RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 ERCC6Q03468 1493 aa6.78□□□□□ -1.32
ATG4A-204ENST00000372246 SNPHO15079 494 aa6.78□□□□□ -1.32
ATG4A-204ENST00000372246 NASPP49321 788 aaPredicted RBP6.78□□□□□ -1.32
ATG4A-204ENST00000372246 MCTP1Q6DN14 999 aa6.78□□□□□ -1.32
ATG4A-204ENST00000372246 CAVIN1Q6NZI2 390 aaKnown RBP6.78□□□□□ -1.32
ATG4A-204ENST00000372246 AFAP1Q8N556 730 aa6.78□□□□□ -1.32
ATG4A-204ENST00000372246 ZHX1Q9UKY1 873 aaPredicted RBP6.78□□□□□ -1.32
ATG4A-204ENST00000372246 NSFL1CQ9UNZ2 370 aaKnown RBP6.78□□□□□ -1.32
ATG4A-204ENST00000372246 ANKRD45Q5TZF3 282 aa6.78□□□□□ -1.32
ATG4A-204ENST00000372246 RNF214Q8ND24 703 aa6.78□□□□□ -1.32
ATG4A-204ENST00000372246 RUNDC1Q96C34 613 aa6.78□□□□□ -1.32
ATG4A-204ENST00000372246 DDX49Q9Y6V7 483 aaKnown RBP6.78□□□□□ -1.32
ATG4A-204ENST00000372246 SYCP2Q9BX26 1530 aa6.78□□□□□ -1.32
ATG4A-204ENST00000372246 PIK3C2GO75747 1445 aa6.77□□□□□ -1.33
ATG4A-204ENST00000372246 ZKSCAN2Q63HK3 967 aa6.77□□□□□ -1.33
ATG4A-204ENST00000372246 RBSNQ9H1K0 784 aa6.77□□□□□ -1.33
ATG4A-204ENST00000372246 GRIN2AQ12879 1464 aa6.77□□□□□ -1.33
ATG4A-204ENST00000372246 AK9Q5TCS8 1911 aa6.77□□□□□ -1.33
ATG4A-204ENST00000372246 ITSN2Q9NZM3 1697 aa6.77□□□□□ -1.33
ATG4A-204ENST00000372246 MYO5CQ9NQX4 1742 aa6.77□□□□□ -1.33
ATG4A-204ENST00000372246 KIF3CO14782 793 aa6.77□□□□□ -1.33
ATG4A-204ENST00000372246 C16orf71Q8IYS4 520 aaPredicted RBP6.77□□□□□ -1.33
ATG4A-204ENST00000372246 VIRMAQ69YN4 1812 aaKnown RBP6.77□□□□□ -1.33
ATG4A-204ENST00000372246 NSD3Q9BZ95 1437 aa6.76□□□□□ -1.33
ATG4A-204ENST00000372246 DDX11L8A8MPP1 907 aa6.76□□□□□ -1.33
ATG4A-204ENST00000372246 RAB3GAP1Q15042 981 aa6.76□□□□□ -1.33
ATG4A-204ENST00000372246 NOL8Q76FK4 1167 aaKnown RBP6.76□□□□□ -1.33
ATG4A-204ENST00000372246 C17orf53Q8N3J3 647 aaPredicted RBP6.76□□□□□ -1.33
ATG4A-204ENST00000372246 ZGPATQ8N5A5 531 aaKnown RBP6.76□□□□□ -1.33
ATG4A-204ENST00000372246 SAMD9LQ8IVG5 1584 aa6.76□□□□□ -1.33
ATG4A-204ENST00000372246 UGGT1Q9NYU2 1555 aa6.76□□□□□ -1.33
ATG4A-204ENST00000372246 SYNMO15061 1565 aa6.76□□□□□ -1.33
ATG4A-204ENST00000372246 PRIM1P49642 420 aaKnown RBP6.76□□□□□ -1.33
ATG4A-204ENST00000372246 TBC1D9Q6ZT07 1266 aa6.76□□□□□ -1.33
ATG4A-204ENST00000372246 ZNF830Q96NB3 372 aaPredicted RBP6.76□□□□□ -1.33
ATG4A-204ENST00000372246 PRDM4Q9UKN5 801 aa6.76□□□□□ -1.33
ATG4A-204ENST00000372246 CCDC141Q6ZP82 1450 aa6.75□□□□□ -1.33
ATG4A-204ENST00000372246 OTUD7AQ8TE49 926 aaPredicted RBP6.75□□□□□ -1.33
ATG4A-204ENST00000372246 GGNBP2Q9H3C7 697 aa6.75□□□□□ -1.33
ATG4A-204ENST00000372246 TULP1O00294 542 aaPredicted RBP6.75□□□□□ -1.33
ATG4A-204ENST00000372246 GTPBP6O43824 516 aaPredicted RBP6.75□□□□□ -1.33
ATG4A-204ENST00000372246 MYOM1P52179 1685 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 UQCRHLA0A096LP55 91 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 IGSF3O75054 1194 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 PRPF40AO75400 957 aaKnown RBP6.74□□□□□ -1.33
ATG4A-204ENST00000372246 BAG4O95429 457 aaKnown RBP6.74□□□□□ -1.33
ATG4A-204ENST00000372246 UQCRHP07919 91 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 ATF7IPQ6VMQ6 1270 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 ZSCAN30Q86W11 494 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 CHD1LQ86WJ1 897 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 TSPYL6Q8N831 410 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 ERVK-7P63135 1459 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 ABCC2Q92887 1545 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 MSNP26038 577 aaKnown RBP6.74□□□□□ -1.33
ATG4A-204ENST00000372246 RSPH4AQ5TD94 716 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 SMC5Q8IY18 1101 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 ZBTB40Q9NUA8 1239 aa6.74□□□□□ -1.33
ATG4A-204ENST00000372246 SCAF11Q99590 1463 aaKnown RBP6.73□□□□□ -1.33
ATG4A-204ENST00000372246 C2orf72A6NCS6 295 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 RBM25P49756 843 aaKnown RBP6.73□□□□□ -1.33
ATG4A-204ENST00000372246 NUCB1Q02818 461 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 ZSCAN23Q3MJ62 389 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 CDCA8Q53HL2 280 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 SIRT2Q8IXJ6 389 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 GPT2Q8TD30 523 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 GBP4Q96PP9 640 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 PDCL3Q9H2J4 239 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 GDPD2Q9HCC8 539 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 SYNJ2O15056 1496 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 SHANK2Q9UPX8 1470 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 ARHGAP5Q13017 1502 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 CLASP1Q7Z460 1538 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 SYCE3A1L190 88 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 K7ELQ4 463 aaPredicted RBP6.73□□□□□ -1.33
ATG4A-204ENST00000372246 SMARCA5O60264 1052 aaPredicted RBP6.73□□□□□ -1.33
ATG4A-204ENST00000372246 OFD1O75665 1012 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 TSHZ3Q63HK5 1081 aa6.73□□□□□ -1.33
ATG4A-204ENST00000372246 KIF3BO15066 747 aa6.72□□□□□ -1.33
ATG4A-204ENST00000372246 GSPT1P15170 499 aaKnown RBP6.72□□□□□ -1.33
ATG4A-204ENST00000372246 MARVELD3Q96A59 401 aa6.72□□□□□ -1.33
ATG4A-204ENST00000372246 STK26Q9P289 416 aa6.72□□□□□ -1.33
ATG4A-204ENST00000372246 NCOA3Q9Y6Q9 1424 aa6.72□□□□□ -1.33
ATG4A-204ENST00000372246 TMEM63CQ9P1W3 806 aa6.72□□□□□ -1.33
ATG4A-204ENST00000372246 CD109Q6YHK3 1445 aa6.71□□□□□ -1.33
ATG4A-204ENST00000372246 MADDQ8WXG6 1647 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 TPM2P07951 284 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 HMOX1P09601 288 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 BRD2P25440 801 aaKnown RBP6.71□□□□□ -1.34
ATG4A-204ENST00000372246 TMPOP42166 694 aaKnown RBP6.71□□□□□ -1.34
ATG4A-204ENST00000372246 CCDC173Q0VFZ6 552 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 HDAC1Q13547 482 aaPredicted RBP6.71□□□□□ -1.34
ATG4A-204ENST00000372246 WDR63Q8IWG1 891 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 PPP1R9BQ96SB3 815 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 LMBRD1Q9NUN5 540 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 ZDHHC9Q9Y397 364 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 TRAPPC8Q9Y2L5 1435 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 ABCA8O94911 1581 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 KRT24Q2M2I5 525 aa6.71□□□□□ -1.34
ATG4A-204ENST00000372246 LARP6Q9BRS8 491 aaKnown RBP6.71□□□□□ -1.34
ATG4A-204ENST00000372246 RYDENQ9NUL5 291 aaKnown RBP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms