RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 TAF7LQ5H9L4 462 aa10.67□□□□□ -0.7
SYNE1-211ENST00000413186 DZIP1LQ8IYY4 767 aaKnown RBP10.67□□□□□ -0.7
SYNE1-211ENST00000413186 VWDEQ8N2E2 1590 aa10.67□□□□□ -0.7
SYNE1-211ENST00000413186 BECN1Q14457 450 aa10.67□□□□□ -0.7
SYNE1-211ENST00000413186 TWISTNBQ3B726 338 aaPredicted RBP10.67□□□□□ -0.7
SYNE1-211ENST00000413186 DEPDC5O75140 1603 aa10.66□□□□□ -0.7
SYNE1-211ENST00000413186 ALKQ9UM73 1620 aa10.66□□□□□ -0.7
SYNE1-211ENST00000413186 RGS3P49796 1198 aa10.66□□□□□ -0.7
SYNE1-211ENST00000413186 HSP90AB2PQ58FF8 381 aa10.66□□□□□ -0.7
SYNE1-211ENST00000413186 SPATA31D1Q6ZQQ2 1576 aa10.66□□□□□ -0.7
SYNE1-211ENST00000413186 EXOSC9Q06265 439 aaKnown RBP10.66□□□□□ -0.7
SYNE1-211ENST00000413186 CHRNA2Q15822 529 aa10.66□□□□□ -0.7
SYNE1-211ENST00000413186 EXOC5O00471 708 aa10.66□□□□□ -0.7
SYNE1-211ENST00000413186 WWC1Q8IX03 1113 aa10.66□□□□□ -0.7
SYNE1-211ENST00000413186 LAMC1P11047 1609 aa10.66□□□□□ -0.7
SYNE1-211ENST00000413186 IP6K1Q92551 441 aa10.66□□□□□ -0.7
SYNE1-211ENST00000413186 ATP7BP35670 1465 aa10.65□□□□□ -0.7
SYNE1-211ENST00000413186 C9orf78Q9NZ63 289 aaPredicted RBP10.65□□□□□ -0.7
SYNE1-211ENST00000413186 CHMP3Q9Y3E7 222 aa10.65□□□□□ -0.7
SYNE1-211ENST00000413186 ZRANB1Q9UGI0 708 aa10.65□□□□□ -0.7
SYNE1-211ENST00000413186 PREX1Q8TCU6 1659 aa10.65□□□□□ -0.71
SYNE1-211ENST00000413186 ANKARQ7Z5J8 1434 aa10.65□□□□□ -0.71
SYNE1-211ENST00000413186 RIMS1Q86UR5 1692 aaKnown RBP10.64□□□□□ -0.71
SYNE1-211ENST00000413186 IFNL2Q8IZJ0 200 aa10.64□□□□□ -0.71
SYNE1-211ENST00000413186 NECTIN2Q92692 538 aa10.64□□□□□ -0.71
SYNE1-211ENST00000413186 SETBP1Q9Y6X0 1596 aa10.64□□□□□ -0.71
SYNE1-211ENST00000413186 HDGFL1Q5TGJ6 251 aa10.64□□□□□ -0.71
SYNE1-211ENST00000413186 BTBD11A6QL63 1104 aa10.64□□□□□ -0.71
SYNE1-211ENST00000413186 TCERG1O14776 1098 aaKnown RBP10.64□□□□□ -0.71
SYNE1-211ENST00000413186 USHBP1Q8N6Y0 703 aa10.64□□□□□ -0.71
SYNE1-211ENST00000413186 CDCA7LQ96GN5 454 aa10.64□□□□□ -0.71
SYNE1-211ENST00000413186 RBM42Q9BTD8 480 aaKnown RBP10.64□□□□□ -0.71
SYNE1-211ENST00000413186 IFT57Q9NWB7 429 aa10.64□□□□□ -0.71
SYNE1-211ENST00000413186 MAP3K19Q56UN5 1328 aa10.64□□□□□ -0.71
SYNE1-211ENST00000413186 SBNO1A3KN83 1393 aa10.64□□□□□ -0.71
SYNE1-211ENST00000413186 TAF7Q15545 349 aaPredicted RBP10.64□□□□□ -0.71
SYNE1-211ENST00000413186 NCLP19338 710 aaKnown RBP10.63□□□□□ -0.71
SYNE1-211ENST00000413186 SF3B2Q13435 895 aaKnown RBP10.63□□□□□ -0.71
SYNE1-211ENST00000413186 EIF4A2Q14240 407 aaKnown RBP10.63□□□□□ -0.71
SYNE1-211ENST00000413186 RIC3Q7Z5B4 369 aa10.63□□□□□ -0.71
SYNE1-211ENST00000413186 ZNF335Q9H4Z2 1342 aaPredicted RBP10.63□□□□□ -0.71
SYNE1-211ENST00000413186 PIK3C2BO00750 1634 aa10.63□□□□□ -0.71
SYNE1-211ENST00000413186 MADDQ8WXG6 1647 aa10.63□□□□□ -0.71
SYNE1-211ENST00000413186 TRPM1Q7Z4N2 1603 aa10.63□□□□□ -0.71
SYNE1-211ENST00000413186 HSP90B1P14625 803 aaKnown RBP10.63□□□□□ -0.71
SYNE1-211ENST00000413186 GPATCH3Q96I76 525 aa10.63□□□□□ -0.71
SYNE1-211ENST00000413186 CABLES1Q8TDN4 633 aa10.62□□□□□ -0.71
SYNE1-211ENST00000413186 TMOD3Q9NYL9 352 aa10.62□□□□□ -0.71
SYNE1-211ENST00000413186 MSH5O43196 834 aa10.62□□□□□ -0.71
SYNE1-211ENST00000413186 HOXC9P31274 260 aa10.62□□□□□ -0.71
SYNE1-211ENST00000413186 TSR2Q969E8 191 aaKnown RBP10.62□□□□□ -0.71
SYNE1-211ENST00000413186 COG6Q9Y2V7 657 aa10.62□□□□□ -0.71
SYNE1-211ENST00000413186 ADGRL3Q9HAR2 1447 aa10.62□□□□□ -0.71
SYNE1-211ENST00000413186 NEXMIFQ5QGS0 1516 aa10.62□□□□□ -0.71
SYNE1-211ENST00000413186 HTATSF1O43719 755 aaKnown RBP10.62□□□□□ -0.71
SYNE1-211ENST00000413186 SLFN5Q08AF3 891 aa10.62□□□□□ -0.71
SYNE1-211ENST00000413186 CEP170BQ9Y4F5 1589 aaPredicted RBP10.62□□□□□ -0.71
SYNE1-211ENST00000413186 FER1L4A9Z1Z3 1794 aa10.61□□□□□ -0.71
SYNE1-211ENST00000413186 FBLN1P23142 703 aa10.61□□□□□ -0.71
SYNE1-211ENST00000413186 IL16Q14005 1332 aa10.61□□□□□ -0.71
SYNE1-211ENST00000413186 NEURL4Q96JN8 1562 aa10.61□□□□□ -0.71
SYNE1-211ENST00000413186 PLIN1O60240 522 aa10.61□□□□□ -0.71
SYNE1-211ENST00000413186 GORABQ5T7V8 394 aa10.61□□□□□ -0.71
SYNE1-211ENST00000413186 ANP32EQ9BTT0 268 aa10.61□□□□□ -0.71
SYNE1-211ENST00000413186 APBB1O00213 710 aa10.6□□□□□ -0.71
SYNE1-211ENST00000413186 KIF6Q6ZMV9 814 aa10.6□□□□□ -0.71
SYNE1-211ENST00000413186 CDCA7Q9BWT1 371 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-211ENST00000413186 PDE3AQ14432 1141 aa10.6□□□□□ -0.71
SYNE1-211ENST00000413186 MCM10Q7L590 875 aa10.6□□□□□ -0.71
SYNE1-211ENST00000413186 PTCH1Q13635 1447 aa10.6□□□□□ -0.71
SYNE1-211ENST00000413186 ZCRB1Q8TBF4 217 aaKnown RBP10.6□□□□□ -0.71
SYNE1-211ENST00000413186 GNAI3P08754 354 aa10.59□□□□□ -0.71
SYNE1-211ENST00000413186 AIMP1Q12904 312 aaKnown RBP10.59□□□□□ -0.71
SYNE1-211ENST00000413186 CRBNQ96SW2 442 aa10.59□□□□□ -0.71
SYNE1-211ENST00000413186 STARD3NLO95772 234 aa10.59□□□□□ -0.71
SYNE1-211ENST00000413186 C8orf37Q96NL8 207 aa10.59□□□□□ -0.71
SYNE1-211ENST00000413186 SLC4A2P04920 1241 aa10.59□□□□□ -0.71
SYNE1-211ENST00000413186 IL2RBP14784 551 aa10.59□□□□□ -0.71
SYNE1-211ENST00000413186 CCDC27Q2M243 656 aa10.59□□□□□ -0.71
SYNE1-211ENST00000413186 USP6P35125 1406 aa10.59□□□□□ -0.71
SYNE1-211ENST00000413186 DLC1Q96QB1 1528 aa10.59□□□□□ -0.71
SYNE1-211ENST00000413186 PRR36Q9H6K5 1346 aa10.59□□□□□ -0.71
SYNE1-211ENST00000413186 CENPQQ7L2Z9 268 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-211ENST00000413186 MPRIPQ6WCQ1 1025 aa10.58□□□□□ -0.72
SYNE1-211ENST00000413186 AKAP4Q5JQC9 854 aa10.58□□□□□ -0.72
SYNE1-211ENST00000413186 EYA1Q99502 592 aa10.58□□□□□ -0.72
SYNE1-211ENST00000413186 APPP05067 770 aa10.58□□□□□ -0.72
SYNE1-211ENST00000413186 HSP90AB4PQ58FF6 505 aa10.58□□□□□ -0.72
SYNE1-211ENST00000413186 RBM19Q9Y4C8 960 aaKnown RBP10.58□□□□□ -0.72
SYNE1-211ENST00000413186 TEX13AQ9BXU3 409 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-211ENST00000413186 MROH1Q8NDA8 1641 aa10.57□□□□□ -0.72
SYNE1-211ENST00000413186 CCT4P50991 539 aaKnown RBP10.57□□□□□ -0.72
SYNE1-211ENST00000413186 AATKQ6ZMQ8 1374 aa10.57□□□□□ -0.72
SYNE1-211ENST00000413186 EXOC6Q8TAG9 804 aa10.57□□□□□ -0.72
SYNE1-211ENST00000413186 THUMPD2Q9BTF0 503 aaKnown RBP10.57□□□□□ -0.72
SYNE1-211ENST00000413186 ADAMTS13Q76LX8 1427 aa10.57□□□□□ -0.72
SYNE1-211ENST00000413186 UBTFL1P0CB47 393 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-211ENST00000413186 DCTN1Q14203 1278 aa10.57□□□□□ -0.72
SYNE1-211ENST00000413186 DUSP27Q5VZP5 1158 aa10.57□□□□□ -0.72
SYNE1-211ENST00000413186 FMNL2Q96PY5 1086 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms