RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 E9PCH4 1651 aa7.02□□□□□ -1.29
RFFL-202ENST00000394597 KIDINS220Q9ULH0 1771 aa7.01□□□□□ -1.29
RFFL-202ENST00000394597 TSR2Q969E8 191 aaKnown RBP7.01□□□□□ -1.29
RFFL-202ENST00000394597 ZFYVE9O95405 1425 aa7.01□□□□□ -1.29
RFFL-202ENST00000394597 DIP2CQ9Y2E4 1556 aa7.01□□□□□ -1.29
RFFL-202ENST00000394597 HMMRO75330 724 aa7.01□□□□□ -1.29
RFFL-202ENST00000394597 DMRT2Q9Y5R5 561 aa7.01□□□□□ -1.29
RFFL-202ENST00000394597 TRAK2O60296 914 aa7.01□□□□□ -1.29
RFFL-202ENST00000394597 PDE3AQ14432 1141 aa7.01□□□□□ -1.29
RFFL-202ENST00000394597 KRT28Q7Z3Y7 464 aa7.01□□□□□ -1.29
RFFL-202ENST00000394597 CADPS2Q86UW7 1296 aa7.01□□□□□ -1.29
RFFL-202ENST00000394597 BCAR3O75815 825 aa7□□□□□ -1.29
RFFL-202ENST00000394597 EIF2S2P20042 333 aaKnown RBP7□□□□□ -1.29
RFFL-202ENST00000394597 FBLN1P23142 703 aa7□□□□□ -1.29
RFFL-202ENST00000394597 KCNA4P22459 653 aa7□□□□□ -1.29
RFFL-202ENST00000394597 TTC5Q8N0Z6 440 aa7□□□□□ -1.29
RFFL-202ENST00000394597 PANK1Q8TE04 598 aa7□□□□□ -1.29
RFFL-202ENST00000394597 TWISTNBQ3B726 338 aaPredicted RBP7□□□□□ -1.29
RFFL-202ENST00000394597 POLKQ9UBT6 870 aa7□□□□□ -1.29
RFFL-202ENST00000394597 NLRP1Q9C000 1473 aa7□□□□□ -1.29
RFFL-202ENST00000394597 PLEKHG1Q9ULL1 1385 aa7□□□□□ -1.29
RFFL-202ENST00000394597 ZC3H6P61129 1189 aaKnown RBP7□□□□□ -1.29
RFFL-202ENST00000394597 TPRNQ4KMQ1 711 aa7□□□□□ -1.29
RFFL-202ENST00000394597 APBB1O00213 710 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 TATP17735 454 aaPredicted RBP6.99□□□□□ -1.29
RFFL-202ENST00000394597 CSPP1Q1MSJ5 1256 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 CFAP44Q96MT7 982 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 C19orf44Q9H6X5 657 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 GRPEL1Q9HAV7 217 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 CHMP5Q9NZZ3 219 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 ZRANB1Q9UGI0 708 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 MAP3K4Q9Y6R4 1608 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 DIP2BQ9P265 1576 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 CEP152O94986 1710 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 METP08581 1390 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 NECTIN2Q92692 538 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 MFAP1P55081 439 aaKnown RBP6.99□□□□□ -1.29
RFFL-202ENST00000394597 MAPK8IP2Q13387 824 aaPredicted RBP6.99□□□□□ -1.29
RFFL-202ENST00000394597 ZNF428Q96B54 188 aa6.99□□□□□ -1.29
RFFL-202ENST00000394597 ABCA6Q8N139 1617 aa6.98□□□□□ -1.29
RFFL-202ENST00000394597 HSPA2P54652 639 aa6.98□□□□□ -1.29
RFFL-202ENST00000394597 SKOR2Q2VWA4 1001 aaPredicted RBP6.98□□□□□ -1.29
RFFL-202ENST00000394597 DUSP27Q5VZP5 1158 aa6.98□□□□□ -1.29
RFFL-202ENST00000394597 ZNF330Q9Y3S2 320 aaPredicted RBP6.98□□□□□ -1.29
RFFL-202ENST00000394597 DDX49Q9Y6V7 483 aaKnown RBP6.98□□□□□ -1.29
RFFL-202ENST00000394597 TRPM1Q7Z4N2 1603 aa6.98□□□□□ -1.29
RFFL-202ENST00000394597 PLEKHH1Q9ULM0 1364 aa6.98□□□□□ -1.29
RFFL-202ENST00000394597 FGD1P98174 961 aa6.98□□□□□ -1.29
RFFL-202ENST00000394597 ZNF530Q6P9A1 599 aaPredicted RBP6.98□□□□□ -1.29
RFFL-202ENST00000394597 KDM5AP29375 1690 aaKnown RBP6.98□□□□□ -1.29
RFFL-202ENST00000394597 A2ML1A8K2U0 1454 aa6.98□□□□□ -1.29
RFFL-202ENST00000394597 PLEKHG3A1L390 1219 aa6.98□□□□□ -1.29
RFFL-202ENST00000394597 BCL11BQ9C0K0 894 aaPredicted RBP6.98□□□□□ -1.29
RFFL-202ENST00000394597 NOB1Q9ULX3 412 aaKnown RBP6.98□□□□□ -1.29
RFFL-202ENST00000394597 AGLP35573 1532 aa6.98□□□□□ -1.29
RFFL-202ENST00000394597 UQCRHLA0A096LP55 91 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 UQCRHP07919 91 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 NASPP49321 788 aaPredicted RBP6.97□□□□□ -1.29
RFFL-202ENST00000394597 FKBP5Q13451 457 aaPredicted RBP6.97□□□□□ -1.29
RFFL-202ENST00000394597 CCDC30Q5VVM6 783 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 PRDM11Q9NQV5 511 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 PPRC1Q5VV67 1664 aaKnown RBP6.97□□□□□ -1.29
RFFL-202ENST00000394597 GNAT3A8MTJ3 354 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 FOXD4L1Q9NU39 408 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 IFT57Q9NWB7 429 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 EDC4Q6P2E9 1401 aaKnown RBP6.97□□□□□ -1.29
RFFL-202ENST00000394597 ADGRB3O60242 1522 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 HSP90AB2PQ58FF8 381 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 SPG7Q9UQ90 795 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 INSRP06213 1382 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 MSH6P52701 1360 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 CAMSAP1Q5T5Y3 1602 aa6.97□□□□□ -1.29
RFFL-202ENST00000394597 CCDC27Q2M243 656 aa6.96□□□□□ -1.29
RFFL-202ENST00000394597 TOM1L2Q6ZVM7 507 aa6.96□□□□□ -1.29
RFFL-202ENST00000394597 THUMPD2Q9BTF0 503 aaKnown RBP6.96□□□□□ -1.29
RFFL-202ENST00000394597 NKTRP30414 1462 aaKnown RBP6.96□□□□□ -1.29
RFFL-202ENST00000394597 DDX58O95786 925 aaKnown RBP6.96□□□□□ -1.29
RFFL-202ENST00000394597 SKAP1Q86WV1 359 aa6.96□□□□□ -1.29
RFFL-202ENST00000394597 STRN4Q9NRL3 753 aa6.96□□□□□ -1.29
RFFL-202ENST00000394597 XRCC6P12956 609 aaKnown RBP eCLIP6.96□□□□□ -1.3
RFFL-202ENST00000394597 RARSP54136 660 aaKnown RBP6.96□□□□□ -1.3
RFFL-202ENST00000394597 ANKRD45Q5TZF3 282 aa6.96□□□□□ -1.3
RFFL-202ENST00000394597 ATF7IPQ6VMQ6 1270 aa6.96□□□□□ -1.3
RFFL-202ENST00000394597 IL16Q14005 1332 aa6.96□□□□□ -1.3
RFFL-202ENST00000394597 NEXNQ0ZGT2 675 aa6.96□□□□□ -1.3
RFFL-202ENST00000394597 DCTN1Q14203 1278 aa6.96□□□□□ -1.3
RFFL-202ENST00000394597 MCM10Q7L590 875 aa6.96□□□□□ -1.3
RFFL-202ENST00000394597 PANK2Q9BZ23 570 aa6.96□□□□□ -1.3
RFFL-202ENST00000394597 MCM4P33991 863 aa6.95□□□□□ -1.3
RFFL-202ENST00000394597 CCDC173Q0VFZ6 552 aa6.95□□□□□ -1.3
RFFL-202ENST00000394597 AMOTQ4VCS5 1084 aa6.95□□□□□ -1.3
RFFL-202ENST00000394597 ISY1Q9ULR0 285 aaKnown RBP6.95□□□□□ -1.3
RFFL-202ENST00000394597 MADDQ8WXG6 1647 aa6.95□□□□□ -1.3
RFFL-202ENST00000394597 NPHP1O15259 732 aa6.95□□□□□ -1.3
RFFL-202ENST00000394597 SLC4A2P04920 1241 aa6.95□□□□□ -1.3
RFFL-202ENST00000394597 EIF4A2Q14240 407 aaKnown RBP6.95□□□□□ -1.3
RFFL-202ENST00000394597 ZSCAN30Q86W11 494 aa6.95□□□□□ -1.3
RFFL-202ENST00000394597 NPHP3Q7Z494 1330 aa6.95□□□□□ -1.3
RFFL-202ENST00000394597 FAM135BQ49AJ0 1406 aa6.94□□□□□ -1.3
RFFL-202ENST00000394597 APPP05067 770 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms