RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 RUNDC1Q96C34 613 aa17.24■□□□□ 0.35
SQSTM1-201ENST00000360718 PLEKHF1Q96S99 279 aa17.24■□□□□ 0.35
SQSTM1-201ENST00000360718 FLT4P35916 1363 aa17.24■□□□□ 0.35
SQSTM1-201ENST00000360718 NHSL1Q5SYE7 1610 aa17.24■□□□□ 0.35
SQSTM1-201ENST00000360718 MSH5O43196 834 aa17.24■□□□□ 0.35
SQSTM1-201ENST00000360718 NGEFQ8N5V2 710 aa17.24■□□□□ 0.35
SQSTM1-201ENST00000360718 PNNQ9H307 717 aaKnown RBP17.24■□□□□ 0.35
SQSTM1-201ENST00000360718 RGPD1P0DJD0 1748 aa17.24■□□□□ 0.35
SQSTM1-201ENST00000360718 SPATA31A3Q5VYP0 1347 aa17.24■□□□□ 0.35
SQSTM1-201ENST00000360718 GCP02774 474 aa17.23■□□□□ 0.35
SQSTM1-201ENST00000360718 PDE3BQ13370 1112 aa17.23■□□□□ 0.35
SQSTM1-201ENST00000360718 SOS2Q07890 1332 aaPredicted RBP17.23■□□□□ 0.35
SQSTM1-201ENST00000360718 CRYBG1Q9Y4K1 1723 aa17.23■□□□□ 0.35
SQSTM1-201ENST00000360718 HMOX1P09601 288 aa17.23■□□□□ 0.35
SQSTM1-201ENST00000360718 HOXC9P31274 260 aa17.23■□□□□ 0.35
SQSTM1-201ENST00000360718 AMPHP49418 695 aa17.23■□□□□ 0.35
SQSTM1-201ENST00000360718 ZNF521Q96K83 1311 aa17.23■□□□□ 0.35
SQSTM1-201ENST00000360718 TCP11L2Q8N4U5 519 aa17.22■□□□□ 0.35
SQSTM1-201ENST00000360718 CDCA7LQ96GN5 454 aa17.22■□□□□ 0.35
SQSTM1-201ENST00000360718 RSPH6AQ9H0K4 717 aa17.22■□□□□ 0.35
SQSTM1-201ENST00000360718 RRP7AQ9Y3A4 280 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-201ENST00000360718 ROBO1Q9Y6N7 1651 aa17.22■□□□□ 0.35
SQSTM1-201ENST00000360718 PHRF1Q9P1Y6 1649 aaKnown RBP17.22■□□□□ 0.35
SQSTM1-201ENST00000360718 KCNH5Q8NCM2 988 aa17.21■□□□□ 0.35
SQSTM1-201ENST00000360718 CABLES1Q8TDN4 633 aa17.21■□□□□ 0.35
SQSTM1-201ENST00000360718 CCDC136Q96JN2 1154 aa17.21■□□□□ 0.34
SQSTM1-201ENST00000360718 NEUROD2Q15784 382 aa17.19■□□□□ 0.34
SQSTM1-201ENST00000360718 AEBP1Q8IUX7 1158 aa17.19■□□□□ 0.34
SQSTM1-201ENST00000360718 KIF24Q5T7B8 1368 aa17.19■□□□□ 0.34
SQSTM1-201ENST00000360718 FCHSD2O94868 740 aa17.19■□□□□ 0.34
SQSTM1-201ENST00000360718 NEFMP07197 916 aa17.19■□□□□ 0.34
SQSTM1-201ENST00000360718 PRKAR2BP31323 418 aa17.19■□□□□ 0.34
SQSTM1-201ENST00000360718 ARHGEF25Q86VW2 580 aa17.19■□□□□ 0.34
SQSTM1-201ENST00000360718 MAPK8IP3Q9UPT6 1336 aa17.19■□□□□ 0.34
SQSTM1-201ENST00000360718 ZBTB7CA1YPR0 619 aa17.18■□□□□ 0.34
SQSTM1-201ENST00000360718 PHACTR3Q96KR7 559 aa17.18■□□□□ 0.34
SQSTM1-201ENST00000360718 RTL1A6NKG5 1358 aa17.18■□□□□ 0.34
SQSTM1-201ENST00000360718 IP6K1Q92551 441 aa17.17■□□□□ 0.34
SQSTM1-201ENST00000360718 RGPD5Q99666 1765 aa17.17■□□□□ 0.34
SQSTM1-201ENST00000360718 ARHGEF10O15013 1369 aa17.17■□□□□ 0.34
SQSTM1-201ENST00000360718 ZC3H6P61129 1189 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-201ENST00000360718 SULT6B1Q6IMI4 303 aa17.16■□□□□ 0.34
SQSTM1-201ENST00000360718 PHF23Q9BUL5 403 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-201ENST00000360718 SPINK5Q9NQ38 1064 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-201ENST00000360718 LTV1Q96GA3 475 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-201ENST00000360718 EYA1Q99502 592 aa17.16■□□□□ 0.34
SQSTM1-201ENST00000360718 RGPD2P0DJD1 1756 aa17.15■□□□□ 0.34
SQSTM1-201ENST00000360718 TMPOP42166 694 aaKnown RBP17.15■□□□□ 0.34
SQSTM1-201ENST00000360718 WWC1Q8IX03 1113 aa17.15■□□□□ 0.34
SQSTM1-201ENST00000360718 AXIN2Q9Y2T1 843 aa17.15■□□□□ 0.34
SQSTM1-201ENST00000360718 ABCA3Q99758 1704 aa17.14■□□□□ 0.33
SQSTM1-201ENST00000360718 IGSF1Q8N6C5 1336 aa17.14■□□□□ 0.33
SQSTM1-201ENST00000360718 GOLGA2Q08379 1002 aa17.14■□□□□ 0.33
SQSTM1-201ENST00000360718 COL18A1P39060 1754 aa17.13■□□□□ 0.33
SQSTM1-201ENST00000360718 NCBP3Q53F19 620 aaKnown RBP17.13■□□□□ 0.33
SQSTM1-201ENST00000360718 AHDC1Q5TGY3 1603 aaPredicted RBP17.13■□□□□ 0.33
SQSTM1-201ENST00000360718 TRIM35Q9UPQ4 493 aa17.12■□□□□ 0.33
SQSTM1-201ENST00000360718 KDRP35968 1356 aa17.12■□□□□ 0.33
SQSTM1-201ENST00000360718 DLG5Q8TDM6 1919 aa17.12■□□□□ 0.33
SQSTM1-201ENST00000360718 BCL11AQ9H165 835 aa17.12■□□□□ 0.33
SQSTM1-201ENST00000360718 CCDC27Q2M243 656 aa17.1■□□□□ 0.33
SQSTM1-201ENST00000360718 SLFN5Q08AF3 891 aa17.1■□□□□ 0.33
SQSTM1-201ENST00000360718 DUSP27Q5VZP5 1158 aa17.1■□□□□ 0.33
SQSTM1-201ENST00000360718 USHBP1Q8N6Y0 703 aa17.1■□□□□ 0.33
SQSTM1-201ENST00000360718 LRRC59Q96AG4 307 aaKnown RBP17.1■□□□□ 0.33
SQSTM1-201ENST00000360718 KIAA0232Q92628 1395 aa17.1■□□□□ 0.33
SQSTM1-201ENST00000360718 RIPK4P57078 832 aa17.09■□□□□ 0.33
SQSTM1-201ENST00000360718 CHRNA2Q15822 529 aa17.09■□□□□ 0.33
SQSTM1-201ENST00000360718 NBPF6Q5VWK0 638 aa17.09■□□□□ 0.33
SQSTM1-201ENST00000360718 NBPF4Q96M43 638 aa17.09■□□□□ 0.33
SQSTM1-201ENST00000360718 RRP1P56182 461 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-201ENST00000360718 RCAN3Q9UKA8 241 aa17.09■□□□□ 0.33
SQSTM1-201ENST00000360718 PIP4K2BP78356 416 aa17.08■□□□□ 0.33
SQSTM1-201ENST00000360718 TRMT2AQ8IZ69 625 aaKnown RBP17.08■□□□□ 0.33
SQSTM1-201ENST00000360718 CPDO75976 1380 aa17.08■□□□□ 0.32
SQSTM1-201ENST00000360718 E9PSI1 815 aa17.08■□□□□ 0.32
SQSTM1-201ENST00000360718 NFE2L2Q16236 605 aa17.08■□□□□ 0.32
SQSTM1-201ENST00000360718 WDR63Q8IWG1 891 aa17.07■□□□□ 0.32
SQSTM1-201ENST00000360718 ANKRD24Q8TF21 1146 aa17.07■□□□□ 0.32
SQSTM1-201ENST00000360718 PHLPP1O60346 1717 aa17.07■□□□□ 0.32
SQSTM1-201ENST00000360718 COL16A1Q07092 1604 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-201ENST00000360718 TOM1O60784 492 aa17.07■□□□□ 0.32
SQSTM1-201ENST00000360718 ERBB3P21860 1342 aa17.06■□□□□ 0.32
SQSTM1-201ENST00000360718 CAMTA1Q9Y6Y1 1673 aa17.06■□□□□ 0.32
SQSTM1-201ENST00000360718 UBAP1LF5GYI3 381 aa17.05■□□□□ 0.32
SQSTM1-201ENST00000360718 THUMPD2Q9BTF0 503 aaKnown RBP17.04■□□□□ 0.32
SQSTM1-201ENST00000360718 LMO7Q8WWI1 1683 aa17.04■□□□□ 0.32
SQSTM1-201ENST00000360718 NCAPD2Q15021 1401 aa17.04■□□□□ 0.32
SQSTM1-201ENST00000360718 ABCC6O95255 1503 aa17.03■□□□□ 0.32
SQSTM1-201ENST00000360718 FAM83GA6ND36 823 aa17.03■□□□□ 0.32
SQSTM1-201ENST00000360718 COL22A1Q8NFW1 1626 aaPredicted RBP17.03■□□□□ 0.32
SQSTM1-201ENST00000360718 ANP32AP39687 249 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-201ENST00000360718 MTHFSDQ2M296 383 aaKnown RBP17.03■□□□□ 0.32
SQSTM1-201ENST00000360718 LMOD3Q0VAK6 560 aa17.02■□□□□ 0.32
SQSTM1-201ENST00000360718 CERKQ8TCT0 537 aa17.02■□□□□ 0.32
SQSTM1-201ENST00000360718 PRDM11Q9NQV5 511 aa17.02■□□□□ 0.32
SQSTM1-201ENST00000360718 NOP58Q9Y2X3 529 aaKnown RBP17.02■□□□□ 0.32
SQSTM1-201ENST00000360718 HAP1P54257 671 aaPredicted RBP17.01■□□□□ 0.31
SQSTM1-201ENST00000360718 DCTN1Q14203 1278 aa17.01■□□□□ 0.31
SQSTM1-201ENST00000360718 FAM208AQ9UK61 1670 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms