RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 C16orf45Q96MC5 204 aaPredicted RBP13.98□□□□□ -0.17
SYNPO-202ENST00000394243 MAP2K1Q02750 393 aaPredicted RBP13.98□□□□□ -0.17
SYNPO-202ENST00000394243 KIAA1328Q86T90 577 aa13.98□□□□□ -0.17
SYNPO-202ENST00000394243 CDK5RAP3Q96JB5 506 aa13.98□□□□□ -0.17
SYNPO-202ENST00000394243 TXLNBQ8N3L3 684 aa13.97□□□□□ -0.17
SYNPO-202ENST00000394243 FAM107BQ9H098 131 aa13.97□□□□□ -0.17
SYNPO-202ENST00000394243 HIP1O00291 1037 aa13.97□□□□□ -0.17
SYNPO-202ENST00000394243 SMTNL1A8MU46 457 aa13.97□□□□□ -0.17
SYNPO-202ENST00000394243 ANKRD1Q15327 319 aa13.97□□□□□ -0.17
SYNPO-202ENST00000394243 FHOD3Q2V2M9 1422 aa13.97□□□□□ -0.17
SYNPO-202ENST00000394243 MINK1Q8N4C8 1332 aaPredicted RBP13.97□□□□□ -0.17
SYNPO-202ENST00000394243 DNAJC2Q99543 621 aaKnown RBP13.97□□□□□ -0.17
SYNPO-202ENST00000394243 CFAP100Q494V2 611 aa13.97□□□□□ -0.17
SYNPO-202ENST00000394243 JAKMIP3Q5VZ66 844 aa13.97□□□□□ -0.17
SYNPO-202ENST00000394243 SMG6Q86US8 1419 aaKnown RBP13.97□□□□□ -0.17
SYNPO-202ENST00000394243 CCAR1Q8IX12 1150 aaKnown RBP13.97□□□□□ -0.17
SYNPO-202ENST00000394243 EXOSC9Q06265 439 aaKnown RBP13.96□□□□□ -0.17
SYNPO-202ENST00000394243 TCP11L2Q8N4U5 519 aa13.96□□□□□ -0.17
SYNPO-202ENST00000394243 CFAP45Q9UL16 551 aa13.96□□□□□ -0.17
SYNPO-202ENST00000394243 MAP9Q49MG5 647 aa13.96□□□□□ -0.17
SYNPO-202ENST00000394243 SFPQP23246 707 aaKnown RBP eCLIP13.96□□□□□ -0.17
SYNPO-202ENST00000394243 EZRP15311 586 aaKnown RBP13.96□□□□□ -0.17
SYNPO-202ENST00000394243 SART3Q15020 963 aaKnown RBP13.96□□□□□ -0.17
SYNPO-202ENST00000394243 TANGO6Q9C0B7 1094 aa13.96□□□□□ -0.17
SYNPO-202ENST00000394243 TRMT1Q9NXH9 659 aaKnown RBP13.96□□□□□ -0.17
SYNPO-202ENST00000394243 STIM1Q13586 685 aa13.96□□□□□ -0.18
SYNPO-202ENST00000394243 CHD1LQ86WJ1 897 aa13.96□□□□□ -0.18
SYNPO-202ENST00000394243 RIC3Q7Z5B4 369 aa13.96□□□□□ -0.18
SYNPO-202ENST00000394243 LMAN1P49257 510 aa13.95□□□□□ -0.18
SYNPO-202ENST00000394243 AIMP1Q12904 312 aaKnown RBP13.95□□□□□ -0.18
SYNPO-202ENST00000394243 MAP4K4O95819 1239 aaPredicted RBP13.95□□□□□ -0.18
SYNPO-202ENST00000394243 MNAT1P51948 309 aa13.95□□□□□ -0.18
SYNPO-202ENST00000394243 SLC26A8Q96RN1 970 aa13.95□□□□□ -0.18
SYNPO-202ENST00000394243 UACAQ9BZF9 1416 aa13.95□□□□□ -0.18
SYNPO-202ENST00000394243 GNAI3P08754 354 aa13.95□□□□□ -0.18
SYNPO-202ENST00000394243 MICALCLQ6ZW33 695 aa13.95□□□□□ -0.18
SYNPO-202ENST00000394243 USP25Q9UHP3 1055 aa13.95□□□□□ -0.18
SYNPO-202ENST00000394243 WASHC2CQ9Y4E1 1318 aa13.95□□□□□ -0.18
SYNPO-202ENST00000394243 ZSCAN12O43309 604 aa13.94□□□□□ -0.18
SYNPO-202ENST00000394243 CCDC183Q5T5S1 534 aa13.94□□□□□ -0.18
SYNPO-202ENST00000394243 BAZ1AQ9NRL2 1556 aaPredicted RBP13.94□□□□□ -0.18
SYNPO-202ENST00000394243 NBPF1Q3BBV0 1214 aa13.94□□□□□ -0.18
SYNPO-202ENST00000394243 SAMD1Q6SPF0 538 aaPredicted RBP13.94□□□□□ -0.18
SYNPO-202ENST00000394243 GBP2P32456 591 aaPredicted RBP13.94□□□□□ -0.18
SYNPO-202ENST00000394243 CLIP2Q9UDT6 1046 aa13.94□□□□□ -0.18
SYNPO-202ENST00000394243 IRX3P78415 501 aaPredicted RBP13.94□□□□□ -0.18
SYNPO-202ENST00000394243 DNAAF4Q8WXU2 420 aa13.93□□□□□ -0.18
SYNPO-202ENST00000394243 KRT18P05783 430 aaKnown RBP13.93□□□□□ -0.18
SYNPO-202ENST00000394243 KIF4BQ2VIQ3 1234 aa13.93□□□□□ -0.18
SYNPO-202ENST00000394243 CCDC113Q9H0I3 377 aa13.93□□□□□ -0.18
SYNPO-202ENST00000394243 TMX1Q9H3N1 280 aa13.93□□□□□ -0.18
SYNPO-202ENST00000394243 KIF5CO60282 957 aa13.93□□□□□ -0.18
SYNPO-202ENST00000394243 PDRG1Q9NUG6 133 aa13.92□□□□□ -0.18
SYNPO-202ENST00000394243 GNAI2P04899 355 aa13.92□□□□□ -0.18
SYNPO-202ENST00000394243 MCM5P33992 734 aa13.92□□□□□ -0.18
SYNPO-202ENST00000394243 BMS1Q14692 1282 aaKnown RBP13.92□□□□□ -0.18
SYNPO-202ENST00000394243 CNKSR2Q8WXI2 1034 aa13.92□□□□□ -0.18
SYNPO-202ENST00000394243 TAF4BQ92750 862 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 TNPO1Q92973 898 aaKnown RBP13.91□□□□□ -0.18
SYNPO-202ENST00000394243 RAPGEF2Q9Y4G8 1499 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 MCM3P25205 808 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 SKAP1Q86WV1 359 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 SMARCC1Q92922 1105 aaPredicted RBP13.91□□□□□ -0.18
SYNPO-202ENST00000394243 RAI14Q9P0K7 980 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 CLCN1P35523 988 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 MVPQ14764 893 aaKnown RBP13.91□□□□□ -0.18
SYNPO-202ENST00000394243 TSR2Q969E8 191 aaKnown RBP13.91□□□□□ -0.18
SYNPO-202ENST00000394243 BCCIPQ9P287 314 aaKnown RBP eCLIP13.91□□□□□ -0.18
SYNPO-202ENST00000394243 NF2P35240 595 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 MTHFSP49914 203 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 CARMIL2Q6F5E8 1435 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 SSFA2P28290 1259 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 PRIMPOLQ96LW4 560 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 PPP2R1AP30153 589 aa13.91□□□□□ -0.18
SYNPO-202ENST00000394243 JAKMIP1Q96N16 626 aaKnown RBP13.9□□□□□ -0.18
SYNPO-202ENST00000394243 CECR2Q9BXF3 1484 aa13.9□□□□□ -0.18
SYNPO-202ENST00000394243 EIF5P55010 431 aaKnown RBP13.9□□□□□ -0.18
SYNPO-202ENST00000394243 ADCY5O95622 1261 aa13.9□□□□□ -0.18
SYNPO-202ENST00000394243 BLOC1S2Q6QNY1 142 aa13.9□□□□□ -0.18
SYNPO-202ENST00000394243 KRT222Q8N1A0 295 aa13.9□□□□□ -0.18
SYNPO-202ENST00000394243 PPP6R1Q9UPN7 881 aa13.9□□□□□ -0.18
SYNPO-202ENST00000394243 ZSCAN31Q96LW9 406 aaPredicted RBP13.89□□□□□ -0.19
SYNPO-202ENST00000394243 SEPT11Q9NVA2 429 aaKnown RBP13.89□□□□□ -0.19
SYNPO-202ENST00000394243 EID1Q9Y6B2 187 aa13.89□□□□□ -0.19
SYNPO-202ENST00000394243 GGNBP2Q9H3C7 697 aa13.89□□□□□ -0.19
SYNPO-202ENST00000394243 TWISTNBQ3B726 338 aaPredicted RBP13.89□□□□□ -0.19
SYNPO-202ENST00000394243 TBC1D2Q9BYX2 928 aa13.89□□□□□ -0.19
SYNPO-202ENST00000394243 ZHX3Q9H4I2 956 aa13.89□□□□□ -0.19
SYNPO-202ENST00000394243 CTR9Q6PD62 1173 aa13.89□□□□□ -0.19
SYNPO-202ENST00000394243 CCDC30Q5VVM6 783 aa13.88□□□□□ -0.19
SYNPO-202ENST00000394243 TBC1D2BQ9UPU7 963 aa13.88□□□□□ -0.19
SYNPO-202ENST00000394243 VGFO15240 615 aaPredicted RBP13.88□□□□□ -0.19
SYNPO-202ENST00000394243 TOP1P11387 765 aaKnown RBP13.88□□□□□ -0.19
SYNPO-202ENST00000394243 FERMT3Q86UX7 667 aa13.88□□□□□ -0.19
SYNPO-202ENST00000394243 PLCD3Q8N3E9 789 aa13.88□□□□□ -0.19
SYNPO-202ENST00000394243 PNISRQ8TF01 805 aaKnown RBP13.88□□□□□ -0.19
SYNPO-202ENST00000394243 ANO10Q9NW15 660 aa13.88□□□□□ -0.19
SYNPO-202ENST00000394243 CEP135Q66GS9 1140 aa13.87□□□□□ -0.19
SYNPO-202ENST00000394243 TRIM22Q8IYM9 498 aa13.87□□□□□ -0.19
SYNPO-202ENST00000394243 IFFO1Q0D2I5 559 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms