RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 POLA1P09884 1462 aaPredicted RBP8.62□□□□□ -1.03
SYNE1-208ENST00000367256 KIF6Q6ZMV9 814 aa8.62□□□□□ -1.03
SYNE1-208ENST00000367256 DESP17661 470 aa8.62□□□□□ -1.03
SYNE1-208ENST00000367256 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.62□□□□□ -1.03
SYNE1-208ENST00000367256 GBP3Q9H0R5 595 aa8.62□□□□□ -1.03
SYNE1-208ENST00000367256 PLEKHH1Q9ULM0 1364 aa8.62□□□□□ -1.03
SYNE1-208ENST00000367256 NEK4P51957 841 aa8.62□□□□□ -1.03
SYNE1-208ENST00000367256 TTC39AQ5SRH9 613 aa8.62□□□□□ -1.03
SYNE1-208ENST00000367256 CCDC91Q7Z6B0 441 aa8.62□□□□□ -1.03
SYNE1-208ENST00000367256 STK11IPQ8N1F8 1099 aa8.62□□□□□ -1.03
SYNE1-208ENST00000367256 PDCL3Q9H2J4 239 aa8.62□□□□□ -1.03
SYNE1-208ENST00000367256 TRIM22Q8IYM9 498 aa8.61□□□□□ -1.03
SYNE1-208ENST00000367256 UBE2Q2Q8WVN8 375 aa8.61□□□□□ -1.03
SYNE1-208ENST00000367256 GNL3LQ9NVN8 582 aaKnown RBP8.61□□□□□ -1.03
SYNE1-208ENST00000367256 CASKIN1Q8WXD9 1431 aa8.61□□□□□ -1.03
SYNE1-208ENST00000367256 HMOX1P09601 288 aa8.61□□□□□ -1.03
SYNE1-208ENST00000367256 ZNF428Q96B54 188 aa8.61□□□□□ -1.03
SYNE1-208ENST00000367256 MCM3P25205 808 aa8.61□□□□□ -1.03
SYNE1-208ENST00000367256 FAM177A1Q8N128 213 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-208ENST00000367256 SRCIN1Q9C0H9 1055 aa8.61□□□□□ -1.03
SYNE1-208ENST00000367256 K7ELQ4 463 aaPredicted RBP8.61□□□□□ -1.03
SYNE1-208ENST00000367256 KRT85P78386 507 aa8.61□□□□□ -1.03
SYNE1-208ENST00000367256 JAKMIP3Q5VZ66 844 aa8.61□□□□□ -1.03
SYNE1-208ENST00000367256 LRRFIP2Q9Y608 721 aaKnown RBP8.61□□□□□ -1.03
SYNE1-208ENST00000367256 HFM1A2PYH4 1435 aa8.61□□□□□ -1.03
SYNE1-208ENST00000367256 MAPK8IP2Q13387 824 aaPredicted RBP8.6□□□□□ -1.03
SYNE1-208ENST00000367256 CALCOCO1Q9P1Z2 691 aa8.6□□□□□ -1.03
SYNE1-208ENST00000367256 EHBP1L1Q8N3D4 1523 aa8.6□□□□□ -1.03
SYNE1-208ENST00000367256 CYP46A1Q9Y6A2 500 aa8.6□□□□□ -1.03
SYNE1-208ENST00000367256 MCM4P33991 863 aa8.6□□□□□ -1.03
SYNE1-208ENST00000367256 KIAA1328Q86T90 577 aa8.6□□□□□ -1.03
SYNE1-208ENST00000367256 CCDC69A6NI79 296 aa8.6□□□□□ -1.03
SYNE1-208ENST00000367256 NEBLO76041 1014 aa8.6□□□□□ -1.03
SYNE1-208ENST00000367256 CEP57L1Q8IYX8 460 aa8.6□□□□□ -1.03
SYNE1-208ENST00000367256 CADPSQ9ULU8 1353 aa8.59□□□□□ -1.03
SYNE1-208ENST00000367256 CDKL5O76039 1030 aa8.59□□□□□ -1.03
SYNE1-208ENST00000367256 MAP9Q49MG5 647 aa8.59□□□□□ -1.03
SYNE1-208ENST00000367256 MATR3P43243 847 aaKnown RBP eCLIP8.59□□□□□ -1.03
SYNE1-208ENST00000367256 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.59□□□□□ -1.03
SYNE1-208ENST00000367256 ARHGAP5Q13017 1502 aa8.59□□□□□ -1.03
SYNE1-208ENST00000367256 SHTN1A0MZ66 631 aa8.59□□□□□ -1.03
SYNE1-208ENST00000367256 STK3Q13188 491 aa8.59□□□□□ -1.03
SYNE1-208ENST00000367256 ZHX3Q9H4I2 956 aa8.59□□□□□ -1.03
SYNE1-208ENST00000367256 CCDC148Q8NFR7 591 aa8.59□□□□□ -1.03
SYNE1-208ENST00000367256 RAPGEF4Q8WZA2 1011 aa8.59□□□□□ -1.03
SYNE1-208ENST00000367256 CFAP45Q9UL16 551 aa8.59□□□□□ -1.03
SYNE1-208ENST00000367256 ATP2B2Q01814 1243 aa8.59□□□□□ -1.04
SYNE1-208ENST00000367256 ZSCAN31Q96LW9 406 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-208ENST00000367256 TRIM21P19474 475 aaKnown RBP8.58□□□□□ -1.04
SYNE1-208ENST00000367256 CCDC30Q5VVM6 783 aa8.58□□□□□ -1.04
SYNE1-208ENST00000367256 TMCO3Q6UWJ1 677 aa8.58□□□□□ -1.04
SYNE1-208ENST00000367256 DHX29Q7Z478 1369 aaKnown RBP8.58□□□□□ -1.04
SYNE1-208ENST00000367256 NEMFO60524 1076 aa8.58□□□□□ -1.04
SYNE1-208ENST00000367256 CAVIN2O95810 425 aa8.58□□□□□ -1.04
SYNE1-208ENST00000367256 TAF4BQ92750 862 aa8.58□□□□□ -1.04
SYNE1-208ENST00000367256 CEP63Q96MT8 703 aa8.58□□□□□ -1.04
SYNE1-208ENST00000367256 TDRD9Q8NDG6 1382 aaKnown RBP8.58□□□□□ -1.04
SYNE1-208ENST00000367256 DDX11Q96FC9 970 aa8.58□□□□□ -1.04
SYNE1-208ENST00000367256 SPATA32Q96LK8 384 aa8.58□□□□□ -1.04
SYNE1-208ENST00000367256 NACAP1Q9BZK3 213 aa8.58□□□□□ -1.04
SYNE1-208ENST00000367256 EPB41L2O43491 1005 aaKnown RBP8.57□□□□□ -1.04
SYNE1-208ENST00000367256 WDR63Q8IWG1 891 aa8.57□□□□□ -1.04
SYNE1-208ENST00000367256 CCDC97Q96F63 343 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-208ENST00000367256 ARHGAP29Q52LW3 1261 aa8.57□□□□□ -1.04
SYNE1-208ENST00000367256 HECW1Q76N89 1606 aa8.57□□□□□ -1.04
SYNE1-208ENST00000367256 GOLGA6L10A0A0M3HER8 536 aa8.57□□□□□ -1.04
SYNE1-208ENST00000367256 SSR1P43307 286 aaKnown RBP8.57□□□□□ -1.04
SYNE1-208ENST00000367256 NLRP2Q9NX02 1062 aa8.57□□□□□ -1.04
SYNE1-208ENST00000367256 NOL7Q9UMY1 257 aaKnown RBP8.57□□□□□ -1.04
SYNE1-208ENST00000367256 NF2P35240 595 aa8.57□□□□□ -1.04
SYNE1-208ENST00000367256 ZNF397Q8NF99 534 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-208ENST00000367256 SMTNL1A8MU46 457 aa8.57□□□□□ -1.04
SYNE1-208ENST00000367256 CGNQ9P2M7 1197 aaKnown RBP8.57□□□□□ -1.04
SYNE1-208ENST00000367256 ANKRD50Q9ULJ7 1429 aa8.57□□□□□ -1.04
SYNE1-208ENST00000367256 STAMBPO95630 424 aa8.57□□□□□ -1.04
SYNE1-208ENST00000367256 CCT4P50991 539 aaKnown RBP8.56□□□□□ -1.04
SYNE1-208ENST00000367256 CCDC158Q5M9N0 1113 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 C1orf115Q9H7X2 142 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 POTEB2H3BUK9 544 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 PPP6R1Q9UPN7 881 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 SURF6O75683 361 aaKnown RBP8.56□□□□□ -1.04
SYNE1-208ENST00000367256 CCDC57Q2TAC2 916 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 UPF3BQ9BZI7 483 aaKnown RBP8.56□□□□□ -1.04
SYNE1-208ENST00000367256 PDZRN3Q9UPQ7 1066 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 KRT32Q14532 448 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 UBXN4Q92575 508 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 CRACR2AQ9BSW2 395 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 GNAI2P04899 355 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 PPP1R12BO60237 982 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-208ENST00000367256 POTEJP0CG39 1038 aa8.56□□□□□ -1.04
SYNE1-208ENST00000367256 MAP2K1Q02750 393 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-208ENST00000367256 AKNAQ7Z591 1439 aa8.55□□□□□ -1.04
SYNE1-208ENST00000367256 NCOA2Q15596 1464 aa8.55□□□□□ -1.04
SYNE1-208ENST00000367256 MPNDQ8N594 471 aa8.55□□□□□ -1.04
SYNE1-208ENST00000367256 NUP133Q8WUM0 1156 aa8.55□□□□□ -1.04
SYNE1-208ENST00000367256 CNNM1Q9NRU3 951 aa8.55□□□□□ -1.04
SYNE1-208ENST00000367256 DYNC1I1O14576 645 aa8.55□□□□□ -1.04
SYNE1-208ENST00000367256 ZSCAN12O43309 604 aa8.55□□□□□ -1.04
SYNE1-208ENST00000367256 EIF5P55010 431 aaKnown RBP8.55□□□□□ -1.04
SYNE1-208ENST00000367256 ANAPC15P60006 121 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms