RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 RTL1A6NKG5 1358 aa23.11■■□□□ 1.29
COL7A1-202ENST00000422991 FAM83GA6ND36 823 aa23.1■■□□□ 1.29
COL7A1-202ENST00000422991 RXRBP28702 533 aa23.1■■□□□ 1.29
COL7A1-202ENST00000422991 RRS1Q15050 365 aaKnown RBP23.1■■□□□ 1.29
COL7A1-202ENST00000422991 CHRNA2Q15822 529 aa23.1■■□□□ 1.29
COL7A1-202ENST00000422991 ZBTB7CA1YPR0 619 aa23.09■■□□□ 1.29
COL7A1-202ENST00000422991 KIF24Q5T7B8 1368 aa23.09■■□□□ 1.29
COL7A1-202ENST00000422991 CAMTA1Q9Y6Y1 1673 aa23.09■■□□□ 1.29
COL7A1-202ENST00000422991 FNBP4Q8N3X1 1017 aaPredicted RBP23.08■■□□□ 1.29
COL7A1-202ENST00000422991 QTRT2Q9H974 415 aaKnown RBP23.07■■□□□ 1.28
COL7A1-202ENST00000422991 POLKQ9UBT6 870 aa23.07■■□□□ 1.28
COL7A1-202ENST00000422991 EMILIN1Q9Y6C2 1016 aa23.07■■□□□ 1.28
COL7A1-202ENST00000422991 CDK12Q9NYV4 1490 aaPredicted RBP23.06■■□□□ 1.28
COL7A1-202ENST00000422991 USP21Q9UK80 565 aa23.06■■□□□ 1.28
COL7A1-202ENST00000422991 BLMP54132 1417 aaPredicted RBP23.06■■□□□ 1.28
COL7A1-202ENST00000422991 COL5A2P05997 1499 aaPredicted RBP23.05■■□□□ 1.28
COL7A1-202ENST00000422991 FLT4P35916 1363 aa23.05■■□□□ 1.28
COL7A1-202ENST00000422991 BCL9LQ86UU0 1499 aa23.05■■□□□ 1.28
COL7A1-202ENST00000422991 RALBP1Q15311 655 aa23.04■■□□□ 1.28
COL7A1-202ENST00000422991 FAM208AQ9UK61 1670 aaKnown RBP23.03■■□□□ 1.28
COL7A1-202ENST00000422991 HOXC9P31274 260 aa23.03■■□□□ 1.28
COL7A1-202ENST00000422991 AMPHP49418 695 aa23.03■■□□□ 1.28
COL7A1-202ENST00000422991 RBM6P78332 1123 aaKnown RBP23.03■■□□□ 1.28
COL7A1-202ENST00000422991 IP6K1Q92551 441 aa23.03■■□□□ 1.28
COL7A1-202ENST00000422991 BTG4Q9NY30 223 aa23.03■■□□□ 1.28
COL7A1-202ENST00000422991 AXIN2Q9Y2T1 843 aa23.03■■□□□ 1.28
COL7A1-202ENST00000422991 PRKRIP1Q9H875 184 aaPredicted RBP23.02■■□□□ 1.28
COL7A1-202ENST00000422991 TRPC5Q9UL62 973 aaPredicted RBP23.02■■□□□ 1.28
COL7A1-202ENST00000422991 PPP2R1AP30153 589 aa23.01■■□□□ 1.27
COL7A1-202ENST00000422991 INSRP06213 1382 aa23.01■■□□□ 1.27
COL7A1-202ENST00000422991 PPM1GO15355 546 aaPredicted RBP23■■□□□ 1.27
COL7A1-202ENST00000422991 MTHFSP49914 203 aa22.99■■□□□ 1.27
COL7A1-202ENST00000422991 COL3A1P02461 1466 aaPredicted RBP22.98■■□□□ 1.27
COL7A1-202ENST00000422991 UNC5CLQ8IV45 518 aa22.98■■□□□ 1.27
COL7A1-202ENST00000422991 ERBB3P21860 1342 aa22.98■■□□□ 1.27
COL7A1-202ENST00000422991 ATRNO75882 1429 aa22.98■■□□□ 1.27
COL7A1-202ENST00000422991 RGPD2P0DJD1 1756 aa22.97■■□□□ 1.27
COL7A1-202ENST00000422991 HSP90AB2PQ58FF8 381 aa22.97■■□□□ 1.27
COL7A1-202ENST00000422991 MYBBP1AQ9BQG0 1328 aaKnown RBP22.97■■□□□ 1.27
COL7A1-202ENST00000422991 ANP32CO43423 234 aa22.95■■□□□ 1.26
COL7A1-202ENST00000422991 WDR17Q8IZU2 1322 aa22.95■■□□□ 1.26
COL7A1-202ENST00000422991 ANKRD24Q8TF21 1146 aa22.95■■□□□ 1.26
COL7A1-202ENST00000422991 RGS12O14924 1447 aa22.94■■□□□ 1.26
COL7A1-202ENST00000422991 STRN4Q9NRL3 753 aa22.94■■□□□ 1.26
COL7A1-202ENST00000422991 CRB1P82279 1406 aa22.93■■□□□ 1.26
COL7A1-202ENST00000422991 DIEXFQ68CQ4 756 aaKnown RBP22.93■■□□□ 1.26
COL7A1-202ENST00000422991 WNK3Q9BYP7 1800 aa22.93■■□□□ 1.26
COL7A1-202ENST00000422991 RGPD1P0DJD0 1748 aa22.93■■□□□ 1.26
COL7A1-202ENST00000422991 EVA1CP58658 441 aa22.92■■□□□ 1.26
COL7A1-202ENST00000422991 LARP1Q6PKG0 1096 aaKnown RBP22.92■■□□□ 1.26
COL7A1-202ENST00000422991 GLI3P10071 1580 aa22.92■■□□□ 1.26
COL7A1-202ENST00000422991 VPS72Q15906 364 aa22.91■■□□□ 1.26
COL7A1-202ENST00000422991 LTV1Q96GA3 475 aaPredicted RBP22.91■■□□□ 1.26
COL7A1-202ENST00000422991 CSB-PGBD3P0DP91 1061 aa22.9■■□□□ 1.26
COL7A1-202ENST00000422991 EIF4A2Q14240 407 aaKnown RBP22.9■■□□□ 1.26
COL7A1-202ENST00000422991 GJD4Q96KN9 370 aaPredicted RBP22.89■■□□□ 1.25
COL7A1-202ENST00000422991 SPATA31A5Q5VU36 1347 aa22.88■■□□□ 1.25
COL7A1-202ENST00000422991 SPATA31A7Q8IWB4 1347 aa22.88■■□□□ 1.25
COL7A1-202ENST00000422991 CFAP53Q96M91 514 aa22.88■■□□□ 1.25
COL7A1-202ENST00000422991 NCAPD2Q15021 1401 aa22.88■■□□□ 1.25
COL7A1-202ENST00000422991 SPATA31A1Q5TZJ5 1347 aa22.87■■□□□ 1.25
COL7A1-202ENST00000422991 TOM1L2Q6ZVM7 507 aa22.87■■□□□ 1.25
COL7A1-202ENST00000422991 IL13P35225 146 aa22.86■■□□□ 1.25
COL7A1-202ENST00000422991 NLRP2Q9NX02 1062 aa22.86■■□□□ 1.25
COL7A1-202ENST00000422991 DIAPH1O60610 1272 aaKnown RBP22.85■■□□□ 1.25
COL7A1-202ENST00000422991 CARD10Q9BWT7 1032 aa22.85■■□□□ 1.25
COL7A1-202ENST00000422991 CCDC9Q9Y3X0 531 aaKnown RBP22.85■■□□□ 1.25
COL7A1-202ENST00000422991 NBPF6Q5VWK0 638 aa22.84■■□□□ 1.25
COL7A1-202ENST00000422991 UPF1Q92900 1129 aaKnown RBP eCLIP22.84■■□□□ 1.25
COL7A1-202ENST00000422991 NBPF4Q96M43 638 aa22.84■■□□□ 1.25
COL7A1-202ENST00000422991 THSD7AQ9UPZ6 1657 aa22.84■■□□□ 1.25
COL7A1-202ENST00000422991 IGSF1Q8N6C5 1336 aa22.82■■□□□ 1.24
COL7A1-202ENST00000422991 EYA1Q99502 592 aa22.82■■□□□ 1.24
COL7A1-202ENST00000422991 PARP4Q9UKK3 1724 aaKnown RBP22.82■■□□□ 1.24
COL7A1-202ENST00000422991 TCP11L2Q8N4U5 519 aa22.81■■□□□ 1.24
COL7A1-202ENST00000422991 USP35Q9P2H5 1018 aa22.81■■□□□ 1.24
COL7A1-202ENST00000422991 DISP2A7MBM2 1401 aa22.81■■□□□ 1.24
COL7A1-202ENST00000422991 USHBP1Q8N6Y0 703 aa22.8■■□□□ 1.24
COL7A1-202ENST00000422991 THRAP3Q9Y2W1 955 aaKnown RBP22.8■■□□□ 1.24
COL7A1-202ENST00000422991 LRRC37A3O60309 1634 aa22.79■■□□□ 1.24
COL7A1-202ENST00000422991 KDRP35968 1356 aa22.78■■□□□ 1.24
COL7A1-202ENST00000422991 BARGINQ6ZT62 677 aa22.78■■□□□ 1.24
COL7A1-202ENST00000422991 MEGF6O75095 1541 aa22.77■■□□□ 1.24
COL7A1-202ENST00000422991 CCDC184Q52MB2 194 aa22.77■■□□□ 1.24
COL7A1-202ENST00000422991 FAM98CQ17RN3 349 aaKnown RBP22.76■■□□□ 1.23
COL7A1-202ENST00000422991 NUDCQ9Y266 331 aa22.76■■□□□ 1.23
COL7A1-202ENST00000422991 PKD1L3Q7Z443 1732 aa22.75■■□□□ 1.23
COL7A1-202ENST00000422991 U2SURPO15042 1029 aaKnown RBP22.75■■□□□ 1.23
COL7A1-202ENST00000422991 ONECUT3O60422 494 aaPredicted RBP22.74■■□□□ 1.23
COL7A1-202ENST00000422991 AEBP1Q8IUX7 1158 aa22.74■■□□□ 1.23
COL7A1-202ENST00000422991 SHANK3Q9BYB0 1731 aa22.74■■□□□ 1.23
COL7A1-202ENST00000422991 OVOS2A0A0G2JMS6 1433 aa22.74■■□□□ 1.23
COL7A1-202ENST00000422991 BRWD3Q6RI45 1802 aa22.73■■□□□ 1.23
COL7A1-202ENST00000422991 EP400Q96L91 3159 aa22.73■■□□□ 1.23
COL7A1-202ENST00000422991 MRS2Q9HD23 443 aa22.73■■□□□ 1.23
COL7A1-202ENST00000422991 IL2RBP14784 551 aa22.72■■□□□ 1.23
COL7A1-202ENST00000422991 SULT6B1Q6IMI4 303 aa22.72■■□□□ 1.23
COL7A1-202ENST00000422991 MIER1Q8N108 512 aa22.72■■□□□ 1.23
COL7A1-202ENST00000422991 CDCA7Q9BWT1 371 aaPredicted RBP22.72■■□□□ 1.23
COL7A1-202ENST00000422991 PLEKHG2Q9H7P9 1386 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms