RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 DDX54Q8TDD1 881 aaKnown RBP14.02□□□□□ -0.17
PTPN1-201ENST00000371621 SNX21Q969T3 373 aa14.02□□□□□ -0.17
PTPN1-201ENST00000371621 SDF4Q9BRK5 362 aa14.02□□□□□ -0.17
PTPN1-201ENST00000371621 TMEM51Q9NW97 253 aa14.02□□□□□ -0.17
PTPN1-201ENST00000371621 AXDND1Q5T1B0 1012 aaPredicted RBP14.02□□□□□ -0.17
PTPN1-201ENST00000371621 NEK11Q8NG66 645 aa14.02□□□□□ -0.17
PTPN1-201ENST00000371621 LMBRD1Q9NUN5 540 aa14.02□□□□□ -0.17
PTPN1-201ENST00000371621 DHX29Q7Z478 1369 aaKnown RBP14.02□□□□□ -0.17
PTPN1-201ENST00000371621 FYCO1Q9BQS8 1478 aa14.02□□□□□ -0.17
PTPN1-201ENST00000371621 SSH1Q8WYL5 1049 aa14.01□□□□□ -0.17
PTPN1-201ENST00000371621 CCDC34Q96HJ3 373 aa14.01□□□□□ -0.17
PTPN1-201ENST00000371621 MIA2Q96PC5 1412 aa14.01□□□□□ -0.17
PTPN1-201ENST00000371621 TRIM27P14373 513 aa14□□□□□ -0.17
PTPN1-201ENST00000371621 NGEFQ8N5V2 710 aa14□□□□□ -0.17
PTPN1-201ENST00000371621 NUP62CLQ9H1M0 184 aa14□□□□□ -0.17
PTPN1-201ENST00000371621 NKTRP30414 1462 aaKnown RBP14□□□□□ -0.17
PTPN1-201ENST00000371621 SMARCA5O60264 1052 aaPredicted RBP14□□□□□ -0.17
PTPN1-201ENST00000371621 NAA30Q147X3 362 aaPredicted RBP14□□□□□ -0.17
PTPN1-201ENST00000371621 USP48Q86UV5 1035 aa14□□□□□ -0.17
PTPN1-201ENST00000371621 CD2BP2O95400 341 aaKnown RBP14□□□□□ -0.17
PTPN1-201ENST00000371621 ELF2Q15723 593 aa13.99□□□□□ -0.17
PTPN1-201ENST00000371621 ZNF608Q9ULD9 1512 aaPredicted RBP13.99□□□□□ -0.17
PTPN1-201ENST00000371621 ERC2O15083 957 aa13.99□□□□□ -0.17
PTPN1-201ENST00000371621 ANKRD30BQ9BXX2 1392 aa13.99□□□□□ -0.17
PTPN1-201ENST00000371621 FAM193AP78312 1265 aa13.99□□□□□ -0.17
PTPN1-201ENST00000371621 BANK1Q8NDB2 785 aa13.99□□□□□ -0.17
PTPN1-201ENST00000371621 DMRT2Q9Y5R5 561 aa13.99□□□□□ -0.17
PTPN1-201ENST00000371621 MAP3K11Q16584 847 aa13.99□□□□□ -0.17
PTPN1-201ENST00000371621 ZNF397Q8NF99 534 aaPredicted RBP13.99□□□□□ -0.17
PTPN1-201ENST00000371621 GCC1Q96CN9 775 aa13.99□□□□□ -0.17
PTPN1-201ENST00000371621 GIMAP7Q8NHV1 300 aa13.98□□□□□ -0.17
PTPN1-201ENST00000371621 PHACTR2O75167 634 aa13.98□□□□□ -0.17
PTPN1-201ENST00000371621 PAXBP1Q9Y5B6 917 aa13.98□□□□□ -0.17
PTPN1-201ENST00000371621 DNAAF4Q8WXU2 420 aa13.98□□□□□ -0.17
PTPN1-201ENST00000371621 PLCD4Q9BRC7 762 aa13.98□□□□□ -0.17
PTPN1-201ENST00000371621 CNPY2Q9Y2B0 182 aa13.98□□□□□ -0.17
PTPN1-201ENST00000371621 EFCAB5A4FU69 1503 aa13.97□□□□□ -0.17
PTPN1-201ENST00000371621 MAP4K4O95819 1239 aaPredicted RBP13.97□□□□□ -0.17
PTPN1-201ENST00000371621 MCM6Q14566 821 aa13.97□□□□□ -0.17
PTPN1-201ENST00000371621 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.97□□□□□ -0.17
PTPN1-201ENST00000371621 MRC2Q9UBG0 1479 aa13.97□□□□□ -0.17
PTPN1-201ENST00000371621 NECTIN2Q92692 538 aa13.97□□□□□ -0.17
PTPN1-201ENST00000371621 PTPRKQ15262 1439 aa13.97□□□□□ -0.17
PTPN1-201ENST00000371621 BMP2KLQ5H9B9 411 aa13.97□□□□□ -0.17
PTPN1-201ENST00000371621 TFIP11Q9UBB9 837 aaKnown RBP13.97□□□□□ -0.17
PTPN1-201ENST00000371621 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.97□□□□□ -0.17
PTPN1-201ENST00000371621 PES1O00541 588 aaKnown RBP13.96□□□□□ -0.17
PTPN1-201ENST00000371621 ARHGAP29Q52LW3 1261 aa13.96□□□□□ -0.17
PTPN1-201ENST00000371621 NUTM2DQ5VT03 806 aaPredicted RBP13.96□□□□□ -0.17
PTPN1-201ENST00000371621 CCDC73Q6ZRK6 1079 aa13.96□□□□□ -0.17
PTPN1-201ENST00000371621 KLHL34Q8N239 644 aa13.96□□□□□ -0.17
PTPN1-201ENST00000371621 SECISBP2LQ93073 1101 aaKnown RBP13.96□□□□□ -0.17
PTPN1-201ENST00000371621 TMX3Q96JJ7 454 aa13.96□□□□□ -0.17
PTPN1-201ENST00000371621 KIF21AQ7Z4S6 1674 aa13.96□□□□□ -0.17
PTPN1-201ENST00000371621 TDO2P48775 406 aa13.96□□□□□ -0.17
PTPN1-201ENST00000371621 TXLNBQ8N3L3 684 aa13.96□□□□□ -0.17
PTPN1-201ENST00000371621 GPT2Q8TD30 523 aa13.96□□□□□ -0.17
PTPN1-201ENST00000371621 JPH4Q96JJ6 628 aa13.96□□□□□ -0.17
PTPN1-201ENST00000371621 CUL7Q14999 1698 aa13.96□□□□□ -0.17
PTPN1-201ENST00000371621 KDM4AO75164 1064 aa13.96□□□□□ -0.18
PTPN1-201ENST00000371621 MCM2P49736 904 aa13.96□□□□□ -0.18
PTPN1-201ENST00000371621 E2F4Q16254 413 aa13.96□□□□□ -0.18
PTPN1-201ENST00000371621 SKILP12757 684 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 CAPN2P17655 700 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 CALRP27797 417 aaKnown RBP13.95□□□□□ -0.18
PTPN1-201ENST00000371621 LRMPQ12912 555 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 STK3Q13188 491 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 CT47A1Q5JQC4 288 aaPredicted RBP13.95□□□□□ -0.18
PTPN1-201ENST00000371621 GRIN2BQ13224 1484 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 SMTNL1A8MU46 457 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 GADD45BO75293 160 aaPredicted RBP13.95□□□□□ -0.18
PTPN1-201ENST00000371621 TTC31Q49AM3 519 aaPredicted RBP13.95□□□□□ -0.18
PTPN1-201ENST00000371621 LUZP1Q86V48 1076 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 TULP1O00294 542 aaPredicted RBP13.95□□□□□ -0.18
PTPN1-201ENST00000371621 ZNF165P49910 485 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 UVSSAQ2YD98 709 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 TSHZ3Q63HK5 1081 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 PYCARDQ9ULZ3 195 aa13.95□□□□□ -0.18
PTPN1-201ENST00000371621 HMOX1P09601 288 aa13.94□□□□□ -0.18
PTPN1-201ENST00000371621 MICALL1Q8N3F8 863 aa13.94□□□□□ -0.18
PTPN1-201ENST00000371621 LOC102724159A0A0B4J2E5 919 aa13.94□□□□□ -0.18
PTPN1-201ENST00000371621 PWP2Q15269 919 aaKnown RBP13.94□□□□□ -0.18
PTPN1-201ENST00000371621 LARP1BQ659C4 914 aaKnown RBP13.94□□□□□ -0.18
PTPN1-201ENST00000371621 CCDC9Q9Y3X0 531 aaKnown RBP13.94□□□□□ -0.18
PTPN1-201ENST00000371621 HNRNPH2P55795 449 aaKnown RBP13.94□□□□□ -0.18
PTPN1-201ENST00000371621 KRT85P78386 507 aa13.94□□□□□ -0.18
PTPN1-201ENST00000371621 SLU7O95391 586 aaKnown RBP13.93□□□□□ -0.18
PTPN1-201ENST00000371621 RSPH4AQ5TD94 716 aa13.93□□□□□ -0.18
PTPN1-201ENST00000371621 ZNF215Q9UL58 517 aaPredicted RBP13.93□□□□□ -0.18
PTPN1-201ENST00000371621 NSFL1CQ9UNZ2 370 aaKnown RBP13.93□□□□□ -0.18
PTPN1-201ENST00000371621 SNW1Q13573 536 aaKnown RBP13.93□□□□□ -0.18
PTPN1-201ENST00000371621 C16orf71Q8IYS4 520 aaPredicted RBP13.93□□□□□ -0.18
PTPN1-201ENST00000371621 NINLQ9Y2I6 1382 aa13.92□□□□□ -0.18
PTPN1-201ENST00000371621 KINO60870 393 aaKnown RBP13.92□□□□□ -0.18
PTPN1-201ENST00000371621 ZKSCAN1P17029 563 aaPredicted RBP13.92□□□□□ -0.18
PTPN1-201ENST00000371621 CCDC83Q8IWF9 413 aa13.92□□□□□ -0.18
PTPN1-201ENST00000371621 ACBD3Q9H3P7 528 aa13.92□□□□□ -0.18
PTPN1-201ENST00000371621 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.92□□□□□ -0.181e-6■■■□□ 14.8
PTPN1-201ENST00000371621 MX1P20591 662 aa13.92□□□□□ -0.18
PTPN1-201ENST00000371621 SPATA32Q96LK8 384 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms