RNA–Protein interactions for RNA: ENST00000369406.7

HMGCS2-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS2, Length 2,428 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2-201ENST00000369406 MED1Q15648 1581 aaPredicted RBP18.6■□□□□ 0.57
HMGCS2-201ENST00000369406 SLIT3O75094 1523 aa18.59■□□□□ 0.57
HMGCS2-201ENST00000369406 CADPS2Q86UW7 1296 aa18.59■□□□□ 0.57
HMGCS2-201ENST00000369406 TRMT2AQ8IZ69 625 aaKnown RBP18.59■□□□□ 0.57
HMGCS2-201ENST00000369406 PXDNQ92626 1479 aa18.58■□□□□ 0.57
HMGCS2-201ENST00000369406 RNF123Q5XPI4 1314 aa18.58■□□□□ 0.57
HMGCS2-201ENST00000369406 RGPD5Q99666 1765 aa18.58■□□□□ 0.57
HMGCS2-201ENST00000369406 FLT4P35916 1363 aa18.58■□□□□ 0.56
HMGCS2-201ENST00000369406 CRYBG1Q9Y4K1 1723 aa18.58■□□□□ 0.56
HMGCS2-201ENST00000369406 TMPOP42166 694 aaKnown RBP18.58■□□□□ 0.56
HMGCS2-201ENST00000369406 FCHSD2O94868 740 aa18.57■□□□□ 0.56
HMGCS2-201ENST00000369406 TRIM35Q9UPQ4 493 aa18.57■□□□□ 0.56
HMGCS2-201ENST00000369406 PHRF1Q9P1Y6 1649 aaKnown RBP18.56■□□□□ 0.56
HMGCS2-201ENST00000369406 HOXC9P31274 260 aa18.55■□□□□ 0.56
HMGCS2-201ENST00000369406 BRINP3Q76B58 766 aa18.55■□□□□ 0.56
HMGCS2-201ENST00000369406 LMOD2Q6P5Q4 547 aa18.54■□□□□ 0.56
HMGCS2-201ENST00000369406 RCAN3Q9UKA8 241 aa18.54■□□□□ 0.56
HMGCS2-201ENST00000369406 MAPK8IP3Q9UPT6 1336 aa18.54■□□□□ 0.56
HMGCS2-201ENST00000369406 AMPHP49418 695 aa18.54■□□□□ 0.56
HMGCS2-201ENST00000369406 USP19O94966 1318 aa18.54■□□□□ 0.56
HMGCS2-201ENST00000369406 NEFLP07196 543 aa18.53■□□□□ 0.56
HMGCS2-201ENST00000369406 CCDC27Q2M243 656 aa18.53■□□□□ 0.56
HMGCS2-201ENST00000369406 SULT6B1Q6IMI4 303 aa18.53■□□□□ 0.56
HMGCS2-201ENST00000369406 NGEFQ8N5V2 710 aa18.52■□□□□ 0.56
HMGCS2-201ENST00000369406 LTBP4Q8N2S1 1624 aa18.52■□□□□ 0.56
HMGCS2-201ENST00000369406 RIPK4P57078 832 aa18.51■□□□□ 0.55
HMGCS2-201ENST00000369406 SLAIN2Q9P270 581 aa18.51■□□□□ 0.55
HMGCS2-201ENST00000369406 E9PSI1 815 aa18.5■□□□□ 0.55
HMGCS2-201ENST00000369406 GCP02774 474 aa18.5■□□□□ 0.55
HMGCS2-201ENST00000369406 EYA1Q99502 592 aa18.5■□□□□ 0.55
HMGCS2-201ENST00000369406 NHSL1Q5SYE7 1610 aa18.5■□□□□ 0.55
HMGCS2-201ENST00000369406 TNS3Q68CZ2 1445 aa18.49■□□□□ 0.55
HMGCS2-201ENST00000369406 ARHGEF10O15013 1369 aa18.49■□□□□ 0.55
HMGCS2-201ENST00000369406 ZBTB7CA1YPR0 619 aa18.49■□□□□ 0.55
HMGCS2-201ENST00000369406 LTV1Q96GA3 475 aaPredicted RBP18.49■□□□□ 0.55
HMGCS2-201ENST00000369406 KIF24Q5T7B8 1368 aa18.49■□□□□ 0.55
HMGCS2-201ENST00000369406 NPHP3Q7Z494 1330 aa18.49■□□□□ 0.55
HMGCS2-201ENST00000369406 IGSF1Q8N6C5 1336 aa18.49■□□□□ 0.55
HMGCS2-201ENST00000369406 WDR63Q8IWG1 891 aa18.49■□□□□ 0.55
HMGCS2-201ENST00000369406 THUMPD2Q9BTF0 503 aaKnown RBP18.49■□□□□ 0.55
HMGCS2-201ENST00000369406 COL18A1P39060 1754 aa18.48■□□□□ 0.55
HMGCS2-201ENST00000369406 RTL1A6NKG5 1358 aa18.48■□□□□ 0.55
HMGCS2-201ENST00000369406 NFE2L2Q16236 605 aa18.48■□□□□ 0.55
HMGCS2-201ENST00000369406 CABLES1Q8TDN4 633 aa18.48■□□□□ 0.55
HMGCS2-201ENST00000369406 RRP1P56182 461 aaKnown RBP18.48■□□□□ 0.55
HMGCS2-201ENST00000369406 NCBP3Q53F19 620 aaKnown RBP18.48■□□□□ 0.55
HMGCS2-201ENST00000369406 KDRP35968 1356 aa18.47■□□□□ 0.55
HMGCS2-201ENST00000369406 PLIN1O60240 522 aa18.47■□□□□ 0.55
HMGCS2-201ENST00000369406 ABCA3Q99758 1704 aa18.47■□□□□ 0.55
HMGCS2-201ENST00000369406 ARHGEF25Q86VW2 580 aa18.47■□□□□ 0.55
HMGCS2-201ENST00000369406 IP6K1Q92551 441 aa18.47■□□□□ 0.55
HMGCS2-201ENST00000369406 TSR2Q969E8 191 aaKnown RBP18.46■□□□□ 0.55
HMGCS2-201ENST00000369406 SPATA31A3Q5VYP0 1347 aa18.46■□□□□ 0.55
HMGCS2-201ENST00000369406 FAM83GA6ND36 823 aa18.45■□□□□ 0.54
HMGCS2-201ENST00000369406 USHBP1Q8N6Y0 703 aa18.45■□□□□ 0.54
HMGCS2-201ENST00000369406 KCNH5Q8NCM2 988 aa18.45■□□□□ 0.54
HMGCS2-201ENST00000369406 PNNQ9H307 717 aaKnown RBP18.45■□□□□ 0.54
HMGCS2-201ENST00000369406 AXIN2Q9Y2T1 843 aa18.45■□□□□ 0.54
HMGCS2-201ENST00000369406 ZC3H6P61129 1189 aaKnown RBP18.43■□□□□ 0.54
HMGCS2-201ENST00000369406 FANCIQ9NVI1 1328 aa18.43■□□□□ 0.54
HMGCS2-201ENST00000369406 ROBO1Q9Y6N7 1651 aa18.43■□□□□ 0.54
HMGCS2-201ENST00000369406 DCTN1Q14203 1278 aa18.43■□□□□ 0.54
HMGCS2-201ENST00000369406 SOS2Q07890 1332 aaPredicted RBP18.43■□□□□ 0.54
HMGCS2-201ENST00000369406 CAMTA1Q9Y6Y1 1673 aa18.43■□□□□ 0.54
HMGCS2-201ENST00000369406 LRRC59Q96AG4 307 aaKnown RBP18.42■□□□□ 0.54
HMGCS2-201ENST00000369406 NBPF6Q5VWK0 638 aa18.42■□□□□ 0.54
HMGCS2-201ENST00000369406 NBPF4Q96M43 638 aa18.42■□□□□ 0.54
HMGCS2-201ENST00000369406 BCAR3O75815 825 aa18.41■□□□□ 0.54
HMGCS2-201ENST00000369406 C20orf194Q5TEA3 1177 aa18.41■□□□□ 0.54
HMGCS2-201ENST00000369406 MTHFSDQ2M296 383 aaKnown RBP18.4■□□□□ 0.54
HMGCS2-201ENST00000369406 LMO7Q8WWI1 1683 aa18.39■□□□□ 0.54
HMGCS2-201ENST00000369406 VIRMAQ69YN4 1812 aaKnown RBP18.38■□□□□ 0.53
HMGCS2-201ENST00000369406 NEFMP07197 916 aa18.38■□□□□ 0.53
HMGCS2-201ENST00000369406 IL16Q14005 1332 aa18.38■□□□□ 0.53
HMGCS2-201ENST00000369406 FAM208AQ9UK61 1670 aaKnown RBP18.37■□□□□ 0.53
HMGCS2-201ENST00000369406 NCAPD2Q15021 1401 aa18.37■□□□□ 0.53
HMGCS2-201ENST00000369406 EXOSC9Q06265 439 aaKnown RBP18.37■□□□□ 0.53
HMGCS2-201ENST00000369406 MCM10Q7L590 875 aa18.37■□□□□ 0.53
HMGCS2-201ENST00000369406 CHRNA2Q15822 529 aa18.36■□□□□ 0.53
HMGCS2-201ENST00000369406 ANKRD24Q8TF21 1146 aa18.36■□□□□ 0.53
HMGCS2-201ENST00000369406 MYH16Q9H6N6 1097 aa18.36■□□□□ 0.53
HMGCS2-201ENST00000369406 LRRC37A3O60309 1634 aa18.36■□□□□ 0.53
HMGCS2-201ENST00000369406 KIAA0232Q92628 1395 aa18.36■□□□□ 0.53
HMGCS2-201ENST00000369406 EXOC6Q8TAG9 804 aa18.35■□□□□ 0.53
HMGCS2-201ENST00000369406 ZNF853P0CG23 659 aa18.34■□□□□ 0.53
HMGCS2-201ENST00000369406 LAS1LQ9Y4W2 734 aaKnown RBP18.34■□□□□ 0.53
HMGCS2-201ENST00000369406 RARSP54136 660 aaKnown RBP18.33■□□□□ 0.53
HMGCS2-201ENST00000369406 BCL2L13Q9BXK5 485 aa18.33■□□□□ 0.53
HMGCS2-201ENST00000369406 ERBB3P21860 1342 aa18.33■□□□□ 0.52
HMGCS2-201ENST00000369406 CRB1P82279 1406 aa18.32■□□□□ 0.52
HMGCS2-201ENST00000369406 B4GALNT3Q6L9W6 998 aa18.32■□□□□ 0.52
HMGCS2-201ENST00000369406 MBIPQ9NS73 344 aa18.32■□□□□ 0.52
HMGCS2-201ENST00000369406 AHDC1Q5TGY3 1603 aaPredicted RBP18.32■□□□□ 0.52
HMGCS2-201ENST00000369406 ERICH6BQ5W0A0 696 aa18.31■□□□□ 0.52
HMGCS2-201ENST00000369406 CRBNQ96SW2 442 aa18.31■□□□□ 0.52
HMGCS2-201ENST00000369406 PPP4R2Q9NY27 417 aa18.31■□□□□ 0.52
HMGCS2-201ENST00000369406 TNNQ9UQP3 1299 aa18.31■□□□□ 0.52
HMGCS2-201ENST00000369406 CPDO75976 1380 aa18.31■□□□□ 0.52
HMGCS2-201ENST00000369406 TSPYL6Q8N831 410 aa18.3■□□□□ 0.52
HMGCS2-201ENST00000369406 IFT57Q9NWB7 429 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms