RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 EIF4A2Q14240 407 aaKnown RBP23.77■■□□□ 1.4
CCDC88C-203ENST00000389856 NFAT5O94916 1531 aa23.77■■□□□ 1.4
CCDC88C-203ENST00000389856 LTN1O94822 1766 aa23.77■■□□□ 1.4
CCDC88C-203ENST00000389856 PHRF1Q9P1Y6 1649 aaKnown RBP23.77■■□□□ 1.4
CCDC88C-203ENST00000389856 PRKAR2BP31323 418 aa23.77■■□□□ 1.4
CCDC88C-203ENST00000389856 CDCA7LQ96GN5 454 aa23.77■■□□□ 1.4
CCDC88C-203ENST00000389856 PHF23Q9BUL5 403 aaPredicted RBP23.77■■□□□ 1.4
CCDC88C-203ENST00000389856 ARHGEF10O15013 1369 aa23.76■■□□□ 1.39
CCDC88C-203ENST00000389856 SLFN5Q08AF3 891 aa23.76■■□□□ 1.39
CCDC88C-203ENST00000389856 LMOD2Q6P5Q4 547 aa23.76■■□□□ 1.39
CCDC88C-203ENST00000389856 SLAIN2Q9P270 581 aa23.76■■□□□ 1.39
CCDC88C-203ENST00000389856 TMPOP42166 694 aaKnown RBP23.75■■□□□ 1.39
CCDC88C-203ENST00000389856 NEUROD2Q15784 382 aa23.75■■□□□ 1.39
CCDC88C-203ENST00000389856 HSP90AB2PQ58FF8 381 aa23.75■■□□□ 1.39
CCDC88C-203ENST00000389856 RGPD1P0DJD0 1748 aa23.75■■□□□ 1.39
CCDC88C-203ENST00000389856 USP19O94966 1318 aa23.75■■□□□ 1.39
CCDC88C-203ENST00000389856 XPCQ01831 940 aaPredicted RBP23.74■■□□□ 1.39
CCDC88C-203ENST00000389856 TNS3Q68CZ2 1445 aa23.74■■□□□ 1.39
CCDC88C-203ENST00000389856 RCAN3Q9UKA8 241 aa23.73■■□□□ 1.39
CCDC88C-203ENST00000389856 RRP7AQ9Y3A4 280 aaKnown RBP23.73■■□□□ 1.39
CCDC88C-203ENST00000389856 HMOX1P09601 288 aa23.73■■□□□ 1.39
CCDC88C-203ENST00000389856 HOXC9P31274 260 aa23.73■■□□□ 1.39
CCDC88C-203ENST00000389856 LMOD3Q0VAK6 560 aa23.73■■□□□ 1.39
CCDC88C-203ENST00000389856 IRX6P78412 446 aaPredicted RBP23.72■■□□□ 1.39
CCDC88C-203ENST00000389856 PXDNQ92626 1479 aa23.72■■□□□ 1.39
CCDC88C-203ENST00000389856 CALD1Q05682 793 aaKnown RBP23.71■■□□□ 1.39
CCDC88C-203ENST00000389856 DUSP27Q5VZP5 1158 aa23.71■■□□□ 1.39
CCDC88C-203ENST00000389856 BRINP3Q76B58 766 aa23.71■■□□□ 1.39
CCDC88C-203ENST00000389856 TRMT2AQ8IZ69 625 aaKnown RBP23.71■■□□□ 1.39
CCDC88C-203ENST00000389856 MYH16Q9H6N6 1097 aa23.71■■□□□ 1.39
CCDC88C-203ENST00000389856 GCP02774 474 aa23.7■■□□□ 1.39
CCDC88C-203ENST00000389856 NFE2L2Q16236 605 aa23.7■■□□□ 1.39
CCDC88C-203ENST00000389856 IP6K1Q92551 441 aa23.7■■□□□ 1.39
CCDC88C-203ENST00000389856 RIPK4P57078 832 aa23.7■■□□□ 1.38
CCDC88C-203ENST00000389856 IL16Q14005 1332 aa23.69■■□□□ 1.38
CCDC88C-203ENST00000389856 SULT6B1Q6IMI4 303 aa23.69■■□□□ 1.38
CCDC88C-203ENST00000389856 SPATA31A3Q5VYP0 1347 aa23.67■■□□□ 1.38
CCDC88C-203ENST00000389856 IGSF1Q8N6C5 1336 aa23.66■■□□□ 1.38
CCDC88C-203ENST00000389856 MED1Q15648 1581 aaPredicted RBP23.66■■□□□ 1.38
CCDC88C-203ENST00000389856 KDRP35968 1356 aa23.65■■□□□ 1.38
CCDC88C-203ENST00000389856 ABCC6O95255 1503 aa23.64■■□□□ 1.38
CCDC88C-203ENST00000389856 ARHGEF25Q86VW2 580 aa23.64■■□□□ 1.38
CCDC88C-203ENST00000389856 NHSL1Q5SYE7 1610 aa23.63■■□□□ 1.37
CCDC88C-203ENST00000389856 SOS2Q07890 1332 aaPredicted RBP23.63■■□□□ 1.37
CCDC88C-203ENST00000389856 LTBP4Q8N2S1 1624 aa23.63■■□□□ 1.37
CCDC88C-203ENST00000389856 TRIM35Q9UPQ4 493 aa23.62■■□□□ 1.37
CCDC88C-203ENST00000389856 PHACTR3Q96KR7 559 aa23.62■■□□□ 1.37
CCDC88C-203ENST00000389856 EYA1Q99502 592 aa23.62■■□□□ 1.37
CCDC88C-203ENST00000389856 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.61■■□□□ 1.37
CCDC88C-203ENST00000389856 ZBTB7CA1YPR0 619 aa23.6■■□□□ 1.37
CCDC88C-203ENST00000389856 RRP1P56182 461 aaKnown RBP23.6■■□□□ 1.37
CCDC88C-203ENST00000389856 CT47B1P0C2W7 299 aaPredicted RBP23.59■■□□□ 1.37
CCDC88C-203ENST00000389856 MYT1Q01538 1121 aa23.59■■□□□ 1.37
CCDC88C-203ENST00000389856 AEBP1Q8IUX7 1158 aa23.59■■□□□ 1.37
CCDC88C-203ENST00000389856 DDX17Q92841 729 aaKnown RBP23.59■■□□□ 1.37
CCDC88C-203ENST00000389856 SPINK5Q9NQ38 1064 aaPredicted RBP23.59■■□□□ 1.37
CCDC88C-203ENST00000389856 DLG5Q8TDM6 1919 aa23.58■■□□□ 1.37
CCDC88C-203ENST00000389856 GAS2L2Q8NHY3 880 aa23.58■■□□□ 1.36
CCDC88C-203ENST00000389856 LTV1Q96GA3 475 aaPredicted RBP23.58■■□□□ 1.36
CCDC88C-203ENST00000389856 CRYBG1Q9Y4K1 1723 aa23.57■■□□□ 1.36
CCDC88C-203ENST00000389856 RBM19Q9Y4C8 960 aaKnown RBP23.57■■□□□ 1.36
CCDC88C-203ENST00000389856 CPDO75976 1380 aa23.55■■□□□ 1.36
CCDC88C-203ENST00000389856 GNAI1P63096 354 aa23.54■■□□□ 1.36
CCDC88C-203ENST00000389856 FAM208AQ9UK61 1670 aaKnown RBP23.54■■□□□ 1.36
CCDC88C-203ENST00000389856 PLEKHG5O94827 1062 aa23.53■■□□□ 1.36
CCDC88C-203ENST00000389856 IFT57Q9NWB7 429 aa23.52■■□□□ 1.36
CCDC88C-203ENST00000389856 FANCIQ9NVI1 1328 aa23.52■■□□□ 1.36
CCDC88C-203ENST00000389856 HTATSF1O43719 755 aaKnown RBP23.51■■□□□ 1.35
CCDC88C-203ENST00000389856 ZC3H6P61129 1189 aaKnown RBP23.51■■□□□ 1.35
CCDC88C-203ENST00000389856 B4GALNT3Q6L9W6 998 aa23.51■■□□□ 1.35
CCDC88C-203ENST00000389856 ANKRD24Q8TF21 1146 aa23.51■■□□□ 1.35
CCDC88C-203ENST00000389856 RTF1Q92541 710 aaKnown RBP23.51■■□□□ 1.35
CCDC88C-203ENST00000389856 ROBO1Q9Y6N7 1651 aa23.51■■□□□ 1.35
CCDC88C-203ENST00000389856 HAP1P54257 671 aaPredicted RBP23.51■■□□□ 1.35
CCDC88C-203ENST00000389856 AHDC1Q5TGY3 1603 aaPredicted RBP23.5■■□□□ 1.35
CCDC88C-203ENST00000389856 CAMTA1Q9Y6Y1 1673 aa23.5■■□□□ 1.35
CCDC88C-203ENST00000389856 CCDC136Q96JN2 1154 aa23.49■■□□□ 1.35
CCDC88C-203ENST00000389856 NCAPD2Q15021 1401 aa23.48■■□□□ 1.35
CCDC88C-203ENST00000389856 COL18A1P39060 1754 aa23.47■■□□□ 1.35
CCDC88C-203ENST00000389856 ABCA3Q99758 1704 aa23.47■■□□□ 1.35
CCDC88C-203ENST00000389856 NBPF6Q5VWK0 638 aa23.47■■□□□ 1.35
CCDC88C-203ENST00000389856 LRRC59Q96AG4 307 aaKnown RBP23.47■■□□□ 1.35
CCDC88C-203ENST00000389856 NBPF4Q96M43 638 aa23.47■■□□□ 1.35
CCDC88C-203ENST00000389856 ERBB3P21860 1342 aa23.47■■□□□ 1.35
CCDC88C-203ENST00000389856 PLEKHG2Q9H7P9 1386 aa23.46■■□□□ 1.35
CCDC88C-203ENST00000389856 RGPD5Q99666 1765 aa23.46■■□□□ 1.35
CCDC88C-203ENST00000389856 MTHFSDQ2M296 383 aaKnown RBP23.46■■□□□ 1.35
CCDC88C-203ENST00000389856 ZNF428Q96B54 188 aa23.46■■□□□ 1.35
CCDC88C-203ENST00000389856 CFAP44Q96MT7 982 aa23.46■■□□□ 1.35
CCDC88C-203ENST00000389856 TOM1O60784 492 aa23.45■■□□□ 1.34
CCDC88C-203ENST00000389856 AMOTQ4VCS5 1084 aa23.45■■□□□ 1.34
CCDC88C-203ENST00000389856 CABLES1Q8TDN4 633 aa23.45■■□□□ 1.34
CCDC88C-203ENST00000389856 KIAA0232Q92628 1395 aa23.45■■□□□ 1.34
CCDC88C-203ENST00000389856 RGPD2P0DJD1 1756 aa23.45■■□□□ 1.34
CCDC88C-203ENST00000389856 ILDR1Q86SU0 546 aaPredicted RBP23.44■■□□□ 1.34
CCDC88C-203ENST00000389856 LAS1LQ9Y4W2 734 aaKnown RBP23.44■■□□□ 1.34
CCDC88C-203ENST00000389856 GNAT3A8MTJ3 354 aa23.44■■□□□ 1.34
CCDC88C-203ENST00000389856 PLEKHO1Q53GL0 409 aaPredicted RBP23.44■■□□□ 1.34
CCDC88C-203ENST00000389856 TSR2Q969E8 191 aaKnown RBP23.44■■□□□ 1.34
CCDC88C-203ENST00000389856 LMO7Q8WWI1 1683 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms