RNA–Protein interactions for RNA: ENST00000396581.5

TRIM40-207, Transcript of tripartite motif containing 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM40, Length 2,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-207ENST00000396581 ANKLE2Q86XL3 938 aa16.79■□□□□ 0.28
TRIM40-207ENST00000396581 SSH1Q8WYL5 1049 aa16.79■□□□□ 0.28
TRIM40-207ENST00000396581 SMC4Q9NTJ3 1288 aa16.79■□□□□ 0.28
TRIM40-207ENST00000396581 AMOTL2Q9Y2J4 779 aa16.79■□□□□ 0.28
TRIM40-207ENST00000396581 ANKRD26Q9UPS8 1709 aa16.78■□□□□ 0.28
TRIM40-207ENST00000396581 TSR2Q969E8 191 aaKnown RBP16.78■□□□□ 0.28
TRIM40-207ENST00000396581 ZBTB40Q9NUA8 1239 aa16.78■□□□□ 0.28
TRIM40-207ENST00000396581 SNX21Q969T3 373 aa16.77■□□□□ 0.28
TRIM40-207ENST00000396581 PIK3R4Q99570 1358 aa16.77■□□□□ 0.28
TRIM40-207ENST00000396581 MFAP1P55081 439 aaKnown RBP16.77■□□□□ 0.27
TRIM40-207ENST00000396581 HDGFL2Q7Z4V5 671 aaPredicted RBP16.77■□□□□ 0.27
TRIM40-207ENST00000396581 PTCH1Q13635 1447 aa16.76■□□□□ 0.27
TRIM40-207ENST00000396581 ISY1Q9ULR0 285 aaKnown RBP16.76■□□□□ 0.27
TRIM40-207ENST00000396581 CCDC61Q9Y6R9 512 aa16.76■□□□□ 0.27
TRIM40-207ENST00000396581 ATP7BP35670 1465 aa16.75■□□□□ 0.27
TRIM40-207ENST00000396581 KIF16BQ96L93 1317 aa16.75■□□□□ 0.27
TRIM40-207ENST00000396581 TRAK2O60296 914 aa16.75■□□□□ 0.27
TRIM40-207ENST00000396581 BRPF1P55201 1214 aaPredicted RBP16.75■□□□□ 0.27
TRIM40-207ENST00000396581 PNPLA6Q8IY17 1366 aa16.75■□□□□ 0.27
TRIM40-207ENST00000396581 DDX11L8A8MPP1 907 aa16.74■□□□□ 0.27
TRIM40-207ENST00000396581 NUCB1Q02818 461 aa16.74■□□□□ 0.27
TRIM40-207ENST00000396581 ITPRIPQ8IWB1 547 aa16.74■□□□□ 0.27
TRIM40-207ENST00000396581 UBE2Q2Q8WVN8 375 aa16.74■□□□□ 0.27
TRIM40-207ENST00000396581 NUDT16Q96DE0 195 aaKnown RBP16.74■□□□□ 0.27
TRIM40-207ENST00000396581 NOB1Q9ULX3 412 aaKnown RBP16.74■□□□□ 0.27
TRIM40-207ENST00000396581 CDC42BPGQ6DT37 1551 aa16.74■□□□□ 0.27
TRIM40-207ENST00000396581 ALDH1L2Q3SY69 923 aa16.74■□□□□ 0.27
TRIM40-207ENST00000396581 HSCBQ8IWL3 235 aa16.74■□□□□ 0.27
TRIM40-207ENST00000396581 TMEM57Q8N5G2 664 aa16.74■□□□□ 0.27
TRIM40-207ENST00000396581 FYB1O15117 783 aa16.73■□□□□ 0.27
TRIM40-207ENST00000396581 CPSF1Q10570 1443 aaKnown RBP16.73■□□□□ 0.27
TRIM40-207ENST00000396581 MRE11P49959 708 aa16.73■□□□□ 0.27
TRIM40-207ENST00000396581 CIZ1Q9ULV3 898 aaPredicted RBP16.73■□□□□ 0.27
TRIM40-207ENST00000396581 PPIP5K1Q6PFW1 1433 aa16.72■□□□□ 0.27
TRIM40-207ENST00000396581 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.72■□□□□ 0.27
TRIM40-207ENST00000396581 IPO8O15397 1037 aaKnown RBP16.72■□□□□ 0.27
TRIM40-207ENST00000396581 CLCN1P35523 988 aa16.71■□□□□ 0.27
TRIM40-207ENST00000396581 SPRYD3Q8NCJ5 442 aa16.71■□□□□ 0.27
TRIM40-207ENST00000396581 ZNF428Q96B54 188 aa16.71■□□□□ 0.27
TRIM40-207ENST00000396581 PRR36Q9H6K5 1346 aa16.7■□□□□ 0.26
TRIM40-207ENST00000396581 EIF5BO60841 1220 aaKnown RBP16.7■□□□□ 0.26
TRIM40-207ENST00000396581 XRN1Q8IZH2 1706 aaKnown RBP16.7■□□□□ 0.26
TRIM40-207ENST00000396581 KCNA6P17658 529 aa16.69■□□□□ 0.26
TRIM40-207ENST00000396581 BMP2KLQ5H9B9 411 aa16.69■□□□□ 0.26
TRIM40-207ENST00000396581 PANK2Q9BZ23 570 aa16.69■□□□□ 0.26
TRIM40-207ENST00000396581 PNNQ9H307 717 aaKnown RBP16.69■□□□□ 0.26
TRIM40-207ENST00000396581 GGNBP2Q9H3C7 697 aa16.69■□□□□ 0.26
TRIM40-207ENST00000396581 U2SURPO15042 1029 aaKnown RBP16.68■□□□□ 0.26
TRIM40-207ENST00000396581 RIPK4P57078 832 aa16.68■□□□□ 0.26
TRIM40-207ENST00000396581 CHD1LQ86WJ1 897 aa16.68■□□□□ 0.26
TRIM40-207ENST00000396581 NCKAP5LQ9HCH0 1330 aa16.67■□□□□ 0.26
TRIM40-207ENST00000396581 EDC4Q6P2E9 1401 aaKnown RBP16.67■□□□□ 0.26
TRIM40-207ENST00000396581 PLEKHG3A1L390 1219 aa16.66■□□□□ 0.26
TRIM40-207ENST00000396581 RAB3GAP1Q15042 981 aa16.66■□□□□ 0.26
TRIM40-207ENST00000396581 KIF2CQ99661 725 aa16.66■□□□□ 0.26
TRIM40-207ENST00000396581 GZF1Q9H116 711 aaPredicted RBP16.66■□□□□ 0.26
TRIM40-207ENST00000396581 GRPEL1Q9HAV7 217 aa16.66■□□□□ 0.26
TRIM40-207ENST00000396581 ARHGAP45Q92619 1136 aa16.66■□□□□ 0.26
TRIM40-207ENST00000396581 DIAPH1O60610 1272 aaKnown RBP16.65■□□□□ 0.26
TRIM40-207ENST00000396581 GCC1Q96CN9 775 aa16.65■□□□□ 0.26
TRIM40-207ENST00000396581 NPHP4O75161 1426 aaPredicted RBP16.65■□□□□ 0.26
TRIM40-207ENST00000396581 FCHSD2O94868 740 aa16.65■□□□□ 0.26
TRIM40-207ENST00000396581 PTMSP20962 102 aa16.65■□□□□ 0.26
TRIM40-207ENST00000396581 TNPO1Q92973 898 aaKnown RBP16.65■□□□□ 0.26
TRIM40-207ENST00000396581 CHMP4BQ9H444 224 aaKnown RBP16.65■□□□□ 0.26
TRIM40-207ENST00000396581 LRRC7Q96NW7 1537 aa16.64■□□□□ 0.26
TRIM40-207ENST00000396581 ZBTB7BO15156 539 aaPredicted RBP16.64■□□□□ 0.25
TRIM40-207ENST00000396581 LNPKQ9C0E8 428 aa16.64■□□□□ 0.25
TRIM40-207ENST00000396581 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.63■□□□□ 0.25
TRIM40-207ENST00000396581 CHD2O14647 1828 aaKnown RBP16.63■□□□□ 0.25
TRIM40-207ENST00000396581 CLEC17AQ6ZS10 378 aa16.63■□□□□ 0.25
TRIM40-207ENST00000396581 KIF20BQ96Q89 1820 aa16.62■□□□□ 0.25
TRIM40-207ENST00000396581 SKOR2Q2VWA4 1001 aaPredicted RBP16.62■□□□□ 0.25
TRIM40-207ENST00000396581 GBP4Q96PP9 640 aa16.62■□□□□ 0.25
TRIM40-207ENST00000396581 TOPAZ1Q8N9V7 1692 aa16.61■□□□□ 0.25
TRIM40-207ENST00000396581 ACEP12821 1306 aa16.6■□□□□ 0.25
TRIM40-207ENST00000396581 MON2Q7Z3U7 1717 aa16.6■□□□□ 0.25
TRIM40-207ENST00000396581 NUTM2FA1L443 756 aa16.6■□□□□ 0.25
TRIM40-207ENST00000396581 VAMP4O75379 141 aa16.6■□□□□ 0.25
TRIM40-207ENST00000396581 MRPL50Q8N5N7 158 aaKnown RBP16.6■□□□□ 0.25
TRIM40-207ENST00000396581 AKAP12Q02952 1782 aa16.6■□□□□ 0.25
TRIM40-207ENST00000396581 ABCC4O15439 1325 aa16.59■□□□□ 0.25
TRIM40-207ENST00000396581 ANKARQ7Z5J8 1434 aa16.59■□□□□ 0.25
TRIM40-207ENST00000396581 K7ELQ4 463 aaPredicted RBP16.58■□□□□ 0.25
TRIM40-207ENST00000396581 HSP90AB1P08238 724 aaKnown RBP16.58■□□□□ 0.25
TRIM40-207ENST00000396581 NME9Q86XW9 330 aa16.58■□□□□ 0.25
TRIM40-207ENST00000396581 ARXQ96QS3 562 aa16.58■□□□□ 0.25
TRIM40-207ENST00000396581 TBC1D9Q6ZT07 1266 aa16.58■□□□□ 0.24
TRIM40-207ENST00000396581 IBTKQ9P2D0 1353 aaPredicted RBP16.57■□□□□ 0.24
TRIM40-207ENST00000396581 GAS2L3Q86XJ1 694 aa16.57■□□□□ 0.24
TRIM40-207ENST00000396581 USP6P35125 1406 aa16.57■□□□□ 0.24
TRIM40-207ENST00000396581 ESPNB1AK53 854 aa16.57■□□□□ 0.24
TRIM40-207ENST00000396581 CD2BP2O95400 341 aaKnown RBP16.57■□□□□ 0.24
TRIM40-207ENST00000396581 ZNF853P0CG23 659 aa16.57■□□□□ 0.24
TRIM40-207ENST00000396581 CALD1Q05682 793 aaKnown RBP16.57■□□□□ 0.24
TRIM40-207ENST00000396581 ANKRD45Q5TZF3 282 aa16.57■□□□□ 0.24
TRIM40-207ENST00000396581 SIRT2Q8IXJ6 389 aa16.57■□□□□ 0.24
TRIM40-207ENST00000396581 SSH2Q76I76 1423 aa16.56■□□□□ 0.24
TRIM40-207ENST00000396581 ITSN1Q15811 1721 aa16.56■□□□□ 0.24
TRIM40-207ENST00000396581 KIF24Q5T7B8 1368 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms