558 559 aa13.2□□□□□ -0.3
SCN4A-201ENST00000435607 CCDC39Q9UFE4 941 aa13.2□□□□□ -0.3
SCN4A-201ENST00000435607 RAPGEF2Q9Y4G8 1499 aa13.2□□□□□ -0.3
SCN4A-201ENST00000435607 SERPINC1P01008 464 aa13.2□□□□□ -0.3
SCN4A-201ENST00000435607 PPM1EQ8WY54 764 aa13.2□□□□□ -0.3
SCN4A-201ENST00000435607 NUP133Q8WUM0 1156 aa13.2□□□□□ -0.3
SCN4A-201ENST00000435607 CTNNA3Q9UI47 895 aa13.2□□□□□ -0.3
SCN4A-201ENST00000435607 STARD3NLO95772 234 aa13.19□□□□□ -0.3
SCN4A-201ENST00000435607 COMMD10Q9Y6G5 202 aa13.19□□□□□ -0.3
SCN4A-201ENST00000435607 RRP1P56182 461 aaKnown RBP13.19□□□□□ -0.3
SCN4A-201ENST00000435607 SLF2Q8IX21 1173 aa13.19□□□□□ -0.3
SCN4A-201ENST00000435607 PRDM11Q9NQV5 511 aa13.19□□□□□ -0.3
SCN4A-201ENST00000435607 GNAI2P04899 355 aa13.19□□□□□ -0.3
SCN4A-201ENST00000435607 CRBNQ96SW2 442 aa13.19□□□□□ -0.3
SCN4A-201ENST00000435607 CBFA2T2O43439 604 aa13.19□□□□□ -0.3
SCN4A-201ENST00000435607 USP5P45974 858 aa13.19□□□□□ -0.3
SCN4A-201ENST00000435607 LRP2BPQ9P2M1 347 aa13.19□□□□□ -0.3
SCN4A-201ENST00000435607 SSX2IPQ9Y2D8 614 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 CUL5Q93034 780 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 ZNF397Q8NF99 534 aaPredicted RBP13.18□□□□□ -0.3
SCN4A-201ENST00000435607 LNPKQ9C0E8 428 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 WDR70Q9NW82 654 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 RAI14Q9P0K7 980 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 MBD3O95983 291 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 FERMT1Q9BQL6 677 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 CEP131Q9UPN4 1083 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 KAT6BQ8WYB5 2073 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 MTHFSP49914 203 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 FMNL2Q96PY5 1086 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 USP47Q96K76 1375 aa13.18□□□□□ -0.3
SCN4A-201ENST00000435607 AEBP1Q8IUX7 1158 aa13.17□□□□□ -0.3
SCN4A-201ENST00000435607 TAF4BQ92750 862 aa13.17□□□□□ -0.3
SCN4A-201ENST00000435607 POGZQ7Z3K3 1410 aa13.17□□□□□ -0.3
SCN4A-201ENST00000435607 PDE4AP27815 886 aa13.17□□□□□ -0.3
SCN4A-201ENST00000435607 CEP57L1Q8IYX8 460 aa13.17□□□□□ -0.3
SCN4A-201ENST00000435607 ANKLE2Q86XL3 938 aa13.17□□□□□ -0.3
SCN4A-201ENST00000435607 C16orf71Q8IYS4 520 aaPredicted RBP13.17□□□□□ -0.3
SCN4A-201ENST00000435607 SLC26A8Q96RN1 970 aa13.16□□□□□ -0.3
SCN4A-201ENST00000435607 GSE1Q14687 1217 aa13.16□□□□□ -0.3
SCN4A-201ENST00000435607 MTERF4Q7Z6M4 381 aaKnown RBP13.16□□□□□ -0.3
SCN4A-201ENST00000435607 CAVIN4Q5BKX8 364 aa13.16□□□□□ -0.3
SCN4A-201ENST00000435607 GIGYF2Q6Y7W6 1299 aaKnown RBP13.16□□□□□ -0.3
SCN4A-201ENST00000435607 LRRC45Q96CN5 670 aa13.16□□□□□ -0.3
SCN4A-201ENST00000435607 CYP46A1Q9Y6A2 500 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 ERLIN1O75477 346 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 ATF7IPQ6VMQ6 1270 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 C22orf23Q9BZE7 217 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 EIF3JO75822 258 aaKnown RBP13.15□□□□□ -0.3
SCN4A-201ENST00000435607 FERMT2Q96AC1 680 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 ZNF692Q9BU19 519 aaPredicted RBP13.15□□□□□ -0.3
SCN4A-201ENST00000435607 CEP126Q9P2H0 1117 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 HDGFL1Q5TGJ6 251 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 VPS36Q86VN1 386 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 RAB34Q9BZG1 259 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 NF2P35240 595 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 STK11IPQ8N1F8 1099 aa13.15□□□□□ -0.3
SCN4A-201ENST00000435607 CCT4P50991 539 aaKnown RBP13.14□□□□□ -0.31
SCN4A-201ENST00000435607 FKBP4Q02790 459 aaKnown RBP eCLIP13.14□□□□□ -0.31
SCN4A-201ENST00000435607 FHOD3Q2V2M9 1422 aa13.14□□□□□ -0.31
SCN4A-201ENST00000435607 POLR3DP05423 398 aaPredicted RBP13.14□□□□□ -0.31
SCN4A-201ENST00000435607 HOOK3Q86VS8 718 aa13.14□□□□□ -0.31
SCN4A-201ENST00000435607 CENPHQ9H3R5 247 aa13.14□□□□□ -0.31
SCN4A-201ENST00000435607 MAP3K9P80192 1104 aa13.14□□□□□ -0.31
SCN4A-201ENST00000435607 ANKRD18BA2A2Z9 1011 aa13.14□□□□□ -0.31
SCN4A-201ENST00000435607 FGFR1OPO95684 399 aaKnown RBP13.13□□□□□ -0.31
SCN4A-201ENST00000435607 ME1P48163 572 aa13.13□□□□□ -0.31
SCN4A-201ENST00000435607 CA8P35219 290 aa13.13□□□□□ -0.31
SCN4A-201ENST00000435607 LRSAM1Q6UWE0 723 aa13.13□□□□□ -0.31
SCN4A-201ENST00000435607 TSG101Q99816 390 aa13.13□□□□□ -0.31
SCN4A-201ENST00000435607 CCDC66A2RUB6 948 aa13.13□□□□□ -0.31
SCN4A-201ENST00000435607 FYCO1Q9BQS8 1478 aa13.13□□□□□ -0.31
SCN4A-201ENST00000435607 KANK4Q5T7N3 995 aaPredicted RBP13.13□□□□□ -0.31
SCN4A-201ENST00000435607 FAM43AQ8N2R8 423 aa13.13□□□□□ -0.31
SCN4A-201ENST00000435607 MKNK2Q9HBH9 465 aa13.13□□□□□ -0.31
SCN4A-201ENST00000435607 PDIA4P13667 645 aaKnown RBP13.12□□□□□ -0.31
SCN4A-201ENST00000435607 ZNF530Q6P9A1 599 aaPredicted RBP13.12□□□□□ -0.31
SCN4A-201ENST00000435607 RPGRQ92834 1020 aaKnown RBP13.12□□□□□ -0.31
SCN4A-201ENST00000435607 ANKIB1Q9P2G1 1089 aa13.12□□□□□ -0.31
SCN4A-201ENST00000435607 GOLGA6L10A0A0M3HER8 536 aa13.12□□□□□ -0.31
SCN4A-201ENST00000435607 BICDL1Q6ZP65 573 aa13.12□□□□□ -0.31
SCN4A-201ENST00000435607 EIF5P55010 431 aaKnown RBP13.12□□□□□ -0.31
SCN4A-201ENST00000435607 PIBF1Q8WXW3 757 aa13.12□□□□□ -0.31
SCN4A-201ENST00000435607 KIAA1328Q86T90 577 aa13.12□□□□□ -0.31
SCN4A-201ENST00000435607 SRCIN1Q9C0H9 1055 aa13.12□□□□□ -0.31
SCN4A-201ENST00000435607 GGNBP2Q9H3C7 697 aa13.12□□□□□ -0.31
SCN4A-201ENST00000435607 MYL6BP14649 208 aa13.11□□□□□ -0.31
SCN4A-201ENST00000435607 KRT32Q14532 448 aa13.11□□□□□ -0.31
SCN4A-201ENST00000435607 KIF20AO95235 890 aa13.11□□□□□ -0.31
SCN4A-201ENST00000435607 CETN1Q12798 172 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms