RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 CCDC184Q52MB2 194 aa7.98□□□□□ -1.13
HMGB3-202ENST00000419110 NGDNQ8NEJ9 315 aaKnown RBP7.98□□□□□ -1.13
HMGB3-202ENST00000419110 IQSEC2Q5JU85 1478 aa7.98□□□□□ -1.13
HMGB3-202ENST00000419110 ROBO1Q9Y6N7 1651 aa7.98□□□□□ -1.13
HMGB3-202ENST00000419110 ZBED9Q6R2W3 1325 aa7.98□□□□□ -1.13
HMGB3-202ENST00000419110 ABCC6O95255 1503 aa7.98□□□□□ -1.13
HMGB3-202ENST00000419110 AATKQ6ZMQ8 1374 aa7.97□□□□□ -1.13
HMGB3-202ENST00000419110 DLG5Q8TDM6 1919 aa7.97□□□□□ -1.13
HMGB3-202ENST00000419110 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.97□□□□□ -1.13
HMGB3-202ENST00000419110 COG3Q96JB2 828 aa7.97□□□□□ -1.13
HMGB3-202ENST00000419110 GGNBP2Q9H3C7 697 aa7.97□□□□□ -1.13
HMGB3-202ENST00000419110 PHF8Q9UPP1 1060 aa7.97□□□□□ -1.13
HMGB3-202ENST00000419110 TTC21BQ7Z4L5 1316 aa7.97□□□□□ -1.13
HMGB3-202ENST00000419110 VIRMAQ69YN4 1812 aaKnown RBP7.96□□□□□ -1.13
HMGB3-202ENST00000419110 LTBP4Q8N2S1 1624 aa7.96□□□□□ -1.13
HMGB3-202ENST00000419110 CAMTA1Q9Y6Y1 1673 aa7.96□□□□□ -1.13
HMGB3-202ENST00000419110 ATF3P18847 181 aa7.96□□□□□ -1.14
HMGB3-202ENST00000419110 CADPS2Q86UW7 1296 aa7.96□□□□□ -1.14
HMGB3-202ENST00000419110 RTL1A6NKG5 1358 aa7.96□□□□□ -1.14
HMGB3-202ENST00000419110 USP31Q70CQ4 1352 aa7.96□□□□□ -1.14
HMGB3-202ENST00000419110 TNS3Q68CZ2 1445 aa7.95□□□□□ -1.14
HMGB3-202ENST00000419110 PXDNQ92626 1479 aa7.95□□□□□ -1.14
HMGB3-202ENST00000419110 TNNT2P45379 298 aaPredicted RBP7.95□□□□□ -1.14
HMGB3-202ENST00000419110 NME9Q86XW9 330 aa7.95□□□□□ -1.14
HMGB3-202ENST00000419110 RASEFQ8IZ41 740 aa7.95□□□□□ -1.14
HMGB3-202ENST00000419110 PELP1Q8IZL8 1130 aaKnown RBP7.95□□□□□ -1.14
HMGB3-202ENST00000419110 PMFBP1Q8TBY8 1022 aa7.95□□□□□ -1.14
HMGB3-202ENST00000419110 PNISRQ8TF01 805 aaKnown RBP7.95□□□□□ -1.14
HMGB3-202ENST00000419110 C19orf44Q9H6X5 657 aa7.95□□□□□ -1.14
HMGB3-202ENST00000419110 ZNF335Q9H4Z2 1342 aaPredicted RBP7.95□□□□□ -1.14
HMGB3-202ENST00000419110 AHDC1Q5TGY3 1603 aaPredicted RBP7.95□□□□□ -1.14
HMGB3-202ENST00000419110 PHLPP1O60346 1717 aa7.95□□□□□ -1.14
HMGB3-202ENST00000419110 RGPD5Q99666 1765 aa7.94□□□□□ -1.14
HMGB3-202ENST00000419110 FYB1O15117 783 aa7.94□□□□□ -1.14
HMGB3-202ENST00000419110 ASTLQ6HA08 431 aaPredicted RBP7.94□□□□□ -1.14
HMGB3-202ENST00000419110 KIF12Q96FN5 646 aa7.94□□□□□ -1.14
HMGB3-202ENST00000419110 ZBTB47Q9UFB7 747 aaPredicted RBP7.94□□□□□ -1.14
HMGB3-202ENST00000419110 KIF24Q5T7B8 1368 aa7.94□□□□□ -1.14
HMGB3-202ENST00000419110 RGPD2P0DJD1 1756 aa7.94□□□□□ -1.14
HMGB3-202ENST00000419110 COL22A1Q8NFW1 1626 aaPredicted RBP7.93□□□□□ -1.14
HMGB3-202ENST00000419110 ATMINO43313 823 aaPredicted RBP7.93□□□□□ -1.14
HMGB3-202ENST00000419110 ESCO1Q5FWF5 840 aa7.93□□□□□ -1.14
HMGB3-202ENST00000419110 RBM33Q96EV2 1170 aaKnown RBP7.93□□□□□ -1.14
HMGB3-202ENST00000419110 NPHP3Q7Z494 1330 aa7.93□□□□□ -1.14
HMGB3-202ENST00000419110 SBNO1A3KN83 1393 aa7.93□□□□□ -1.14
HMGB3-202ENST00000419110 FLT4P35916 1363 aa7.93□□□□□ -1.14
HMGB3-202ENST00000419110 WNK3Q9BYP7 1800 aa7.92□□□□□ -1.14
HMGB3-202ENST00000419110 NUDCQ9Y266 331 aa7.92□□□□□ -1.14
HMGB3-202ENST00000419110 ARHGEF10O15013 1369 aa7.92□□□□□ -1.14
HMGB3-202ENST00000419110 PARP4Q9UKK3 1724 aaKnown RBP7.92□□□□□ -1.14
HMGB3-202ENST00000419110 POTEB2H3BUK9 544 aa7.91□□□□□ -1.14
HMGB3-202ENST00000419110 MTHFSP49914 203 aa7.91□□□□□ -1.14
HMGB3-202ENST00000419110 PNPLA6Q8IY17 1366 aa7.91□□□□□ -1.14
HMGB3-202ENST00000419110 LRRC37A3O60309 1634 aa7.91□□□□□ -1.14
HMGB3-202ENST00000419110 LMO7Q8WWI1 1683 aa7.9□□□□□ -1.14
HMGB3-202ENST00000419110 COL16A1Q07092 1604 aaPredicted RBP7.9□□□□□ -1.14
HMGB3-202ENST00000419110 MAPK8IP3Q9UPT6 1336 aa7.9□□□□□ -1.14
HMGB3-202ENST00000419110 MAP3K13O43283 966 aa7.9□□□□□ -1.14
HMGB3-202ENST00000419110 SLC39A7Q92504 469 aa7.9□□□□□ -1.14
HMGB3-202ENST00000419110 COL18A1P39060 1754 aa7.89□□□□□ -1.15
HMGB3-202ENST00000419110 PLCH1Q4KWH8 1693 aa7.89□□□□□ -1.15
HMGB3-202ENST00000419110 USP19O94966 1318 aa7.89□□□□□ -1.15
HMGB3-202ENST00000419110 DIAPH1O60610 1272 aaKnown RBP7.89□□□□□ -1.15
HMGB3-202ENST00000419110 C7P10643 843 aa7.89□□□□□ -1.15
HMGB3-202ENST00000419110 PSME1Q06323 249 aa7.89□□□□□ -1.15
HMGB3-202ENST00000419110 EMILIN1Q9Y6C2 1016 aa7.89□□□□□ -1.15
HMGB3-202ENST00000419110 U2SURPO15042 1029 aaKnown RBP7.88□□□□□ -1.15
HMGB3-202ENST00000419110 PPM1GO15355 546 aaPredicted RBP7.88□□□□□ -1.15
HMGB3-202ENST00000419110 NEFMP07197 916 aa7.88□□□□□ -1.15
HMGB3-202ENST00000419110 NUBP1P53384 320 aa7.88□□□□□ -1.15
HMGB3-202ENST00000419110 NLRP6P59044 892 aa7.88□□□□□ -1.15
HMGB3-202ENST00000419110 NGEFQ8N5V2 710 aa7.88□□□□□ -1.15
HMGB3-202ENST00000419110 ABTB2Q8N961 1025 aa7.88□□□□□ -1.15
HMGB3-202ENST00000419110 OTUD5Q96G74 571 aa7.88□□□□□ -1.15
HMGB3-202ENST00000419110 ORAI2Q96SN7 254 aa7.88□□□□□ -1.15
HMGB3-202ENST00000419110 PNNQ9H307 717 aaKnown RBP7.88□□□□□ -1.15
HMGB3-202ENST00000419110 METRNQ9UJH8 293 aa7.88□□□□□ -1.15
HMGB3-202ENST00000419110 COL14A1Q05707 1796 aaKnown RBP7.88□□□□□ -1.15
HMGB3-202ENST00000419110 PKD1L3Q7Z443 1732 aa7.88□□□□□ -1.15
HMGB3-202ENST00000419110 SOX12O15370 315 aa7.87□□□□□ -1.15
HMGB3-202ENST00000419110 U2AF1L5P0DN76 240 aaPredicted RBP7.87□□□□□ -1.15
HMGB3-202ENST00000419110 ATN1P54259 1190 aaPredicted RBP7.87□□□□□ -1.15
HMGB3-202ENST00000419110 U2AF1Q01081 240 aaKnown RBP eCLIP7.87□□□□□ -1.15
HMGB3-202ENST00000419110 RRS1Q15050 365 aaKnown RBP7.87□□□□□ -1.15
HMGB3-202ENST00000419110 KCNH5Q8NCM2 988 aa7.87□□□□□ -1.15
HMGB3-202ENST00000419110 POLKQ9UBT6 870 aa7.87□□□□□ -1.15
HMGB3-202ENST00000419110 FBXO3Q9UK99 471 aa7.87□□□□□ -1.15
HMGB3-202ENST00000419110 ADAMTS8Q9UP79 889 aa7.87□□□□□ -1.15
HMGB3-202ENST00000419110 MAP3K19Q56UN5 1328 aa7.86□□□□□ -1.15
HMGB3-202ENST00000419110 FOXO3O43524 673 aa7.86□□□□□ -1.15
HMGB3-202ENST00000419110 PDE3BQ13370 1112 aa7.86□□□□□ -1.15
HMGB3-202ENST00000419110 CCDC146Q8IYE0 955 aa7.86□□□□□ -1.15
HMGB3-202ENST00000419110 RUNDC1Q96C34 613 aa7.86□□□□□ -1.15
HMGB3-202ENST00000419110 NRAPQ86VF7 1730 aa7.86□□□□□ -1.15
HMGB3-202ENST00000419110 NWD2Q9ULI1 1742 aa7.86□□□□□ -1.15
HMGB3-202ENST00000419110 NEFLP07196 543 aa7.85□□□□□ -1.15
HMGB3-202ENST00000419110 AMPHP49418 695 aa7.85□□□□□ -1.15
HMGB3-202ENST00000419110 XPCQ01831 940 aaPredicted RBP7.85□□□□□ -1.15
HMGB3-202ENST00000419110 NUTM2GQ5VZR2 741 aa7.85□□□□□ -1.15
HMGB3-202ENST00000419110 LMOD2Q6P5Q4 547 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms