RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 TRMT2AQ8IZ69 625 aaKnown RBP13.82□□□□□ -0.2
NEDD9-201ENST00000379433 TTC21BQ7Z4L5 1316 aa13.81□□□□□ -0.2
NEDD9-201ENST00000379433 ABTB2Q8N961 1025 aa13.81□□□□□ -0.2
NEDD9-201ENST00000379433 PDE4AP27815 886 aa13.81□□□□□ -0.2
NEDD9-201ENST00000379433 MCM10Q7L590 875 aa13.81□□□□□ -0.2
NEDD9-201ENST00000379433 SSH1Q8WYL5 1049 aa13.81□□□□□ -0.2
NEDD9-201ENST00000379433 ANP32AP39687 249 aaKnown RBP13.8□□□□□ -0.2
NEDD9-201ENST00000379433 NINLQ9Y2I6 1382 aa13.8□□□□□ -0.2
NEDD9-201ENST00000379433 KRT24Q2M2I5 525 aa13.8□□□□□ -0.2
NEDD9-201ENST00000379433 WDR63Q8IWG1 891 aa13.8□□□□□ -0.2
NEDD9-201ENST00000379433 ADAMTS13Q76LX8 1427 aa13.8□□□□□ -0.2
NEDD9-201ENST00000379433 NBR1Q14596 966 aa13.8□□□□□ -0.2
NEDD9-201ENST00000379433 ANKLE2Q86XL3 938 aa13.8□□□□□ -0.2
NEDD9-201ENST00000379433 USHBP1Q8N6Y0 703 aa13.8□□□□□ -0.2
NEDD9-201ENST00000379433 TSPYL6Q8N831 410 aa13.79□□□□□ -0.2
NEDD9-201ENST00000379433 ZNF692Q9BU19 519 aaPredicted RBP13.79□□□□□ -0.2
NEDD9-201ENST00000379433 NOB1Q9ULX3 412 aaKnown RBP13.79□□□□□ -0.2
NEDD9-201ENST00000379433 PTPRUQ92729 1446 aa13.79□□□□□ -0.2
NEDD9-201ENST00000379433 FOXO3O43524 673 aa13.79□□□□□ -0.2
NEDD9-201ENST00000379433 FCHSD2O94868 740 aa13.79□□□□□ -0.2
NEDD9-201ENST00000379433 CNPY4Q8N129 248 aa13.79□□□□□ -0.2
NEDD9-201ENST00000379433 NECTIN2Q92692 538 aa13.79□□□□□ -0.2
NEDD9-201ENST00000379433 EIF4A2Q14240 407 aaKnown RBP13.78□□□□□ -0.2
NEDD9-201ENST00000379433 INSRP06213 1382 aa13.77□□□□□ -0.2
NEDD9-201ENST00000379433 IL13P35225 146 aa13.77□□□□□ -0.2
NEDD9-201ENST00000379433 CPS1P31327 1500 aa13.77□□□□□ -0.21
NEDD9-201ENST00000379433 SLC4A3P48751 1232 aa13.76□□□□□ -0.21
NEDD9-201ENST00000379433 HSPA2P54652 639 aa13.76□□□□□ -0.21
NEDD9-201ENST00000379433 C1orf115Q9H7X2 142 aa13.76□□□□□ -0.21
NEDD9-201ENST00000379433 PSME1Q06323 249 aa13.76□□□□□ -0.21
NEDD9-201ENST00000379433 TBX22Q9Y458 520 aa13.76□□□□□ -0.21
NEDD9-201ENST00000379433 ZKSCAN2Q63HK3 967 aa13.75□□□□□ -0.21
NEDD9-201ENST00000379433 PNNQ9H307 717 aaKnown RBP13.75□□□□□ -0.21
NEDD9-201ENST00000379433 PCDHB15Q9Y5E8 787 aa13.75□□□□□ -0.21
NEDD9-201ENST00000379433 PLEKHG1Q9ULL1 1385 aa13.75□□□□□ -0.21
NEDD9-201ENST00000379433 NFE2L2Q16236 605 aa13.75□□□□□ -0.21
NEDD9-201ENST00000379433 EDC4Q6P2E9 1401 aaKnown RBP13.75□□□□□ -0.21
NEDD9-201ENST00000379433 CENPQQ7L2Z9 268 aaPredicted RBP13.75□□□□□ -0.21
NEDD9-201ENST00000379433 DZIP1LQ8IYY4 767 aaKnown RBP13.75□□□□□ -0.21
NEDD9-201ENST00000379433 DDX17Q92841 729 aaKnown RBP13.75□□□□□ -0.21
NEDD9-201ENST00000379433 REREQ9P2R6 1566 aa13.75□□□□□ -0.21
NEDD9-201ENST00000379433 TRIM27P14373 513 aa13.74□□□□□ -0.21
NEDD9-201ENST00000379433 SETD1BQ9UPS6 1966 aaKnown RBP13.74□□□□□ -0.21
NEDD9-201ENST00000379433 MAP3K19Q56UN5 1328 aa13.74□□□□□ -0.21
NEDD9-201ENST00000379433 ORAI2Q96SN7 254 aa13.74□□□□□ -0.21
NEDD9-201ENST00000379433 NLRP1Q9C000 1473 aa13.74□□□□□ -0.21
NEDD9-201ENST00000379433 BBXQ8WY36 941 aaPredicted RBP13.74□□□□□ -0.21
NEDD9-201ENST00000379433 NGEFQ8N5V2 710 aa13.73□□□□□ -0.21
NEDD9-201ENST00000379433 NRXN3Q9Y4C0 1643 aa13.73□□□□□ -0.21
NEDD9-201ENST00000379433 ZNF592Q92610 1267 aa13.73□□□□□ -0.21
NEDD9-201ENST00000379433 MBIPQ9NS73 344 aa13.73□□□□□ -0.21
NEDD9-201ENST00000379433 SHPRHQ149N8 1683 aa13.72□□□□□ -0.21
NEDD9-201ENST00000379433 NCLP19338 710 aaKnown RBP13.72□□□□□ -0.21
NEDD9-201ENST00000379433 IL27Q8NEV9 243 aa13.72□□□□□ -0.21
NEDD9-201ENST00000379433 TMEM57Q8N5G2 664 aa13.72□□□□□ -0.21
NEDD9-201ENST00000379433 APBB1O00213 710 aa13.72□□□□□ -0.21
NEDD9-201ENST00000379433 C8orf58Q8NAV2 365 aa13.72□□□□□ -0.21
NEDD9-201ENST00000379433 PHF23Q9BUL5 403 aaPredicted RBP13.72□□□□□ -0.21
NEDD9-201ENST00000379433 CPSF1Q10570 1443 aaKnown RBP13.71□□□□□ -0.21
NEDD9-201ENST00000379433 CCDC27Q2M243 656 aa13.71□□□□□ -0.21
NEDD9-201ENST00000379433 PROSER2Q86WR7 435 aaPredicted RBP13.71□□□□□ -0.21
NEDD9-201ENST00000379433 ZNF428Q96B54 188 aa13.71□□□□□ -0.21
NEDD9-201ENST00000379433 ATP7BP35670 1465 aa13.71□□□□□ -0.21
NEDD9-201ENST00000379433 PDE3AQ14432 1141 aa13.71□□□□□ -0.21
NEDD9-201ENST00000379433 ZBTB47Q9UFB7 747 aaPredicted RBP13.71□□□□□ -0.21
NEDD9-201ENST00000379433 MAP2P11137 1827 aaKnown RBP13.71□□□□□ -0.22
NEDD9-201ENST00000379433 UBR1Q8IWV7 1749 aa13.7□□□□□ -0.22
NEDD9-201ENST00000379433 TWISTNBQ3B726 338 aaPredicted RBP13.7□□□□□ -0.22
NEDD9-201ENST00000379433 RTF1Q92541 710 aaKnown RBP13.7□□□□□ -0.22
NEDD9-201ENST00000379433 PHF8Q9UPP1 1060 aa13.7□□□□□ -0.22
NEDD9-201ENST00000379433 BACH2Q9BYV9 841 aa13.69□□□□□ -0.22
NEDD9-201ENST00000379433 PLEKHG3A1L390 1219 aa13.69□□□□□ -0.22
NEDD9-201ENST00000379433 FAM135BQ49AJ0 1406 aa13.69□□□□□ -0.22
NEDD9-201ENST00000379433 ATF7IPQ6VMQ6 1270 aa13.69□□□□□ -0.22
NEDD9-201ENST00000379433 SECISBP2LQ93073 1101 aaKnown RBP13.69□□□□□ -0.22
NEDD9-201ENST00000379433 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.69□□□□□ -0.22
NEDD9-201ENST00000379433 KDM2BQ8NHM5 1336 aa13.68□□□□□ -0.22
NEDD9-201ENST00000379433 MVPQ14764 893 aaKnown RBP13.68□□□□□ -0.22
NEDD9-201ENST00000379433 EYA1Q99502 592 aa13.68□□□□□ -0.22
NEDD9-201ENST00000379433 NOP58Q9Y2X3 529 aaKnown RBP13.68□□□□□ -0.22
NEDD9-201ENST00000379433 C3P01024 1663 aa13.67□□□□□ -0.22
NEDD9-201ENST00000379433 SLC4A10Q6U841 1118 aa13.67□□□□□ -0.22
NEDD9-201ENST00000379433 ZC3H6P61129 1189 aaKnown RBP13.67□□□□□ -0.22
NEDD9-201ENST00000379433 IQSEC2Q5JU85 1478 aa13.67□□□□□ -0.22
NEDD9-201ENST00000379433 USP6P35125 1406 aa13.67□□□□□ -0.22
NEDD9-201ENST00000379433 PNPLA6Q8IY17 1366 aa13.67□□□□□ -0.22
NEDD9-201ENST00000379433 FER1L4A9Z1Z3 1794 aa13.67□□□□□ -0.22
NEDD9-201ENST00000379433 GNAI1P63096 354 aa13.67□□□□□ -0.22
NEDD9-201ENST00000379433 LRRC59Q96AG4 307 aaKnown RBP13.67□□□□□ -0.22
NEDD9-201ENST00000379433 MTHFSDQ2M296 383 aaKnown RBP13.66□□□□□ -0.22
NEDD9-201ENST00000379433 SIRT1Q96EB6 747 aa13.66□□□□□ -0.22
NEDD9-201ENST00000379433 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.66□□□□□ -0.22
NEDD9-201ENST00000379433 LRRC7Q96NW7 1537 aa13.66□□□□□ -0.22
NEDD9-201ENST00000379433 ZNF526Q8TF50 670 aaPredicted RBP13.66□□□□□ -0.22
NEDD9-201ENST00000379433 DLC1Q96QB1 1528 aa13.66□□□□□ -0.22
NEDD9-201ENST00000379433 COL3A1P02461 1466 aaPredicted RBP13.66□□□□□ -0.22
NEDD9-201ENST00000379433 HMGB1P09429 215 aaKnown RBP13.66□□□□□ -0.22
NEDD9-201ENST00000379433 PDZRN3Q9UPQ7 1066 aa13.66□□□□□ -0.22
NEDD9-201ENST00000379433 TMED8Q6PL24 325 aaPredicted RBP13.65□□□□□ -0.22
NEDD9-201ENST00000379433 VAMP4O75379 141 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms