RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 EFCAB6Q5THR3 1501 aa13.18□□□□□ -0.3
USP54-204ENST00000422491 PRPF40AO75400 957 aaKnown RBP13.18□□□□□ -0.3
USP54-204ENST00000422491 PUS7Q96PZ0 661 aaKnown RBP13.18□□□□□ -0.3
USP54-204ENST00000422491 CWC22Q9HCG8 908 aaKnown RBP13.18□□□□□ -0.3
USP54-204ENST00000422491 TMEM63CQ9P1W3 806 aa13.18□□□□□ -0.3
USP54-204ENST00000422491 PTCH1Q13635 1447 aa13.18□□□□□ -0.3
USP54-204ENST00000422491 C14orf93Q9H972 538 aaKnown RBP13.18□□□□□ -0.3
USP54-204ENST00000422491 ZDHHC9Q9Y397 364 aa13.18□□□□□ -0.3
USP54-204ENST00000422491 TULP4Q9NRJ4 1543 aa13.18□□□□□ -0.3
USP54-204ENST00000422491 ZNF428Q96B54 188 aa13.17□□□□□ -0.3
USP54-204ENST00000422491 PODXL2Q9NZ53 605 aa13.17□□□□□ -0.3
USP54-204ENST00000422491 USP26Q9BXU7 913 aa13.17□□□□□ -0.3
USP54-204ENST00000422491 CHMP4BQ9H444 224 aaKnown RBP13.17□□□□□ -0.3
USP54-204ENST00000422491 FANCAO15360 1455 aa13.17□□□□□ -0.3
USP54-204ENST00000422491 ATP7AQ04656 1500 aa13.16□□□□□ -0.3
USP54-204ENST00000422491 KIF3BO15066 747 aa13.16□□□□□ -0.3
USP54-204ENST00000422491 PLEKHM2Q8IWE5 1019 aa13.16□□□□□ -0.3
USP54-204ENST00000422491 ZGPATQ8N5A5 531 aaKnown RBP13.16□□□□□ -0.3
USP54-204ENST00000422491 ARHGAP45Q92619 1136 aa13.16□□□□□ -0.3
USP54-204ENST00000422491 PPLO60437 1756 aa13.16□□□□□ -0.3
USP54-204ENST00000422491 SYCE3A1L190 88 aa13.15□□□□□ -0.3
USP54-204ENST00000422491 NSFL1CQ9UNZ2 370 aaKnown RBP13.15□□□□□ -0.3
USP54-204ENST00000422491 TMEM132EQ6IEE7 984 aa13.15□□□□□ -0.31
USP54-204ENST00000422491 MRPL50Q8N5N7 158 aaKnown RBP13.15□□□□□ -0.31
USP54-204ENST00000422491 CFAP44Q96MT7 982 aa13.15□□□□□ -0.31
USP54-204ENST00000422491 CCDC94Q9BW85 323 aaPredicted RBP13.15□□□□□ -0.31
USP54-204ENST00000422491 ABCC4O15439 1325 aa13.14□□□□□ -0.31
USP54-204ENST00000422491 ARAP3Q8WWN8 1544 aa13.14□□□□□ -0.31
USP54-204ENST00000422491 ARID3AQ99856 593 aa13.14□□□□□ -0.31
USP54-204ENST00000422491 TTC22Q5TAA0 569 aa13.14□□□□□ -0.31
USP54-204ENST00000422491 EVC2Q86UK5 1308 aa13.14□□□□□ -0.31
USP54-204ENST00000422491 CHAMP1Q96JM3 812 aa13.13□□□□□ -0.31
USP54-204ENST00000422491 ZCCHC11Q5TAX3 1644 aaKnown RBP13.13□□□□□ -0.31
USP54-204ENST00000422491 VAMP4O75379 141 aa13.13□□□□□ -0.31
USP54-204ENST00000422491 UTP14CQ5TAP6 766 aaKnown RBP13.13□□□□□ -0.31
USP54-204ENST00000422491 MYRIPQ8NFW9 859 aa13.13□□□□□ -0.31
USP54-204ENST00000422491 A0A1W2PP64 1363 aa13.13□□□□□ -0.31
USP54-204ENST00000422491 KNDC1Q76NI1 1749 aa13.13□□□□□ -0.31
USP54-204ENST00000422491 ARHGEF28Q8N1W1 1705 aaKnown RBP13.12□□□□□ -0.31
USP54-204ENST00000422491 GLI2P10070 1586 aa13.12□□□□□ -0.31
USP54-204ENST00000422491 ST18O60284 1047 aa13.12□□□□□ -0.31
USP54-204ENST00000422491 DMTNQ08495 405 aa13.12□□□□□ -0.31
USP54-204ENST00000422491 PRDM10Q9NQV6 1147 aa13.12□□□□□ -0.31
USP54-204ENST00000422491 ANKRD26Q9UPS8 1709 aa13.12□□□□□ -0.31
USP54-204ENST00000422491 PNPLA6Q8IY17 1366 aa13.11□□□□□ -0.31
USP54-204ENST00000422491 ZSCAN20P17040 1043 aaPredicted RBP13.11□□□□□ -0.31
USP54-204ENST00000422491 KIAA2012Q0VF49 1180 aa13.11□□□□□ -0.31
USP54-204ENST00000422491 INTS3Q68E01 1043 aaKnown RBP13.11□□□□□ -0.31
USP54-204ENST00000422491 GGNBP2Q9H3C7 697 aa13.11□□□□□ -0.31
USP54-204ENST00000422491 LRRC7Q96NW7 1537 aa13.11□□□□□ -0.31
USP54-204ENST00000422491 MBD3O95983 291 aa13.11□□□□□ -0.31
USP54-204ENST00000422491 RNF214Q8ND24 703 aa13.11□□□□□ -0.31
USP54-204ENST00000422491 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.11□□□□□ -0.31
USP54-204ENST00000422491 ERCC6L2Q5T890 1561 aa13.11□□□□□ -0.31
USP54-204ENST00000422491 LMTK2Q8IWU2 1503 aa13.11□□□□□ -0.31
USP54-204ENST00000422491 YEATS2Q9ULM3 1422 aa13.11□□□□□ -0.31
USP54-204ENST00000422491 DCTPP1Q9H773 170 aa13.1□□□□□ -0.31
USP54-204ENST00000422491 CABP2Q9NPB3 220 aa13.1□□□□□ -0.31
USP54-204ENST00000422491 CDC42BPGQ6DT37 1551 aa13.1□□□□□ -0.31
USP54-204ENST00000422491 DIAPH1O60610 1272 aaKnown RBP13.09□□□□□ -0.31
USP54-204ENST00000422491 TSPYL6Q8N831 410 aa13.09□□□□□ -0.31
USP54-204ENST00000422491 ZNF710Q8N1W2 664 aa13.09□□□□□ -0.31
USP54-204ENST00000422491 ZHX1Q9UKY1 873 aaPredicted RBP13.09□□□□□ -0.31
USP54-204ENST00000422491 FAM135BQ49AJ0 1406 aa13.09□□□□□ -0.31
USP54-204ENST00000422491 GTF2F1P35269 517 aaKnown RBP eCLIP13.09□□□□□ -0.31
USP54-204ENST00000422491 C16orf71Q8IYS4 520 aaPredicted RBP13.09□□□□□ -0.31
USP54-204ENST00000422491 CHGAP10645 457 aaKnown RBP13.08□□□□□ -0.32
USP54-204ENST00000422491 JARID2Q92833 1246 aaPredicted RBP13.08□□□□□ -0.32
USP54-204ENST00000422491 PRIMPOLQ96LW4 560 aa13.08□□□□□ -0.32
USP54-204ENST00000422491 TSPY26PQ9H489 355 aa13.08□□□□□ -0.32
USP54-204ENST00000422491 FYB1O15117 783 aa13.08□□□□□ -0.32
USP54-204ENST00000422491 FCHSD2O94868 740 aa13.08□□□□□ -0.32
USP54-204ENST00000422491 SDSP20132 328 aa13.08□□□□□ -0.32
USP54-204ENST00000422491 PTMAP06454 111 aaKnown RBP13.07□□□□□ -0.32
USP54-204ENST00000422491 BRD1O95696 1058 aa13.07□□□□□ -0.32
USP54-204ENST00000422491 OTUD7AQ8TE49 926 aaPredicted RBP13.07□□□□□ -0.32
USP54-204ENST00000422491 PIBF1Q8WXW3 757 aa13.07□□□□□ -0.32
USP54-204ENST00000422491 KIF24Q5T7B8 1368 aa13.07□□□□□ -0.32
USP54-204ENST00000422491 ATAD2Q6PL18 1390 aa13.07□□□□□ -0.32
USP54-204ENST00000422491 HMGN5P82970 282 aaKnown RBP13.06□□□□□ -0.32
USP54-204ENST00000422491 ATP10DQ9P241 1426 aa13.06□□□□□ -0.32
USP54-204ENST00000422491 CD163L1Q9NR16 1453 aa13.05□□□□□ -0.32
USP54-204ENST00000422491 CAMSAP1Q5T5Y3 1602 aa13.05□□□□□ -0.32
USP54-204ENST00000422491 ABCA9Q8IUA7 1624 aa13.05□□□□□ -0.32
USP54-204ENST00000422491 PRKAR2BP31323 418 aa13.05□□□□□ -0.32
USP54-204ENST00000422491 TSC1Q92574 1164 aa13.05□□□□□ -0.32
USP54-204ENST00000422491 RPGRIP1LQ68CZ1 1315 aa13.05□□□□□ -0.32
USP54-204ENST00000422491 REC8O95072 547 aa13.05□□□□□ -0.32
USP54-204ENST00000422491 ZNF853P0CG23 659 aa13.05□□□□□ -0.32
USP54-204ENST00000422491 FOXD4L5Q5VV16 416 aaPredicted RBP13.05□□□□□ -0.32
USP54-204ENST00000422491 CASC1Q6TDU7 716 aa13.05□□□□□ -0.32
USP54-204ENST00000422491 FOXD4L4Q8WXT5 416 aaPredicted RBP13.05□□□□□ -0.32
USP54-204ENST00000422491 THUMPD2Q9BTF0 503 aaKnown RBP13.05□□□□□ -0.32
USP54-204ENST00000422491 API5Q9BZZ5 524 aaKnown RBP13.05□□□□□ -0.32
USP54-204ENST00000422491 CHD1O14646 1710 aa13.05□□□□□ -0.32
USP54-204ENST00000422491 DNTTIP2Q5QJE6 756 aaKnown RBP13.04□□□□□ -0.32
USP54-204ENST00000422491 TMX3Q96JJ7 454 aa13.04□□□□□ -0.32
USP54-204ENST00000422491 IFT57Q9NWB7 429 aa13.04□□□□□ -0.32
USP54-204ENST00000422491 UHRF1BP1LA0JNW5 1464 aa13.04□□□□□ -0.32
USP54-204ENST00000422491 ZFYVE9O95405 1425 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms