RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RTF1Q92541 710 aaKnown RBP16.79■□□□□ 0.28
VPS54-203ENST00000409558 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.79■□□□□ 0.28
VPS54-203ENST00000409558 SLC4A2P04920 1241 aa16.79■□□□□ 0.28
VPS54-203ENST00000409558 TBC1D32Q96NH3 1257 aa16.79■□□□□ 0.28
VPS54-203ENST00000409558 IQSEC2Q5JU85 1478 aa16.79■□□□□ 0.28
VPS54-203ENST00000409558 MRPL50Q8N5N7 158 aaKnown RBP16.78■□□□□ 0.28
VPS54-203ENST00000409558 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.78■□□□□ 0.28
VPS54-203ENST00000409558 OTUD7AQ8TE49 926 aaPredicted RBP16.78■□□□□ 0.28
VPS54-203ENST00000409558 CD163L1Q9NR16 1453 aa16.78■□□□□ 0.28
VPS54-203ENST00000409558 USP35Q9P2H5 1018 aa16.78■□□□□ 0.28
VPS54-203ENST00000409558 EID1Q9Y6B2 187 aa16.78■□□□□ 0.28
VPS54-203ENST00000409558 ALKQ9UM73 1620 aa16.77■□□□□ 0.28
VPS54-203ENST00000409558 HSP90AB1P08238 724 aaKnown RBP16.77■□□□□ 0.28
VPS54-203ENST00000409558 PUS7Q96PZ0 661 aaKnown RBP16.77■□□□□ 0.27
VPS54-203ENST00000409558 SHPRHQ149N8 1683 aa16.77■□□□□ 0.27
VPS54-203ENST00000409558 NOL8Q76FK4 1167 aaKnown RBP16.77■□□□□ 0.27
VPS54-203ENST00000409558 HSCBQ8IWL3 235 aa16.77■□□□□ 0.27
VPS54-203ENST00000409558 TSPYL4Q9UJ04 414 aa16.77■□□□□ 0.27
VPS54-203ENST00000409558 IFT172Q9UG01 1749 aa16.76■□□□□ 0.27
VPS54-203ENST00000409558 ROBO2Q9HCK4 1378 aa16.76■□□□□ 0.27
VPS54-203ENST00000409558 NINLQ9Y2I6 1382 aa16.76■□□□□ 0.27
VPS54-203ENST00000409558 TTC21BQ7Z4L5 1316 aa16.76■□□□□ 0.27
VPS54-203ENST00000409558 ARHGEF28Q8N1W1 1705 aaKnown RBP16.76■□□□□ 0.27
VPS54-203ENST00000409558 ZBTB7BO15156 539 aaPredicted RBP16.75■□□□□ 0.27
VPS54-203ENST00000409558 EIF2S2P20042 333 aaKnown RBP16.75■□□□□ 0.27
VPS54-203ENST00000409558 FOXD4L5Q5VV16 416 aaPredicted RBP16.75■□□□□ 0.27
VPS54-203ENST00000409558 FOXD4L4Q8WXT5 416 aaPredicted RBP16.75■□□□□ 0.27
VPS54-203ENST00000409558 A2ML1A8K2U0 1454 aa16.74■□□□□ 0.27
VPS54-203ENST00000409558 ZC3H13Q5T200 1668 aaKnown RBP16.74■□□□□ 0.27
VPS54-203ENST00000409558 G2E3Q7L622 706 aa16.74■□□□□ 0.27
VPS54-203ENST00000409558 CFAP44Q96MT7 982 aa16.74■□□□□ 0.27
VPS54-203ENST00000409558 SIRT2Q8IXJ6 389 aa16.74■□□□□ 0.27
VPS54-203ENST00000409558 ARHGAP31Q2M1Z3 1444 aa16.74■□□□□ 0.27
VPS54-203ENST00000409558 CALD1Q05682 793 aaKnown RBP16.74■□□□□ 0.27
VPS54-203ENST00000409558 MEIS3Q99687 375 aa16.74■□□□□ 0.27
VPS54-203ENST00000409558 ABTB2Q8N961 1025 aa16.73■□□□□ 0.27
VPS54-203ENST00000409558 IFT57Q9NWB7 429 aa16.73■□□□□ 0.27
VPS54-203ENST00000409558 CFAP74Q9C0B2 1584 aa16.72■□□□□ 0.27
VPS54-203ENST00000409558 TNRQ92752 1358 aa16.72■□□□□ 0.27
VPS54-203ENST00000409558 ARHGEF40Q8TER5 1519 aa16.72■□□□□ 0.27
VPS54-203ENST00000409558 HDAC1Q13547 482 aaPredicted RBP16.72■□□□□ 0.27
VPS54-203ENST00000409558 SMC5Q8IY18 1101 aa16.72■□□□□ 0.27
VPS54-203ENST00000409558 NUCB1Q02818 461 aa16.72■□□□□ 0.27
VPS54-203ENST00000409558 MTHFSDQ2M296 383 aaKnown RBP16.72■□□□□ 0.27
VPS54-203ENST00000409558 CT47B1P0C2W7 299 aaPredicted RBP16.71■□□□□ 0.27
VPS54-203ENST00000409558 ANXA1P04083 346 aa16.71■□□□□ 0.26
VPS54-203ENST00000409558 LMOD3Q0VAK6 560 aa16.71■□□□□ 0.26
VPS54-203ENST00000409558 EXOC6BQ9Y2D4 811 aa16.71■□□□□ 0.26
VPS54-203ENST00000409558 MAP3K19Q56UN5 1328 aa16.71■□□□□ 0.26
VPS54-203ENST00000409558 ALDH1L2Q3SY69 923 aa16.7■□□□□ 0.26
VPS54-203ENST00000409558 FKBP5Q13451 457 aaPredicted RBP16.7■□□□□ 0.26
VPS54-203ENST00000409558 LRRC7Q96NW7 1537 aa16.7■□□□□ 0.26
VPS54-203ENST00000409558 ZNF692Q9BU19 519 aaPredicted RBP16.69■□□□□ 0.26
VPS54-203ENST00000409558 IL16Q14005 1332 aa16.69■□□□□ 0.26
VPS54-203ENST00000409558 TMEM131LA2VDJ0 1609 aa16.69■□□□□ 0.26
VPS54-203ENST00000409558 TBC1D9Q6ZT07 1266 aa16.69■□□□□ 0.26
VPS54-203ENST00000409558 MYO3AQ8NEV4 1616 aa16.69■□□□□ 0.26
VPS54-203ENST00000409558 CPS1P31327 1500 aa16.69■□□□□ 0.26
VPS54-203ENST00000409558 FOXD4L6Q3SYB3 417 aaPredicted RBP16.69■□□□□ 0.26
VPS54-203ENST00000409558 FOXD4L3Q6VB84 417 aaPredicted RBP16.69■□□□□ 0.26
VPS54-203ENST00000409558 API5Q9BZZ5 524 aaKnown RBP16.68■□□□□ 0.26
VPS54-203ENST00000409558 CD2BP2O95400 341 aaKnown RBP16.68■□□□□ 0.26
VPS54-203ENST00000409558 KCNA6P17658 529 aa16.68■□□□□ 0.26
VPS54-203ENST00000409558 PREX1Q8TCU6 1659 aa16.68■□□□□ 0.26
VPS54-203ENST00000409558 NLRP1Q9C000 1473 aa16.67■□□□□ 0.26
VPS54-203ENST00000409558 CLTCQ00610 1675 aaKnown RBP16.67■□□□□ 0.26
VPS54-203ENST00000409558 EYA1Q99502 592 aa16.67■□□□□ 0.26
VPS54-203ENST00000409558 NCLP19338 710 aaKnown RBP16.66■□□□□ 0.26
VPS54-203ENST00000409558 ZFYVE9O95405 1425 aa16.66■□□□□ 0.26
VPS54-203ENST00000409558 EIF5BO60841 1220 aaKnown RBP16.66■□□□□ 0.26
VPS54-203ENST00000409558 DTNBO60941 627 aa16.66■□□□□ 0.26
VPS54-203ENST00000409558 PNPLA6Q8IY17 1366 aa16.66■□□□□ 0.26
VPS54-203ENST00000409558 COL3A1P02461 1466 aaPredicted RBP16.66■□□□□ 0.26
VPS54-203ENST00000409558 MAP4K4O95819 1239 aaPredicted RBP16.66■□□□□ 0.26
VPS54-203ENST00000409558 RICTORQ6R327 1708 aa16.66■□□□□ 0.26
VPS54-203ENST00000409558 EDC4Q6P2E9 1401 aaKnown RBP16.65■□□□□ 0.26
VPS54-203ENST00000409558 FAM135BQ49AJ0 1406 aa16.65■□□□□ 0.26
VPS54-203ENST00000409558 ESCO1Q5FWF5 840 aa16.64■□□□□ 0.26
VPS54-203ENST00000409558 RILPL2Q969X0 211 aa16.64■□□□□ 0.26
VPS54-203ENST00000409558 STK31Q9BXU1 1019 aa16.64■□□□□ 0.26
VPS54-203ENST00000409558 AAMPQ13685 434 aa16.64■□□□□ 0.25
VPS54-203ENST00000409558 TMEM2Q9UHN6 1383 aa16.64■□□□□ 0.25
VPS54-203ENST00000409558 TRIM6-TRIM34B2RNG4 842 aa16.64■□□□□ 0.25
VPS54-203ENST00000409558 IL1RAPL2Q9NP60 686 aa16.63■□□□□ 0.25
VPS54-203ENST00000409558 NEURL4Q96JN8 1562 aa16.63■□□□□ 0.25
VPS54-203ENST00000409558 LRRC59Q96AG4 307 aaKnown RBP16.62■□□□□ 0.25
VPS54-203ENST00000409558 GSPT1P15170 499 aaKnown RBP16.61■□□□□ 0.25
VPS54-203ENST00000409558 CHAMP1Q96JM3 812 aa16.61■□□□□ 0.25
VPS54-203ENST00000409558 ZNF853P0CG23 659 aa16.61■□□□□ 0.25
VPS54-203ENST00000409558 GCC1Q96CN9 775 aa16.61■□□□□ 0.25
VPS54-203ENST00000409558 MSH6P52701 1360 aa16.6■□□□□ 0.25
VPS54-203ENST00000409558 MAP2P11137 1827 aaKnown RBP16.6■□□□□ 0.25
VPS54-203ENST00000409558 SETD1BQ9UPS6 1966 aaKnown RBP16.6■□□□□ 0.25
VPS54-203ENST00000409558 PSME1Q06323 249 aa16.6■□□□□ 0.25
VPS54-203ENST00000409558 ANO8Q9HCE9 1232 aaPredicted RBP16.6■□□□□ 0.25
VPS54-203ENST00000409558 PANK2Q9BZ23 570 aa16.6■□□□□ 0.25
VPS54-203ENST00000409558 CHMP5Q9NZZ3 219 aa16.6■□□□□ 0.25
VPS54-203ENST00000409558 MCM4P33991 863 aa16.59■□□□□ 0.25
VPS54-203ENST00000409558 ANTXR1Q9H6X2 564 aa16.59■□□□□ 0.25
VPS54-203ENST00000409558 RIMBP3CA6NJZ7 1639 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms