RNA–Protein interactions for RNA: ENST00000397611.7

PTPRD-205, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 5 BASIC

Gene PTPRD, Length 8,242 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-205ENST00000397611 TERF1P54274 439 aa6.73□□□□□ -1.33
PTPRD-205ENST00000397611 GGT6Q6P531 493 aa6.73□□□□□ -1.33
PTPRD-205ENST00000397611 EXOSC9Q06265 439 aaKnown RBP6.72□□□□□ -1.33
PTPRD-205ENST00000397611 RABEP1Q15276 862 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 TULP4Q9NRJ4 1543 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 PDIA4P13667 645 aaKnown RBP6.72□□□□□ -1.33
PTPRD-205ENST00000397611 DDIT3P35638 169 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 ABCC4O15439 1325 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 EDC4Q6P2E9 1401 aaKnown RBP6.72□□□□□ -1.33
PTPRD-205ENST00000397611 CDK12Q9NYV4 1490 aaPredicted RBP6.72□□□□□ -1.33
PTPRD-205ENST00000397611 NUCB1Q02818 461 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 ZMYND15Q9H091 742 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 TPM2P07951 284 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 FOXD4L5Q5VV16 416 aaPredicted RBP6.72□□□□□ -1.33
PTPRD-205ENST00000397611 FOXD4L4Q8WXT5 416 aaPredicted RBP6.72□□□□□ -1.33
PTPRD-205ENST00000397611 BABAM1Q9NWV8 329 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 TRIM35Q9UPQ4 493 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 DDX49Q9Y6V7 483 aaKnown RBP6.72□□□□□ -1.33
PTPRD-205ENST00000397611 IFT172Q9UG01 1749 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 MCM2P49736 904 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 NUCB2P80303 420 aa6.72□□□□□ -1.33
PTPRD-205ENST00000397611 CCDC61Q9Y6R9 512 aa6.71□□□□□ -1.33
PTPRD-205ENST00000397611 ZC3H13Q5T200 1668 aaKnown RBP6.71□□□□□ -1.34
PTPRD-205ENST00000397611 ITPRIPQ8IWB1 547 aa6.71□□□□□ -1.34
PTPRD-205ENST00000397611 SENP3Q9H4L4 574 aaPredicted RBP6.71□□□□□ -1.34
PTPRD-205ENST00000397611 POGKQ9P215 609 aa6.71□□□□□ -1.34
PTPRD-205ENST00000397611 RRP9O43818 475 aaKnown RBP6.71□□□□□ -1.34
PTPRD-205ENST00000397611 PTPRMP28827 1452 aa6.71□□□□□ -1.34
PTPRD-205ENST00000397611 KIF1BO60333 1816 aa6.7□□□□□ -1.34
PTPRD-205ENST00000397611 RIPK4P57078 832 aa6.7□□□□□ -1.34
PTPRD-205ENST00000397611 SRPK2P78362 688 aaKnown RBP6.7□□□□□ -1.34
PTPRD-205ENST00000397611 INTS3Q68E01 1043 aaKnown RBP6.7□□□□□ -1.34
PTPRD-205ENST00000397611 DCTPP1Q9H773 170 aa6.7□□□□□ -1.34
PTPRD-205ENST00000397611 HMMRO75330 724 aa6.7□□□□□ -1.34
PTPRD-205ENST00000397611 VAMP4O75379 141 aa6.7□□□□□ -1.34
PTPRD-205ENST00000397611 CWC22Q9HCG8 908 aaKnown RBP6.7□□□□□ -1.34
PTPRD-205ENST00000397611 GOLGA6L4A6NEF3 574 aa6.7□□□□□ -1.34
PTPRD-205ENST00000397611 CDC45O75419 566 aa6.7□□□□□ -1.34
PTPRD-205ENST00000397611 IL17RAQ96F46 866 aa6.7□□□□□ -1.34
PTPRD-205ENST00000397611 APBB1O00213 710 aa6.7□□□□□ -1.34
PTPRD-205ENST00000397611 REC8O95072 547 aa6.7□□□□□ -1.34
PTPRD-205ENST00000397611 STAG3Q9UJ98 1225 aa6.69□□□□□ -1.34
PTPRD-205ENST00000397611 KLHL40Q2TBA0 621 aa6.69□□□□□ -1.34
PTPRD-205ENST00000397611 CHD1LQ86WJ1 897 aa6.69□□□□□ -1.34
PTPRD-205ENST00000397611 GLI2P10070 1586 aa6.69□□□□□ -1.34
PTPRD-205ENST00000397611 NOL8Q76FK4 1167 aaKnown RBP6.69□□□□□ -1.34
PTPRD-205ENST00000397611 OSBPL3Q9H4L5 887 aa6.69□□□□□ -1.34
PTPRD-205ENST00000397611 PLEKHG3A1L390 1219 aa6.69□□□□□ -1.34
PTPRD-205ENST00000397611 SYAP1Q96A49 352 aaPredicted RBP6.69□□□□□ -1.34
PTPRD-205ENST00000397611 POLKQ9UBT6 870 aa6.69□□□□□ -1.34
PTPRD-205ENST00000397611 HDAC5Q9UQL6 1122 aa6.69□□□□□ -1.34
PTPRD-205ENST00000397611 ZBTB7BO15156 539 aaPredicted RBP6.68□□□□□ -1.34
PTPRD-205ENST00000397611 TAOK2Q9UL54 1235 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 TTC21BQ7Z4L5 1316 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 DIP2CQ9Y2E4 1556 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 TMEM132EQ6IEE7 984 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 RIMS2Q9UQ26 1411 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 TRAK2O60296 914 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 MCM5P33992 734 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 ANAPC15P60006 121 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 RAB3GAP1Q15042 981 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 ANKRD44Q8N8A2 993 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 PTPRCP08575 1304 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 U2SURPO15042 1029 aaKnown RBP6.68□□□□□ -1.34
PTPRD-205ENST00000397611 CSPP1Q1MSJ5 1256 aa6.68□□□□□ -1.34
PTPRD-205ENST00000397611 MBD3O95983 291 aa6.67□□□□□ -1.34
PTPRD-205ENST00000397611 NRDCO43847 1150 aa6.67□□□□□ -1.34
PTPRD-205ENST00000397611 CD163L1Q9NR16 1453 aa6.67□□□□□ -1.34
PTPRD-205ENST00000397611 TMEM57Q8N5G2 664 aa6.67□□□□□ -1.34
PTPRD-205ENST00000397611 PRKAR2BP31323 418 aa6.67□□□□□ -1.34
PTPRD-205ENST00000397611 HTATSF1O43719 755 aaKnown RBP6.67□□□□□ -1.34
PTPRD-205ENST00000397611 GGNBP2Q9H3C7 697 aa6.67□□□□□ -1.34
PTPRD-205ENST00000397611 PPLO60437 1756 aa6.67□□□□□ -1.34
PTPRD-205ENST00000397611 CHL1O00533 1208 aa6.67□□□□□ -1.34
PTPRD-205ENST00000397611 RTL1A6NKG5 1358 aa6.67□□□□□ -1.34
PTPRD-205ENST00000397611 SSH2Q76I76 1423 aa6.67□□□□□ -1.34
PTPRD-205ENST00000397611 SEC24BO95487 1268 aa6.66□□□□□ -1.34
PTPRD-205ENST00000397611 XRCC6P12956 609 aaKnown RBP eCLIP6.66□□□□□ -1.34
PTPRD-205ENST00000397611 MCCP23508 829 aa6.66□□□□□ -1.34
PTPRD-205ENST00000397611 RRP7AQ9Y3A4 280 aaKnown RBP6.66□□□□□ -1.34
PTPRD-205ENST00000397611 SHPRHQ149N8 1683 aa6.66□□□□□ -1.34
PTPRD-205ENST00000397611 PRDM10Q9NQV6 1147 aa6.66□□□□□ -1.34
PTPRD-205ENST00000397611 KIAA1211Q6ZU35 1233 aa6.66□□□□□ -1.34
PTPRD-205ENST00000397611 PRAM1Q96QH2 718 aa6.66□□□□□ -1.34
PTPRD-205ENST00000397611 MAP7D2Q96T17 732 aa6.66□□□□□ -1.34
PTPRD-205ENST00000397611 K7ELQ4 463 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-205ENST00000397611 WASLO00401 505 aaPredicted RBP6.66□□□□□ -1.34
PTPRD-205ENST00000397611 MRPL50Q8N5N7 158 aaKnown RBP6.66□□□□□ -1.34
PTPRD-205ENST00000397611 ESPNB1AK53 854 aa6.66□□□□□ -1.34
PTPRD-205ENST00000397611 AOX1Q06278 1338 aa6.65□□□□□ -1.34
PTPRD-205ENST00000397611 IL13P35225 146 aa6.65□□□□□ -1.34
PTPRD-205ENST00000397611 NASPP49321 788 aaPredicted RBP6.65□□□□□ -1.34
PTPRD-205ENST00000397611 INTS4Q96HW7 963 aaKnown RBP6.65□□□□□ -1.34
PTPRD-205ENST00000397611 TTC21AQ8NDW8 1320 aa6.65□□□□□ -1.34
PTPRD-205ENST00000397611 ARHGEF10O15013 1369 aa6.65□□□□□ -1.34
PTPRD-205ENST00000397611 USP31Q70CQ4 1352 aa6.65□□□□□ -1.34
PTPRD-205ENST00000397611 SPATA31D1Q6ZQQ2 1576 aa6.65□□□□□ -1.34
PTPRD-205ENST00000397611 ZNF445P59923 1031 aa6.65□□□□□ -1.34
PTPRD-205ENST00000397611 TWISTNBQ3B726 338 aaPredicted RBP6.65□□□□□ -1.34
PTPRD-205ENST00000397611 CLTCQ00610 1675 aaKnown RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms