RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 MSH6P52701 1360 aa33.6■■■□□ 2.97
CPNE1-205ENST00000401607 ERICH6BQ5W0A0 696 aa33.6■■■□□ 2.97
CPNE1-205ENST00000401607 CADPS2Q86UW7 1296 aa33.59■■■□□ 2.97
CPNE1-205ENST00000401607 RRP1P56182 461 aaKnown RBP33.58■■■□□ 2.97
CPNE1-205ENST00000401607 XPCQ01831 940 aaPredicted RBP33.58■■■□□ 2.97
CPNE1-205ENST00000401607 TRIM35Q9UPQ4 493 aa33.57■■■□□ 2.96
CPNE1-205ENST00000401607 NFAT5O94916 1531 aa33.57■■■□□ 2.96
CPNE1-205ENST00000401607 KIF24Q5T7B8 1368 aa33.56■■■□□ 2.96
CPNE1-205ENST00000401607 KRT28Q7Z3Y7 464 aa33.55■■■□□ 2.96
CPNE1-205ENST00000401607 PHACTR3Q96KR7 559 aa33.55■■■□□ 2.96
CPNE1-205ENST00000401607 AMPHP49418 695 aa33.54■■■□□ 2.96
CPNE1-205ENST00000401607 RIPK4P57078 832 aa33.52■■■□□ 2.96
CPNE1-205ENST00000401607 NEFMP07197 916 aa33.51■■■□□ 2.95
CPNE1-205ENST00000401607 LTN1O94822 1766 aa33.51■■■□□ 2.95
CPNE1-205ENST00000401607 SLIT3O75094 1523 aa33.5■■■□□ 2.95
CPNE1-205ENST00000401607 HOXC9P31274 260 aa33.49■■■□□ 2.95
CPNE1-205ENST00000401607 AEBP1Q8IUX7 1158 aa33.49■■■□□ 2.95
CPNE1-205ENST00000401607 ALS2Q96Q42 1657 aa33.49■■■□□ 2.95
CPNE1-205ENST00000401607 NFE2L2Q16236 605 aa33.49■■■□□ 2.95
CPNE1-205ENST00000401607 ARHGEF10O15013 1369 aa33.48■■■□□ 2.95
CPNE1-205ENST00000401607 RTL1A6NKG5 1358 aa33.48■■■□□ 2.95
CPNE1-205ENST00000401607 SULT6B1Q6IMI4 303 aa33.47■■■□□ 2.95
CPNE1-205ENST00000401607 KCNH5Q8NCM2 988 aa33.46■■■□□ 2.95
CPNE1-205ENST00000401607 USP19O94966 1318 aa33.45■■■□□ 2.94
CPNE1-205ENST00000401607 PHRF1Q9P1Y6 1649 aaKnown RBP33.44■■■□□ 2.94
CPNE1-205ENST00000401607 DDX17Q92841 729 aaKnown RBP33.43■■■□□ 2.94
CPNE1-205ENST00000401607 PPP4R2Q9NY27 417 aa33.42■■■□□ 2.94
CPNE1-205ENST00000401607 IL16Q14005 1332 aa33.42■■■□□ 2.94
CPNE1-205ENST00000401607 MYH16Q9H6N6 1097 aa33.42■■■□□ 2.94
CPNE1-205ENST00000401607 IGSF1Q8N6C5 1336 aa33.41■■■□□ 2.94
CPNE1-205ENST00000401607 NPHP3Q7Z494 1330 aa33.41■■■□□ 2.94
CPNE1-205ENST00000401607 KDRP35968 1356 aa33.4■■■□□ 2.94
CPNE1-205ENST00000401607 DLG5Q8TDM6 1919 aa33.4■■■□□ 2.94
CPNE1-205ENST00000401607 LMOD2Q6P5Q4 547 aa33.4■■■□□ 2.94
CPNE1-205ENST00000401607 EYA1Q99502 592 aa33.39■■■□□ 2.94
CPNE1-205ENST00000401607 PXDNQ92626 1479 aa33.39■■■□□ 2.94
CPNE1-205ENST00000401607 GCP02774 474 aa33.39■■■□□ 2.94
CPNE1-205ENST00000401607 IP6K1Q92551 441 aa33.38■■■□□ 2.93
CPNE1-205ENST00000401607 PLIN1O60240 522 aa33.37■■■□□ 2.93
CPNE1-205ENST00000401607 MED1Q15648 1581 aaPredicted RBP33.37■■■□□ 2.93
CPNE1-205ENST00000401607 BRINP3Q76B58 766 aa33.37■■■□□ 2.93
CPNE1-205ENST00000401607 FANCIQ9NVI1 1328 aa33.36■■■□□ 2.93
CPNE1-205ENST00000401607 ARHGEF25Q86VW2 580 aa33.34■■■□□ 2.93
CPNE1-205ENST00000401607 TNS3Q68CZ2 1445 aa33.33■■■□□ 2.93
CPNE1-205ENST00000401607 TSR2Q969E8 191 aaKnown RBP33.32■■■□□ 2.92
CPNE1-205ENST00000401607 SLAIN2Q9P270 581 aa33.32■■■□□ 2.92
CPNE1-205ENST00000401607 PLEKHG5O94827 1062 aa33.3■■■□□ 2.92
CPNE1-205ENST00000401607 LMOD3Q0VAK6 560 aa33.3■■■□□ 2.92
CPNE1-205ENST00000401607 LTV1Q96GA3 475 aaPredicted RBP33.3■■■□□ 2.92
CPNE1-205ENST00000401607 BCAR3O75815 825 aa33.29■■■□□ 2.92
CPNE1-205ENST00000401607 THUMPD2Q9BTF0 503 aaKnown RBP33.29■■■□□ 2.92
CPNE1-205ENST00000401607 SPATA31A3Q5VYP0 1347 aa33.27■■■□□ 2.92
CPNE1-205ENST00000401607 ZBTB7CA1YPR0 619 aa33.27■■■□□ 2.92
CPNE1-205ENST00000401607 EXOC6Q8TAG9 804 aa33.26■■■□□ 2.92
CPNE1-205ENST00000401607 CRYBG1Q9Y4K1 1723 aa33.25■■■□□ 2.91
CPNE1-205ENST00000401607 CALD1Q05682 793 aaKnown RBP33.25■■■□□ 2.91
CPNE1-205ENST00000401607 GOLGA6L2Q8N9W4 650 aaPredicted RBP33.25■■■□□ 2.91
CPNE1-205ENST00000401607 FAM83GA6ND36 823 aa33.24■■■□□ 2.91
CPNE1-205ENST00000401607 RARSP54136 660 aaKnown RBP33.24■■■□□ 2.91
CPNE1-205ENST00000401607 C20orf194Q5TEA3 1177 aa33.24■■■□□ 2.91
CPNE1-205ENST00000401607 B4GALNT3Q6L9W6 998 aa33.24■■■□□ 2.91
CPNE1-205ENST00000401607 EXOSC9Q06265 439 aaKnown RBP33.24■■■□□ 2.91
CPNE1-205ENST00000401607 CT47B1P0C2W7 299 aaPredicted RBP33.21■■■□□ 2.91
CPNE1-205ENST00000401607 MTHFSDQ2M296 383 aaKnown RBP33.21■■■□□ 2.91
CPNE1-205ENST00000401607 ZNF853P0CG23 659 aa33.21■■■□□ 2.91
CPNE1-205ENST00000401607 IFT57Q9NWB7 429 aa33.21■■■□□ 2.91
CPNE1-205ENST00000401607 RGPD2P0DJD1 1756 aa33.2■■■□□ 2.91
CPNE1-205ENST00000401607 DCTN1Q14203 1278 aa33.2■■■□□ 2.91
CPNE1-205ENST00000401607 SOS2Q07890 1332 aaPredicted RBP33.2■■■□□ 2.91
CPNE1-205ENST00000401607 CRBNQ96SW2 442 aa33.19■■■□□ 2.9
CPNE1-205ENST00000401607 NBPF6Q5VWK0 638 aa33.19■■■□□ 2.9
CPNE1-205ENST00000401607 NBPF4Q96M43 638 aa33.19■■■□□ 2.9
CPNE1-205ENST00000401607 GNAI1P63096 354 aa33.18■■■□□ 2.9
CPNE1-205ENST00000401607 USHBP1Q8N6Y0 703 aa33.18■■■□□ 2.9
CPNE1-205ENST00000401607 LAS1LQ9Y4W2 734 aaKnown RBP33.17■■■□□ 2.9
CPNE1-205ENST00000401607 ZC3H6P61129 1189 aaKnown RBP33.16■■■□□ 2.9
CPNE1-205ENST00000401607 AXIN2Q9Y2T1 843 aa33.16■■■□□ 2.9
CPNE1-205ENST00000401607 NHSL1Q5SYE7 1610 aa33.16■■■□□ 2.9
CPNE1-205ENST00000401607 RGPD5Q99666 1765 aa33.15■■■□□ 2.9
CPNE1-205ENST00000401607 CAMTA1Q9Y6Y1 1673 aa33.15■■■□□ 2.9
CPNE1-205ENST00000401607 NCAPD2Q15021 1401 aa33.15■■■□□ 2.9
CPNE1-205ENST00000401607 GAS2L2Q8NHY3 880 aa33.15■■■□□ 2.9
CPNE1-205ENST00000401607 CABLES1Q8TDN4 633 aa33.15■■■□□ 2.9
CPNE1-205ENST00000401607 CFAP44Q96MT7 982 aa33.15■■■□□ 2.9
CPNE1-205ENST00000401607 LTBP4Q8N2S1 1624 aa33.15■■■□□ 2.9
CPNE1-205ENST00000401607 ANKRD24Q8TF21 1146 aa33.14■■■□□ 2.9
CPNE1-205ENST00000401607 LRRC59Q96AG4 307 aaKnown RBP33.14■■■□□ 2.9
CPNE1-205ENST00000401607 COL18A1P39060 1754 aa33.14■■■□□ 2.89
CPNE1-205ENST00000401607 MBIPQ9NS73 344 aa33.13■■■□□ 2.89
CPNE1-205ENST00000401607 MCM10Q7L590 875 aa33.12■■■□□ 2.89
CPNE1-205ENST00000401607 PELP1Q8IZL8 1130 aaKnown RBP33.11■■■□□ 2.89
CPNE1-205ENST00000401607 CCDC136Q96JN2 1154 aa33.11■■■□□ 2.89
CPNE1-205ENST00000401607 BCL2L13Q9BXK5 485 aa33.11■■■□□ 2.89
CPNE1-205ENST00000401607 CRB1P82279 1406 aa33.09■■■□□ 2.89
CPNE1-205ENST00000401607 ABCC6O95255 1503 aa33.09■■■□□ 2.89
CPNE1-205ENST00000401607 LMO7Q8WWI1 1683 aa33.07■■■□□ 2.89
CPNE1-205ENST00000401607 ERBB3P21860 1342 aa33.07■■■□□ 2.89
CPNE1-205ENST00000401607 CPDO75976 1380 aa33.06■■■□□ 2.88
CPNE1-205ENST00000401607 LRRC37A3O60309 1634 aa33.06■■■□□ 2.88
CPNE1-205ENST00000401607 PDE3AQ14432 1141 aa33.06■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms