RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 NSD3Q9BZ95 1437 aa14.06□□□□□ -0.16
COL9A1-202ENST00000357250 DISP3Q9P2K9 1392 aa14.05□□□□□ -0.16
COL9A1-202ENST00000357250 PIP4K2AP48426 406 aaPredicted RBP14.05□□□□□ -0.16
COL9A1-202ENST00000357250 MNS1Q8NEH6 495 aa14.05□□□□□ -0.16
COL9A1-202ENST00000357250 KINO60870 393 aaKnown RBP14.05□□□□□ -0.16
COL9A1-202ENST00000357250 RPAP2Q8IXW5 612 aaPredicted RBP14.05□□□□□ -0.16
COL9A1-202ENST00000357250 IFT57Q9NWB7 429 aa14.05□□□□□ -0.16
COL9A1-202ENST00000357250 NOB1Q9ULX3 412 aaKnown RBP14.05□□□□□ -0.16
COL9A1-202ENST00000357250 HMGN5P82970 282 aaKnown RBP14.05□□□□□ -0.16
COL9A1-202ENST00000357250 AIMP1Q12904 312 aaKnown RBP14.05□□□□□ -0.16
COL9A1-202ENST00000357250 JMYQ8N9B5 988 aa14.05□□□□□ -0.16
COL9A1-202ENST00000357250 SYTL4Q96C24 671 aaPredicted RBP14.05□□□□□ -0.16
COL9A1-202ENST00000357250 CCDC173Q0VFZ6 552 aa14.04□□□□□ -0.16
COL9A1-202ENST00000357250 PROSER2Q86WR7 435 aaPredicted RBP14.04□□□□□ -0.16
COL9A1-202ENST00000357250 TRAPPC8Q9Y2L5 1435 aa14.04□□□□□ -0.16
COL9A1-202ENST00000357250 HDGFL1Q5TGJ6 251 aa14.04□□□□□ -0.16
COL9A1-202ENST00000357250 LRRCC1Q9C099 1032 aa14.04□□□□□ -0.16
COL9A1-202ENST00000357250 RTEL1-TNFRSF6BF6WH68 1400 aa14.04□□□□□ -0.16
COL9A1-202ENST00000357250 ADAMTS12P58397 1594 aa14.04□□□□□ -0.16
COL9A1-202ENST00000357250 WDR33Q9C0J8 1336 aaKnown RBP14.03□□□□□ -0.16
COL9A1-202ENST00000357250 ABCC11Q96J66 1382 aa14.03□□□□□ -0.16
COL9A1-202ENST00000357250 TATP17735 454 aaPredicted RBP14.03□□□□□ -0.16
COL9A1-202ENST00000357250 TSPY26PQ9H489 355 aa14.03□□□□□ -0.16
COL9A1-202ENST00000357250 NOS1P29475 1434 aa14.03□□□□□ -0.16
COL9A1-202ENST00000357250 SYCP2Q9BX26 1530 aa14.02□□□□□ -0.16
COL9A1-202ENST00000357250 SLC3A2P08195 630 aaKnown RBP14.02□□□□□ -0.16
COL9A1-202ENST00000357250 SLC4A2P04920 1241 aa14.02□□□□□ -0.16
COL9A1-202ENST00000357250 NUDT16Q96DE0 195 aaKnown RBP14.02□□□□□ -0.16
COL9A1-202ENST00000357250 CYP46A1Q9Y6A2 500 aa14.02□□□□□ -0.16
COL9A1-202ENST00000357250 C20orf194Q5TEA3 1177 aa14.02□□□□□ -0.17
COL9A1-202ENST00000357250 CTTNBP2Q8WZ74 1663 aa14.02□□□□□ -0.17
COL9A1-202ENST00000357250 K7ELQ4 463 aaPredicted RBP14.02□□□□□ -0.17
COL9A1-202ENST00000357250 KIF6Q6ZMV9 814 aa14.02□□□□□ -0.17
COL9A1-202ENST00000357250 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.01□□□□□ -0.17
COL9A1-202ENST00000357250 NME9Q86XW9 330 aa14.01□□□□□ -0.17
COL9A1-202ENST00000357250 AK7Q96M32 723 aa14.01□□□□□ -0.17
COL9A1-202ENST00000357250 KIAA0556O60303 1618 aa14.01□□□□□ -0.17
COL9A1-202ENST00000357250 CCDC158Q5M9N0 1113 aa14.01□□□□□ -0.17
COL9A1-202ENST00000357250 ZNF771Q7L3S4 317 aaPredicted RBP14.01□□□□□ -0.17
COL9A1-202ENST00000357250 CCDC43Q96MW1 224 aaKnown RBP14.01□□□□□ -0.17
COL9A1-202ENST00000357250 DCTN1Q14203 1278 aa14.01□□□□□ -0.17
COL9A1-202ENST00000357250 NCBP3Q53F19 620 aaKnown RBP14.01□□□□□ -0.17
COL9A1-202ENST00000357250 CHD1LQ86WJ1 897 aa14.01□□□□□ -0.17
COL9A1-202ENST00000357250 ERCC4Q92889 916 aaPredicted RBP14.01□□□□□ -0.17
COL9A1-202ENST00000357250 ZSCAN31Q96LW9 406 aaPredicted RBP14.01□□□□□ -0.17
COL9A1-202ENST00000357250 ASXL2Q76L83 1435 aa14□□□□□ -0.17
COL9A1-202ENST00000357250 SLFN5Q08AF3 891 aa14□□□□□ -0.17
COL9A1-202ENST00000357250 HSP90B2PQ58FF3 399 aa14□□□□□ -0.17
COL9A1-202ENST00000357250 FAM13BQ9NYF5 915 aa14□□□□□ -0.17
COL9A1-202ENST00000357250 EIF4G3O43432 1585 aaKnown RBP14□□□□□ -0.17
COL9A1-202ENST00000357250 CAVIN1Q6NZI2 390 aaKnown RBP14□□□□□ -0.17
COL9A1-202ENST00000357250 DHX29Q7Z478 1369 aaKnown RBP14□□□□□ -0.17
COL9A1-202ENST00000357250 DISP1Q96F81 1524 aa14□□□□□ -0.17
COL9A1-202ENST00000357250 CCDC61Q9Y6R9 512 aa14□□□□□ -0.17
COL9A1-202ENST00000357250 TXLNAP40222 546 aa13.99□□□□□ -0.17
COL9A1-202ENST00000357250 FILIP1LQ4L180 1135 aa13.99□□□□□ -0.17
COL9A1-202ENST00000357250 RUFY1Q96T51 708 aa13.99□□□□□ -0.17
COL9A1-202ENST00000357250 ZSCAN25Q6NSZ9 544 aa13.99□□□□□ -0.17
COL9A1-202ENST00000357250 TRIM5Q9C035 493 aa13.99□□□□□ -0.17
COL9A1-202ENST00000357250 GNL3LQ9NVN8 582 aaKnown RBP13.99□□□□□ -0.17
COL9A1-202ENST00000357250 WDR62O43379 1518 aa13.99□□□□□ -0.17
COL9A1-202ENST00000357250 PLCH2O75038 1416 aa13.99□□□□□ -0.17
COL9A1-202ENST00000357250 EMILIN1Q9Y6C2 1016 aa13.99□□□□□ -0.17
COL9A1-202ENST00000357250 NFE2L2Q16236 605 aa13.99□□□□□ -0.17
COL9A1-202ENST00000357250 MIS18AQ9NYP9 233 aa13.99□□□□□ -0.17
COL9A1-202ENST00000357250 KRT32Q14532 448 aa13.98□□□□□ -0.17
COL9A1-202ENST00000357250 SMARCE1Q969G3 411 aa13.98□□□□□ -0.17
COL9A1-202ENST00000357250 SPG7Q9UQ90 795 aa13.98□□□□□ -0.17
COL9A1-202ENST00000357250 POGZQ7Z3K3 1410 aa13.98□□□□□ -0.17
COL9A1-202ENST00000357250 CCDC192P0DO97 292 aa13.98□□□□□ -0.17
COL9A1-202ENST00000357250 MSH5O43196 834 aa13.97□□□□□ -0.17
COL9A1-202ENST00000357250 PRPF40AO75400 957 aaKnown RBP13.97□□□□□ -0.17
COL9A1-202ENST00000357250 KRT85P78386 507 aa13.97□□□□□ -0.17
COL9A1-202ENST00000357250 ALDH1L2Q3SY69 923 aa13.97□□□□□ -0.17
COL9A1-202ENST00000357250 STK38Q15208 465 aa13.97□□□□□ -0.17
COL9A1-202ENST00000357250 NACAP1Q9BZK3 213 aa13.97□□□□□ -0.17
COL9A1-202ENST00000357250 DACH1Q9UI36 760 aa13.97□□□□□ -0.17
COL9A1-202ENST00000357250 CCDC27Q2M243 656 aa13.96□□□□□ -0.17
COL9A1-202ENST00000357250 RAD21O60216 631 aa13.96□□□□□ -0.17
COL9A1-202ENST00000357250 ZNF530Q6P9A1 599 aaPredicted RBP13.96□□□□□ -0.17
COL9A1-202ENST00000357250 IL27Q8NEV9 243 aa13.96□□□□□ -0.17
COL9A1-202ENST00000357250 OFD1O75665 1012 aa13.96□□□□□ -0.17
COL9A1-202ENST00000357250 CTNNA3Q9UI47 895 aa13.96□□□□□ -0.17
COL9A1-202ENST00000357250 DENND4BO75064 1496 aaPredicted RBP13.96□□□□□ -0.18
COL9A1-202ENST00000357250 DNAJC2Q99543 621 aaKnown RBP13.96□□□□□ -0.18
COL9A1-202ENST00000357250 HMGB2P26583 209 aaKnown RBP13.95□□□□□ -0.18
COL9A1-202ENST00000357250 ZC3H6P61129 1189 aaKnown RBP13.95□□□□□ -0.18
COL9A1-202ENST00000357250 PDE4CQ08493 712 aa13.95□□□□□ -0.18
COL9A1-202ENST00000357250 TRIM22Q8IYM9 498 aa13.95□□□□□ -0.18
COL9A1-202ENST00000357250 TMPOP42166 694 aaKnown RBP13.95□□□□□ -0.18
COL9A1-202ENST00000357250 MYO6Q9UM54 1294 aa13.95□□□□□ -0.18
COL9A1-202ENST00000357250 ANKLE2Q86XL3 938 aa13.95□□□□□ -0.18
COL9A1-202ENST00000357250 CDKL5O76039 1030 aa13.94□□□□□ -0.18
COL9A1-202ENST00000357250 VSIG10Q8N0Z9 540 aa13.94□□□□□ -0.18
COL9A1-202ENST00000357250 RNF214Q8ND24 703 aa13.94□□□□□ -0.18
COL9A1-202ENST00000357250 C14orf93Q9H972 538 aaKnown RBP13.94□□□□□ -0.18
COL9A1-202ENST00000357250 PPP6R1Q9UPN7 881 aa13.94□□□□□ -0.18
COL9A1-202ENST00000357250 KDM5BQ9UGL1 1544 aa13.94□□□□□ -0.18
COL9A1-202ENST00000357250 TTC39AQ5SRH9 613 aa13.94□□□□□ -0.18
COL9A1-202ENST00000357250 STRN4Q9NRL3 753 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms