RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 OAS3Q9Y6K5 1087 aaKnown RBP2.53□□□□□ -2
RNU6-540P-201ENST00000384622 FCHSD2O94868 740 aa2.52□□□□□ -2.01
RNU6-540P-201ENST00000384622 HOXB4P17483 251 aaPredicted RBP2.52□□□□□ -2.01
RNU6-540P-201ENST00000384622 C1orf229Q6ZS94 237 aaPredicted RBP2.52□□□□□ -2.01
RNU6-540P-201ENST00000384622 CUEDC1Q9NWM3 386 aaPredicted RBP2.52□□□□□ -2.01
RNU6-540P-201ENST00000384622 SENP3-EIF4A1A0A087X0R7 540 aa2.51□□□□□ -2.01
RNU6-540P-201ENST00000384622 SPATA31C1P0DKV0 1188 aa2.51□□□□□ -2.01
RNU6-540P-201ENST00000384622 VARSP26640 1264 aaKnown RBP2.51□□□□□ -2.01
RNU6-540P-201ENST00000384622 GP2P55259 537 aaKnown RBP2.51□□□□□ -2.01
RNU6-540P-201ENST00000384622 TRIM52Q96A61 297 aa2.51□□□□□ -2.01
RNU6-540P-201ENST00000384622 GRXCR2A6NFK2 248 aa2.5□□□□□ -2.01
RNU6-540P-201ENST00000384622 POU5F2Q8N7G0 328 aa2.5□□□□□ -2.01
RNU6-540P-201ENST00000384622 TRERF1Q96PN7 1200 aa2.5□□□□□ -2.01
RNU6-540P-201ENST00000384622 AVENQ9NQS1 362 aaPredicted RBP2.5□□□□□ -2.01
RNU6-540P-201ENST00000384622 NPDC1Q9NQX5 325 aaPredicted RBP2.5□□□□□ -2.01
RNU6-540P-201ENST00000384622 MAP2K3P46734 347 aa2.49□□□□□ -2.01
RNU6-540P-201ENST00000384622 ARID5BQ14865 1188 aa2.49□□□□□ -2.01
RNU6-540P-201ENST00000384622 PTCRAQ6ISU1 281 aaPredicted RBP2.49□□□□□ -2.01
RNU6-540P-201ENST00000384622 ZNF837Q96EG3 531 aaPredicted RBP2.49□□□□□ -2.01
RNU6-540P-201ENST00000384622 GMCL1Q96IK5 515 aa2.49□□□□□ -2.01
RNU6-540P-201ENST00000384622 DBX1A6NMT0 343 aa2.48□□□□□ -2.01
RNU6-540P-201ENST00000384622 APBA3O96018 575 aa2.48□□□□□ -2.01
RNU6-540P-201ENST00000384622 NR3C2P08235 984 aa2.48□□□□□ -2.01
RNU6-540P-201ENST00000384622 SSTR4P31391 388 aa2.48□□□□□ -2.01
RNU6-540P-201ENST00000384622 NR5A1Q13285 461 aa2.48□□□□□ -2.01
RNU6-540P-201ENST00000384622 Q3C1V9 767 aa2.48□□□□□ -2.01
RNU6-540P-201ENST00000384622 USB1Q9BQ65 265 aaKnown RBP2.48□□□□□ -2.01
RNU6-540P-201ENST00000384622 GDF2Q9UK05 429 aaPredicted RBP2.48□□□□□ -2.01
RNU6-540P-201ENST00000384622 SPINT1O43278 529 aa2.47□□□□□ -2.01
RNU6-540P-201ENST00000384622 DGKGP49619 791 aa2.47□□□□□ -2.01
RNU6-540P-201ENST00000384622 TRIM22Q8IYM9 498 aa2.47□□□□□ -2.01
RNU6-540P-201ENST00000384622 CAMK2BQ13554 666 aa2.46□□□□□ -2.02
RNU6-540P-201ENST00000384622 RDH13Q8NBN7 331 aa2.46□□□□□ -2.02
RNU6-540P-201ENST00000384622 GTPBP3Q969Y2 492 aaKnown RBP2.46□□□□□ -2.02
RNU6-540P-201ENST00000384622 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 PDIA6Q15084 440 aa2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 DBN1Q16643 649 aa2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 LINC01559Q495D7 138 aa2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 GRIPAP1Q4V328 841 aa2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 GOLGA6L1Q8N7Z2 621 aa2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 FAM174AQ8TBP5 190 aa2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 KLRG1Q96E93 195 aa2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 BTBD6Q96KE9 485 aa2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 CDK15Q96Q40 435 aa2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 PLVAPQ9BX97 442 aa2.45□□□□□ -2.02
RNU6-540P-201ENST00000384622 CTSOP43234 321 aaPredicted RBP2.44□□□□□ -2.02
RNU6-540P-201ENST00000384622 MICALL1Q8N3F8 863 aa2.44□□□□□ -2.02
RNU6-540P-201ENST00000384622 BAP1Q92560 729 aa2.44□□□□□ -2.02
RNU6-540P-201ENST00000384622 NUDT12Q9BQG2 462 aa2.44□□□□□ -2.02
RNU6-540P-201ENST00000384622 RYDENQ9NUL5 291 aaKnown RBP2.44□□□□□ -2.02
RNU6-540P-201ENST00000384622 ADGRG1Q9Y653 693 aa2.44□□□□□ -2.02
RNU6-540P-201ENST00000384622 SPDYE16A6NNV3 312 aaPredicted RBP2.43□□□□□ -2.02
RNU6-540P-201ENST00000384622 H7C1W4 665 aa2.43□□□□□ -2.02
RNU6-540P-201ENST00000384622 COL9A3Q14050 684 aaPredicted RBP2.43□□□□□ -2.02
RNU6-540P-201ENST00000384622 PRRT3Q5FWE3 981 aa2.43□□□□□ -2.02
RNU6-540P-201ENST00000384622 RIPOR1Q6ZS17 1223 aa2.43□□□□□ -2.02
RNU6-540P-201ENST00000384622 IGHA2P01877 340 aa2.42□□□□□ -2.02
RNU6-540P-201ENST00000384622 GRM5P41594 1212 aa2.42□□□□□ -2.02
RNU6-540P-201ENST00000384622 CD97P48960 835 aa2.42□□□□□ -2.02
RNU6-540P-201ENST00000384622 ZNF124Q15973 351 aa2.42□□□□□ -2.02
RNU6-540P-201ENST00000384622 FAM161AQ3B820 660 aa2.42□□□□□ -2.02
RNU6-540P-201ENST00000384622 PRPF38BQ5VTL8 546 aaKnown RBP2.42□□□□□ -2.02
RNU6-540P-201ENST00000384622 ZNF511Q8NB15 262 aa2.42□□□□□ -2.02
RNU6-540P-201ENST00000384622 TP53INP1Q96A56 240 aa2.42□□□□□ -2.02
RNU6-540P-201ENST00000384622 NACC1Q96RE7 527 aa2.42□□□□□ -2.02
RNU6-540P-201ENST00000384622 POLMQ9NP87 494 aaPredicted RBP2.42□□□□□ -2.02
RNU6-540P-201ENST00000384622 SPDYE3A6NKU9 549 aa2.41□□□□□ -2.02
RNU6-540P-201ENST00000384622 KRTAP19-4Q3LI73 84 aa2.41□□□□□ -2.02
RNU6-540P-201ENST00000384622 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.41□□□□□ -2.02
RNU6-540P-201ENST00000384622 RNF217Q8TC41 542 aa2.41□□□□□ -2.02
RNU6-540P-201ENST00000384622 TRIM11Q96F44 468 aa2.41□□□□□ -2.02
RNU6-540P-201ENST00000384622 ECM2O94769 699 aaPredicted RBP2.4□□□□□ -2.03
RNU6-540P-201ENST00000384622 JUNDP17535 347 aa2.4□□□□□ -2.03
RNU6-540P-201ENST00000384622 GCGRP47871 477 aa2.4□□□□□ -2.03
RNU6-540P-201ENST00000384622 DBX2Q6ZNG2 339 aa2.4□□□□□ -2.03
RNU6-540P-201ENST00000384622 INSM2Q96T92 566 aaPredicted RBP2.4□□□□□ -2.03
RNU6-540P-201ENST00000384622 UNC93B1Q9H1C4 597 aa2.4□□□□□ -2.03
RNU6-540P-201ENST00000384622 EMILIN1Q9Y6C2 1016 aa2.4□□□□□ -2.03
RNU6-540P-201ENST00000384622 RGL2O15211 777 aa2.39□□□□□ -2.03
RNU6-540P-201ENST00000384622 ASIC4Q96FT7 647 aa2.39□□□□□ -2.03
RNU6-540P-201ENST00000384622 GGA1Q9UJY5 639 aa2.39□□□□□ -2.03
RNU6-540P-201ENST00000384622 DDX11L8A8MPP1 907 aa2.38□□□□□ -2.03
RNU6-540P-201ENST00000384622 EPXP11678 715 aa2.38□□□□□ -2.03
RNU6-540P-201ENST00000384622 CBLBQ13191 982 aa2.38□□□□□ -2.03
RNU6-540P-201ENST00000384622 ZNF648Q5T619 568 aaPredicted RBP2.38□□□□□ -2.03
RNU6-540P-201ENST00000384622 SLCO4C1Q6ZQN7 724 aa2.38□□□□□ -2.03
RNU6-540P-201ENST00000384622 Q6ZVU0 165 aa2.38□□□□□ -2.03
RNU6-540P-201ENST00000384622 CHSY3Q70JA7 882 aa2.38□□□□□ -2.03
RNU6-540P-201ENST00000384622 ADGRE2Q9UHX3 823 aa2.38□□□□□ -2.03
RNU6-540P-201ENST00000384622 PKN1Q16512 942 aa2.37□□□□□ -2.03
RNU6-540P-201ENST00000384622 LYSMD3Q7Z3D4 306 aa2.37□□□□□ -2.03
RNU6-540P-201ENST00000384622 SUV39H1O43463 412 aa2.36□□□□□ -2.03
RNU6-540P-201ENST00000384622 CCNYL3P0C7X3 344 aa2.36□□□□□ -2.03
RNU6-540P-201ENST00000384622 RELBQ01201 579 aa2.36□□□□□ -2.03
RNU6-540P-201ENST00000384622 GRIK4Q16099 956 aa2.36□□□□□ -2.03
RNU6-540P-201ENST00000384622 CFHR5Q9BXR6 569 aa2.36□□□□□ -2.03
RNU6-540P-201ENST00000384622 KIAA1324LA8MWY0 1029 aaPredicted RBP2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 C9orf172C9J069 976 aa2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 FAM229AH3BQW9 127 aa2.35□□□□□ -2.03
RNU6-540P-201ENST00000384622 MED26O95402 600 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms