RNA–Protein interactions for RNA: ENST00000394331.3

HOXC6-202, Transcript of homeobox C6, humanhuman

TSL 1 (best) BASIC

Gene HOXC6, Length 2,943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6-202ENST00000394331 ZSCAN20P17040 1043 aaPredicted RBP23.39■■□□□ 1.33
HOXC6-202ENST00000394331 GTPBP4Q9BZE4 634 aaKnown RBP23.39■■□□□ 1.33
HOXC6-202ENST00000394331 KIF20AO95235 890 aa23.38■■□□□ 1.33
HOXC6-202ENST00000394331 PDE4CQ08493 712 aa23.38■■□□□ 1.33
HOXC6-202ENST00000394331 U2SURPO15042 1029 aaKnown RBP23.38■■□□□ 1.33
HOXC6-202ENST00000394331 FBXO31Q5XUX0 539 aaPredicted RBP23.38■■□□□ 1.33
HOXC6-202ENST00000394331 STAG3Q9UJ98 1225 aa23.38■■□□□ 1.33
HOXC6-202ENST00000394331 ZKSCAN5Q9Y2L8 839 aa23.38■■□□□ 1.33
HOXC6-202ENST00000394331 PLEKHF1Q96S99 279 aa23.37■■□□□ 1.33
HOXC6-202ENST00000394331 MYO5BQ9ULV0 1848 aa23.37■■□□□ 1.33
HOXC6-202ENST00000394331 CLTCQ00610 1675 aaKnown RBP23.37■■□□□ 1.33
HOXC6-202ENST00000394331 TMPOP42166 694 aaKnown RBP23.36■■□□□ 1.33
HOXC6-202ENST00000394331 SENP3Q9H4L4 574 aaPredicted RBP23.36■■□□□ 1.33
HOXC6-202ENST00000394331 COL3A1P02461 1466 aaPredicted RBP23.35■■□□□ 1.33
HOXC6-202ENST00000394331 RLBP1P12271 317 aa23.35■■□□□ 1.33
HOXC6-202ENST00000394331 BCL2L13Q9BXK5 485 aa23.35■■□□□ 1.33
HOXC6-202ENST00000394331 CD163L1Q9NR16 1453 aa23.35■■□□□ 1.33
HOXC6-202ENST00000394331 ALKQ9UM73 1620 aa23.35■■□□□ 1.33
HOXC6-202ENST00000394331 CDK19Q9BWU1 502 aa23.34■■□□□ 1.33
HOXC6-202ENST00000394331 ZKSCAN2Q63HK3 967 aa23.34■■□□□ 1.33
HOXC6-202ENST00000394331 ZHX1Q9UKY1 873 aaPredicted RBP23.34■■□□□ 1.33
HOXC6-202ENST00000394331 IL16Q14005 1332 aa23.33■■□□□ 1.33
HOXC6-202ENST00000394331 HSP90AB1P08238 724 aaKnown RBP23.32■■□□□ 1.32
HOXC6-202ENST00000394331 CYB5RLQ6IPT4 315 aa23.32■■□□□ 1.32
HOXC6-202ENST00000394331 ARHGEF40Q8TER5 1519 aa23.32■■□□□ 1.32
HOXC6-202ENST00000394331 DIAPH1O60610 1272 aaKnown RBP23.32■■□□□ 1.32
HOXC6-202ENST00000394331 MVPQ14764 893 aaKnown RBP23.31■■□□□ 1.32
HOXC6-202ENST00000394331 ANKRD26Q9UPS8 1709 aa23.31■■□□□ 1.32
HOXC6-202ENST00000394331 PNPLA6Q8IY17 1366 aa23.31■■□□□ 1.32
HOXC6-202ENST00000394331 XPCQ01831 940 aaPredicted RBP23.3■■□□□ 1.32
HOXC6-202ENST00000394331 FAM69CQ0P6D2 419 aa23.3■■□□□ 1.32
HOXC6-202ENST00000394331 TRIM35Q9UPQ4 493 aa23.3■■□□□ 1.32
HOXC6-202ENST00000394331 TNNQ9UQP3 1299 aa23.3■■□□□ 1.32
HOXC6-202ENST00000394331 LETM1O95202 739 aaPredicted RBP23.3■■□□□ 1.32
HOXC6-202ENST00000394331 CABP1Q9NZU7 370 aa23.3■■□□□ 1.32
HOXC6-202ENST00000394331 AGLP35573 1532 aa23.29■■□□□ 1.32
HOXC6-202ENST00000394331 DZIP1LQ8IYY4 767 aaKnown RBP23.29■■□□□ 1.32
HOXC6-202ENST00000394331 HDAC1Q13547 482 aaPredicted RBP23.29■■□□□ 1.32
HOXC6-202ENST00000394331 FTSJ3Q8IY81 847 aaKnown RBP23.29■■□□□ 1.32
HOXC6-202ENST00000394331 REREQ9P2R6 1566 aa23.29■■□□□ 1.32
HOXC6-202ENST00000394331 DDX49Q9Y6V7 483 aaKnown RBP23.29■■□□□ 1.32
HOXC6-202ENST00000394331 TSR2Q969E8 191 aaKnown RBP23.28■■□□□ 1.32
HOXC6-202ENST00000394331 EXOSC9Q06265 439 aaKnown RBP23.28■■□□□ 1.32
HOXC6-202ENST00000394331 CCDC39Q9UFE4 941 aa23.28■■□□□ 1.32
HOXC6-202ENST00000394331 DLC1Q96QB1 1528 aa23.27■■□□□ 1.32
HOXC6-202ENST00000394331 SMC4Q9NTJ3 1288 aa23.27■■□□□ 1.32
HOXC6-202ENST00000394331 PRDM10Q9NQV6 1147 aa23.26■■□□□ 1.31
HOXC6-202ENST00000394331 MYRIPQ8NFW9 859 aa23.26■■□□□ 1.31
HOXC6-202ENST00000394331 FCHSD2O94868 740 aa23.25■■□□□ 1.31
HOXC6-202ENST00000394331 BAG4O95429 457 aaKnown RBP23.25■■□□□ 1.31
HOXC6-202ENST00000394331 K7ELQ4 463 aaPredicted RBP23.24■■□□□ 1.31
HOXC6-202ENST00000394331 PPP4R3BQ5MIZ7 849 aa23.24■■□□□ 1.31
HOXC6-202ENST00000394331 A2ML1A8K2U0 1454 aa23.24■■□□□ 1.31
HOXC6-202ENST00000394331 TAF3Q5VWG9 929 aa23.24■■□□□ 1.31
HOXC6-202ENST00000394331 GTF2F1P35269 517 aaKnown RBP eCLIP23.23■■□□□ 1.31
HOXC6-202ENST00000394331 ATP7BP35670 1465 aa23.23■■□□□ 1.31
HOXC6-202ENST00000394331 GTF2E1P29083 439 aaPredicted RBP23.23■■□□□ 1.31
HOXC6-202ENST00000394331 ZSCAN23Q3MJ62 389 aa23.23■■□□□ 1.31
HOXC6-202ENST00000394331 RIMS2Q9UQ26 1411 aa23.23■■□□□ 1.31
HOXC6-202ENST00000394331 BBXQ8WY36 941 aaPredicted RBP23.22■■□□□ 1.31
HOXC6-202ENST00000394331 SSH1Q8WYL5 1049 aa23.22■■□□□ 1.31
HOXC6-202ENST00000394331 PRIMPOLQ96LW4 560 aa23.22■■□□□ 1.31
HOXC6-202ENST00000394331 DDX19BQ9UMR2 479 aa23.22■■□□□ 1.31
HOXC6-202ENST00000394331 RBSNQ9H1K0 784 aa23.21■■□□□ 1.31
HOXC6-202ENST00000394331 SPATA31D1Q6ZQQ2 1576 aa23.21■■□□□ 1.31
HOXC6-202ENST00000394331 ATF7IPQ6VMQ6 1270 aa23.21■■□□□ 1.31
HOXC6-202ENST00000394331 KIF2CQ99661 725 aa23.21■■□□□ 1.31
HOXC6-202ENST00000394331 DIP2BQ9P265 1576 aa23.2■■□□□ 1.31
HOXC6-202ENST00000394331 TRIM27P14373 513 aa23.2■■□□□ 1.3
HOXC6-202ENST00000394331 SSFA2P28290 1259 aa23.2■■□□□ 1.3
HOXC6-202ENST00000394331 WAPLQ7Z5K2 1190 aa23.19■■□□□ 1.3
HOXC6-202ENST00000394331 CDC42BPGQ6DT37 1551 aa23.19■■□□□ 1.3
HOXC6-202ENST00000394331 HMGN5P82970 282 aaKnown RBP23.19■■□□□ 1.3
HOXC6-202ENST00000394331 KIF16BQ96L93 1317 aa23.19■■□□□ 1.3
HOXC6-202ENST00000394331 IPO8O15397 1037 aaKnown RBP23.19■■□□□ 1.3
HOXC6-202ENST00000394331 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.18■■□□□ 1.3
HOXC6-202ENST00000394331 KIF20BQ96Q89 1820 aa23.18■■□□□ 1.3
HOXC6-202ENST00000394331 POLKQ9UBT6 870 aa23.18■■□□□ 1.3
HOXC6-202ENST00000394331 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.17■■□□□ 1.3
HOXC6-202ENST00000394331 ALDH1L2Q3SY69 923 aa23.16■■□□□ 1.3
HOXC6-202ENST00000394331 ZNF428Q96B54 188 aa23.16■■□□□ 1.3
HOXC6-202ENST00000394331 NOB1Q9ULX3 412 aaKnown RBP23.16■■□□□ 1.3
HOXC6-202ENST00000394331 ITPRIPQ8IWB1 547 aa23.15■■□□□ 1.3
HOXC6-202ENST00000394331 NUCB2P80303 420 aa23.15■■□□□ 1.3
HOXC6-202ENST00000394331 PRKAR2BP31323 418 aa23.15■■□□□ 1.3
HOXC6-202ENST00000394331 LMBRD1Q9NUN5 540 aa23.15■■□□□ 1.3
HOXC6-202ENST00000394331 KIAA2012Q0VF49 1180 aa23.14■■□□□ 1.3
HOXC6-202ENST00000394331 FAM135BQ49AJ0 1406 aa23.14■■□□□ 1.29
HOXC6-202ENST00000394331 CYP2E1P05181 493 aaPredicted RBP23.14■■□□□ 1.29
HOXC6-202ENST00000394331 WASLO00401 505 aaPredicted RBP23.13■■□□□ 1.29
HOXC6-202ENST00000394331 EDC4Q6P2E9 1401 aaKnown RBP23.13■■□□□ 1.29
HOXC6-202ENST00000394331 CAVIN1Q6NZI2 390 aaKnown RBP23.13■■□□□ 1.29
HOXC6-202ENST00000394331 BMP2KLQ5H9B9 411 aa23.12■■□□□ 1.29
HOXC6-202ENST00000394331 ZNF710Q8N1W2 664 aa23.12■■□□□ 1.29
HOXC6-202ENST00000394331 PRIM1P49642 420 aaKnown RBP23.12■■□□□ 1.29
HOXC6-202ENST00000394331 CPSF1Q10570 1443 aaKnown RBP23.12■■□□□ 1.29
HOXC6-202ENST00000394331 LRRC7Q96NW7 1537 aa23.12■■□□□ 1.29
HOXC6-202ENST00000394331 LRSAM1Q6UWE0 723 aa23.12■■□□□ 1.29
HOXC6-202ENST00000394331 HDGFP51858 240 aaKnown RBP23.11■■□□□ 1.29
HOXC6-202ENST00000394331 NFE2L2Q16236 605 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms