RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 SPATA31A3Q5VYP0 1347 aa16.35■□□□□ 0.21
CIITA-202ENST00000381835 EIF4A2Q14240 407 aaKnown RBP16.34■□□□□ 0.21
CIITA-202ENST00000381835 RUNDC1Q96C34 613 aa16.34■□□□□ 0.21
CIITA-202ENST00000381835 NFAT5O94916 1531 aa16.34■□□□□ 0.21
CIITA-202ENST00000381835 USP19O94966 1318 aa16.34■□□□□ 0.21
CIITA-202ENST00000381835 SOS2Q07890 1332 aaPredicted RBP16.34■□□□□ 0.21
CIITA-202ENST00000381835 HMOX1P09601 288 aa16.33■□□□□ 0.2
CIITA-202ENST00000381835 SLIT3O75094 1523 aa16.33■□□□□ 0.2
CIITA-202ENST00000381835 ROBO1Q9Y6N7 1651 aa16.33■□□□□ 0.2
CIITA-202ENST00000381835 HOXC9P31274 260 aa16.33■□□□□ 0.2
CIITA-202ENST00000381835 CABLES1Q8TDN4 633 aa16.33■□□□□ 0.2
CIITA-202ENST00000381835 NHSL1Q5SYE7 1610 aa16.32■□□□□ 0.2
CIITA-202ENST00000381835 ARHGEF10O15013 1369 aa16.32■□□□□ 0.2
CIITA-202ENST00000381835 MED1Q15648 1581 aaPredicted RBP16.31■□□□□ 0.2
CIITA-202ENST00000381835 NEUROD2Q15784 382 aa16.31■□□□□ 0.2
CIITA-202ENST00000381835 B4GALNT3Q6L9W6 998 aa16.31■□□□□ 0.2
CIITA-202ENST00000381835 TCP11L2Q8N4U5 519 aa16.31■□□□□ 0.2
CIITA-202ENST00000381835 ZC3H6P61129 1189 aaKnown RBP16.3■□□□□ 0.2
CIITA-202ENST00000381835 RRP7AQ9Y3A4 280 aaKnown RBP16.3■□□□□ 0.2
CIITA-202ENST00000381835 KIF24Q5T7B8 1368 aa16.3■□□□□ 0.2
CIITA-202ENST00000381835 FCHSD2O94868 740 aa16.3■□□□□ 0.2
CIITA-202ENST00000381835 LTV1Q96GA3 475 aaPredicted RBP16.3■□□□□ 0.2
CIITA-202ENST00000381835 PRKAR2BP31323 418 aa16.29■□□□□ 0.2
CIITA-202ENST00000381835 ARHGEF25Q86VW2 580 aa16.29■□□□□ 0.2
CIITA-202ENST00000381835 PLEKHF1Q96S99 279 aa16.29■□□□□ 0.2
CIITA-202ENST00000381835 RSPH6AQ9H0K4 717 aa16.29■□□□□ 0.2
CIITA-202ENST00000381835 MAPK8IP3Q9UPT6 1336 aa16.29■□□□□ 0.2
CIITA-202ENST00000381835 IP6K1Q92551 441 aa16.29■□□□□ 0.2
CIITA-202ENST00000381835 PNNQ9H307 717 aaKnown RBP16.29■□□□□ 0.2
CIITA-202ENST00000381835 RTL1A6NKG5 1358 aa16.28■□□□□ 0.2
CIITA-202ENST00000381835 TOM1O60784 492 aa16.28■□□□□ 0.2
CIITA-202ENST00000381835 PIP4K2BP78356 416 aa16.28■□□□□ 0.2
CIITA-202ENST00000381835 PHRF1Q9P1Y6 1649 aaKnown RBP16.28■□□□□ 0.2
CIITA-202ENST00000381835 SULT6B1Q6IMI4 303 aa16.28■□□□□ 0.2
CIITA-202ENST00000381835 IQSEC2Q5JU85 1478 aa16.27■□□□□ 0.19
CIITA-202ENST00000381835 NEFMP07197 916 aa16.27■□□□□ 0.19
CIITA-202ENST00000381835 AEBP1Q8IUX7 1158 aa16.27■□□□□ 0.19
CIITA-202ENST00000381835 CDCA7LQ96GN5 454 aa16.26■□□□□ 0.19
CIITA-202ENST00000381835 CRYBG1Q9Y4K1 1723 aa16.26■□□□□ 0.19
CIITA-202ENST00000381835 RGPD1P0DJD0 1748 aa16.25■□□□□ 0.19
CIITA-202ENST00000381835 UBAP1LF5GYI3 381 aa16.25■□□□□ 0.19
CIITA-202ENST00000381835 HAP1P54257 671 aaPredicted RBP16.25■□□□□ 0.19
CIITA-202ENST00000381835 EYA1Q99502 592 aa16.25■□□□□ 0.19
CIITA-202ENST00000381835 RGPD5Q99666 1765 aa16.24■□□□□ 0.19
CIITA-202ENST00000381835 PDE3BQ13370 1112 aa16.24■□□□□ 0.19
CIITA-202ENST00000381835 PHACTR3Q96KR7 559 aa16.24■□□□□ 0.19
CIITA-202ENST00000381835 TMPOP42166 694 aaKnown RBP16.24■□□□□ 0.19
CIITA-202ENST00000381835 NGEFQ8N5V2 710 aa16.24■□□□□ 0.19
CIITA-202ENST00000381835 AXIN2Q9Y2T1 843 aa16.24■□□□□ 0.19
CIITA-202ENST00000381835 LRRC59Q96AG4 307 aaKnown RBP16.23■□□□□ 0.19
CIITA-202ENST00000381835 ZNF521Q96K83 1311 aa16.23■□□□□ 0.19
CIITA-202ENST00000381835 AHDC1Q5TGY3 1603 aaPredicted RBP16.23■□□□□ 0.19
CIITA-202ENST00000381835 WWC1Q8IX03 1113 aa16.23■□□□□ 0.19
CIITA-202ENST00000381835 CHRNA2Q15822 529 aa16.22■□□□□ 0.19
CIITA-202ENST00000381835 IGSF1Q8N6C5 1336 aa16.22■□□□□ 0.19
CIITA-202ENST00000381835 KIAA0232Q92628 1395 aa16.22■□□□□ 0.19
CIITA-202ENST00000381835 GOLGA2Q08379 1002 aa16.22■□□□□ 0.19
CIITA-202ENST00000381835 RIPK4P57078 832 aa16.21■□□□□ 0.19
CIITA-202ENST00000381835 ANKRD24Q8TF21 1146 aa16.21■□□□□ 0.19
CIITA-202ENST00000381835 RGPD2P0DJD1 1756 aa16.21■□□□□ 0.19
CIITA-202ENST00000381835 PHLPP1O60346 1717 aa16.21■□□□□ 0.19
CIITA-202ENST00000381835 USHBP1Q8N6Y0 703 aa16.2■□□□□ 0.18
CIITA-202ENST00000381835 CERKQ8TCT0 537 aa16.2■□□□□ 0.18
CIITA-202ENST00000381835 ABCA3Q99758 1704 aa16.2■□□□□ 0.18
CIITA-202ENST00000381835 NBPF6Q5VWK0 638 aa16.19■□□□□ 0.18
CIITA-202ENST00000381835 NBPF4Q96M43 638 aa16.19■□□□□ 0.18
CIITA-202ENST00000381835 CCDC27Q2M243 656 aa16.19■□□□□ 0.18
CIITA-202ENST00000381835 PRDM11Q9NQV5 511 aa16.19■□□□□ 0.18
CIITA-202ENST00000381835 KDRP35968 1356 aa16.19■□□□□ 0.18
CIITA-202ENST00000381835 NFE2L2Q16236 605 aa16.18■□□□□ 0.18
CIITA-202ENST00000381835 PHF23Q9BUL5 403 aaPredicted RBP16.18■□□□□ 0.18
CIITA-202ENST00000381835 SPINK5Q9NQ38 1064 aaPredicted RBP16.18■□□□□ 0.18
CIITA-202ENST00000381835 COL18A1P39060 1754 aa16.18■□□□□ 0.18
CIITA-202ENST00000381835 CPDO75976 1380 aa16.18■□□□□ 0.18
CIITA-202ENST00000381835 DLG5Q8TDM6 1919 aa16.18■□□□□ 0.18
CIITA-202ENST00000381835 TRIM35Q9UPQ4 493 aa16.18■□□□□ 0.18
CIITA-202ENST00000381835 ERBB3P21860 1342 aa16.17■□□□□ 0.18
CIITA-202ENST00000381835 NCBP3Q53F19 620 aaKnown RBP16.17■□□□□ 0.18
CIITA-202ENST00000381835 SLFN5Q08AF3 891 aa16.16■□□□□ 0.18
CIITA-202ENST00000381835 COL16A1Q07092 1604 aaPredicted RBP16.16■□□□□ 0.18
CIITA-202ENST00000381835 WDR63Q8IWG1 891 aa16.16■□□□□ 0.18
CIITA-202ENST00000381835 CSB-PGBD3P0DP91 1061 aa16.15■□□□□ 0.18
CIITA-202ENST00000381835 DUSP27Q5VZP5 1158 aa16.15■□□□□ 0.18
CIITA-202ENST00000381835 E9PSI1 815 aa16.14■□□□□ 0.18
CIITA-202ENST00000381835 NLRP2Q9NX02 1062 aa16.14■□□□□ 0.17
CIITA-202ENST00000381835 CCDC136Q96JN2 1154 aa16.13■□□□□ 0.17
CIITA-202ENST00000381835 MTHFSDQ2M296 383 aaKnown RBP16.13■□□□□ 0.17
CIITA-202ENST00000381835 RNF123Q5XPI4 1314 aa16.13■□□□□ 0.17
CIITA-202ENST00000381835 ABCC6O95255 1503 aa16.13■□□□□ 0.17
CIITA-202ENST00000381835 COL22A1Q8NFW1 1626 aaPredicted RBP16.12■□□□□ 0.17
CIITA-202ENST00000381835 FAM83GA6ND36 823 aa16.12■□□□□ 0.17
CIITA-202ENST00000381835 TRMT2AQ8IZ69 625 aaKnown RBP16.12■□□□□ 0.17
CIITA-202ENST00000381835 THUMPD2Q9BTF0 503 aaKnown RBP16.12■□□□□ 0.17
CIITA-202ENST00000381835 CAMTA1Q9Y6Y1 1673 aa16.11■□□□□ 0.17
CIITA-202ENST00000381835 NOP58Q9Y2X3 529 aaKnown RBP16.11■□□□□ 0.17
CIITA-202ENST00000381835 LMOD3Q0VAK6 560 aa16.11■□□□□ 0.17
CIITA-202ENST00000381835 DCTN1Q14203 1278 aa16.11■□□□□ 0.17
CIITA-202ENST00000381835 GAS2L2Q8NHY3 880 aa16.1■□□□□ 0.17
CIITA-202ENST00000381835 LMO7Q8WWI1 1683 aa16.1■□□□□ 0.17
CIITA-202ENST00000381835 STRN4Q9NRL3 753 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms