RNA–Protein interactions for RNA: ENST00000356141.8

NPAS3-202, Transcript of neuronal PAS domain protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NPAS3, Length 2,802 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-202ENST00000356141 SMC4Q9NTJ3 1288 aa22.78■■□□□ 1.24
NPAS3-202ENST00000356141 ANO8Q9HCE9 1232 aaPredicted RBP22.78■■□□□ 1.24
NPAS3-202ENST00000356141 USHBP1Q8N6Y0 703 aa22.77■■□□□ 1.24
NPAS3-202ENST00000356141 DIP2AQ14689 1571 aa22.77■■□□□ 1.24
NPAS3-202ENST00000356141 ANKRD26Q9UPS8 1709 aa22.77■■□□□ 1.24
NPAS3-202ENST00000356141 RGS3P49796 1198 aa22.77■■□□□ 1.24
NPAS3-202ENST00000356141 NPM2Q86SE8 214 aaKnown RBP22.77■■□□□ 1.24
NPAS3-202ENST00000356141 ITSN1Q15811 1721 aa22.76■■□□□ 1.23
NPAS3-202ENST00000356141 MCM10Q7L590 875 aa22.76■■□□□ 1.23
NPAS3-202ENST00000356141 KLHL34Q8N239 644 aa22.75■■□□□ 1.23
NPAS3-202ENST00000356141 MIS18AQ9NYP9 233 aa22.75■■□□□ 1.23
NPAS3-202ENST00000356141 PROSER2Q86WR7 435 aaPredicted RBP22.74■■□□□ 1.23
NPAS3-202ENST00000356141 PSME1Q06323 249 aa22.74■■□□□ 1.23
NPAS3-202ENST00000356141 KRT24Q2M2I5 525 aa22.74■■□□□ 1.23
NPAS3-202ENST00000356141 TSPYL6Q8N831 410 aa22.74■■□□□ 1.23
NPAS3-202ENST00000356141 PHF8Q9UPP1 1060 aa22.74■■□□□ 1.23
NPAS3-202ENST00000356141 SSH1Q8WYL5 1049 aa22.73■■□□□ 1.23
NPAS3-202ENST00000356141 NFE2L2Q16236 605 aa22.73■■□□□ 1.23
NPAS3-202ENST00000356141 CCDC27Q2M243 656 aa22.72■■□□□ 1.23
NPAS3-202ENST00000356141 AEBP2Q6ZN18 517 aaPredicted RBP22.72■■□□□ 1.23
NPAS3-202ENST00000356141 SETD1BQ9UPS6 1966 aaKnown RBP22.71■■□□□ 1.23
NPAS3-202ENST00000356141 PTCH1Q13635 1447 aa22.71■■□□□ 1.23
NPAS3-202ENST00000356141 MON2Q7Z3U7 1717 aa22.71■■□□□ 1.23
NPAS3-202ENST00000356141 IGHDP01880 384 aa22.7■■□□□ 1.22
NPAS3-202ENST00000356141 NGEFQ8N5V2 710 aa22.7■■□□□ 1.22
NPAS3-202ENST00000356141 FTSJ3Q8IY81 847 aaKnown RBP22.69■■□□□ 1.22
NPAS3-202ENST00000356141 AKAP12Q02952 1782 aa22.68■■□□□ 1.22
NPAS3-202ENST00000356141 NOB1Q9ULX3 412 aaKnown RBP22.68■■□□□ 1.22
NPAS3-202ENST00000356141 NPHP4O75161 1426 aaPredicted RBP22.68■■□□□ 1.22
NPAS3-202ENST00000356141 PNNQ9H307 717 aaKnown RBP22.67■■□□□ 1.22
NPAS3-202ENST00000356141 ADAMTSL3P82987 1691 aa22.67■■□□□ 1.22
NPAS3-202ENST00000356141 OVOS2A0A0J9YW53 1432 aa22.67■■□□□ 1.22
NPAS3-202ENST00000356141 OVOS2Q6IE36 1432 aa22.67■■□□□ 1.22
NPAS3-202ENST00000356141 AATKQ6ZMQ8 1374 aa22.66■■□□□ 1.22
NPAS3-202ENST00000356141 MBIPQ9NS73 344 aa22.66■■□□□ 1.22
NPAS3-202ENST00000356141 ADGRB2O60241 1585 aa22.65■■□□□ 1.22
NPAS3-202ENST00000356141 CDK12Q9NYV4 1490 aaPredicted RBP22.65■■□□□ 1.22
NPAS3-202ENST00000356141 ITPRIPQ8IWB1 547 aa22.65■■□□□ 1.22
NPAS3-202ENST00000356141 EYA1Q99502 592 aa22.65■■□□□ 1.22
NPAS3-202ENST00000356141 XRN1Q8IZH2 1706 aaKnown RBP22.63■■□□□ 1.21
NPAS3-202ENST00000356141 C8orf58Q8NAV2 365 aa22.63■■□□□ 1.21
NPAS3-202ENST00000356141 MSH5O43196 834 aa22.63■■□□□ 1.21
NPAS3-202ENST00000356141 TRIM27P14373 513 aa22.63■■□□□ 1.21
NPAS3-202ENST00000356141 PCDHB15Q9Y5E8 787 aa22.62■■□□□ 1.21
NPAS3-202ENST00000356141 TOPAZ1Q8N9V7 1692 aa22.62■■□□□ 1.21
NPAS3-202ENST00000356141 PODXL2Q9NZ53 605 aa22.61■■□□□ 1.21
NPAS3-202ENST00000356141 PEAK1Q9H792 1746 aa22.61■■□□□ 1.21
NPAS3-202ENST00000356141 MTHFSDQ2M296 383 aaKnown RBP22.61■■□□□ 1.21
NPAS3-202ENST00000356141 SSH2Q76I76 1423 aa22.61■■□□□ 1.21
NPAS3-202ENST00000356141 TTC21AQ8NDW8 1320 aa22.61■■□□□ 1.21
NPAS3-202ENST00000356141 ZKSCAN2Q63HK3 967 aa22.6■■□□□ 1.21
NPAS3-202ENST00000356141 NECTIN2Q92692 538 aa22.6■■□□□ 1.21
NPAS3-202ENST00000356141 LRRC59Q96AG4 307 aaKnown RBP22.6■■□□□ 1.21
NPAS3-202ENST00000356141 NALCNQ8IZF0 1738 aa22.6■■□□□ 1.21
NPAS3-202ENST00000356141 HOXC9P31274 260 aa22.59■■□□□ 1.21
NPAS3-202ENST00000356141 DZIP1LQ8IYY4 767 aaKnown RBP22.59■■□□□ 1.21
NPAS3-202ENST00000356141 NRKQ7Z2Y5 1582 aa22.58■■□□□ 1.21
NPAS3-202ENST00000356141 KDM2BQ8NHM5 1336 aa22.58■■□□□ 1.21
NPAS3-202ENST00000356141 ZC3H6P61129 1189 aaKnown RBP22.58■■□□□ 1.2
NPAS3-202ENST00000356141 PDE3AQ14432 1141 aa22.58■■□□□ 1.2
NPAS3-202ENST00000356141 CABLES1Q8TDN4 633 aa22.58■■□□□ 1.2
NPAS3-202ENST00000356141 TMEM57Q8N5G2 664 aa22.57■■□□□ 1.2
NPAS3-202ENST00000356141 C1orf115Q9H7X2 142 aa22.57■■□□□ 1.2
NPAS3-202ENST00000356141 PIK3C2AO00443 1686 aa22.56■■□□□ 1.2
NPAS3-202ENST00000356141 PDE4AP27815 886 aa22.56■■□□□ 1.2
NPAS3-202ENST00000356141 TWISTNBQ3B726 338 aaPredicted RBP22.56■■□□□ 1.2
NPAS3-202ENST00000356141 CENPQQ7L2Z9 268 aaPredicted RBP22.55■■□□□ 1.2
NPAS3-202ENST00000356141 FLT4P35916 1363 aa22.55■■□□□ 1.2
NPAS3-202ENST00000356141 CHD2O14647 1828 aaKnown RBP22.54■■□□□ 1.2
NPAS3-202ENST00000356141 USP31Q70CQ4 1352 aa22.54■■□□□ 1.2
NPAS3-202ENST00000356141 PIK3R4Q99570 1358 aa22.54■■□□□ 1.2
NPAS3-202ENST00000356141 GNAI1P63096 354 aa22.54■■□□□ 1.2
NPAS3-202ENST00000356141 VAMP4O75379 141 aa22.53■■□□□ 1.2
NPAS3-202ENST00000356141 ATF7IPQ6VMQ6 1270 aa22.53■■□□□ 1.2
NPAS3-202ENST00000356141 SBNO1A3KN83 1393 aa22.52■■□□□ 1.2
NPAS3-202ENST00000356141 MVPQ14764 893 aaKnown RBP22.52■■□□□ 1.2
NPAS3-202ENST00000356141 ADGRL3Q9HAR2 1447 aa22.52■■□□□ 1.2
NPAS3-202ENST00000356141 RTF1Q92541 710 aaKnown RBP22.52■■□□□ 1.2
NPAS3-202ENST00000356141 KRT28Q7Z3Y7 464 aa22.51■■□□□ 1.19
NPAS3-202ENST00000356141 ATF3P18847 181 aa22.5■■□□□ 1.19
NPAS3-202ENST00000356141 CFAP44Q96MT7 982 aa22.5■■□□□ 1.19
NPAS3-202ENST00000356141 TMEM94Q12767 1356 aa22.5■■□□□ 1.19
NPAS3-202ENST00000356141 IL16Q14005 1332 aa22.5■■□□□ 1.19
NPAS3-202ENST00000356141 FMN2Q9NZ56 1722 aa22.5■■□□□ 1.19
NPAS3-202ENST00000356141 NBPF6Q5VWK0 638 aa22.5■■□□□ 1.19
NPAS3-202ENST00000356141 NBPF4Q96M43 638 aa22.5■■□□□ 1.19
NPAS3-202ENST00000356141 IFT57Q9NWB7 429 aa22.5■■□□□ 1.19
NPAS3-202ENST00000356141 DLG5Q8TDM6 1919 aa22.5■■□□□ 1.19
NPAS3-202ENST00000356141 ANKARQ7Z5J8 1434 aa22.48■■□□□ 1.19
NPAS3-202ENST00000356141 ZNF142P52746 1687 aaPredicted RBP22.48■■□□□ 1.19
NPAS3-202ENST00000356141 GCP02774 474 aa22.48■■□□□ 1.19
NPAS3-202ENST00000356141 LMOD3Q0VAK6 560 aa22.47■■□□□ 1.19
NPAS3-202ENST00000356141 TSPYL4Q9UJ04 414 aa22.47■■□□□ 1.19
NPAS3-202ENST00000356141 AXIN2Q9Y2T1 843 aa22.46■■□□□ 1.19
NPAS3-202ENST00000356141 ZNF853P0CG23 659 aa22.46■■□□□ 1.19
NPAS3-202ENST00000356141 C19orf44Q9H6X5 657 aa22.46■■□□□ 1.19
NPAS3-202ENST00000356141 CHRNA2Q15822 529 aa22.45■■□□□ 1.18
NPAS3-202ENST00000356141 CALD1Q05682 793 aaKnown RBP22.44■■□□□ 1.18
NPAS3-202ENST00000356141 MRPL50Q8N5N7 158 aaKnown RBP22.44■■□□□ 1.18
NPAS3-202ENST00000356141 IGSF1Q8N6C5 1336 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms