RNA–Protein interactions for RNA: ENST00000355765.10

PRPF39-201, Transcript of pre-mRNA processing factor 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF39, Length 2,868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-201ENST00000355765 ABCA9Q8IUA7 1624 aa23.23■■□□□ 1.31
PRPF39-201ENST00000355765 NCBP3Q53F19 620 aaKnown RBP23.23■■□□□ 1.31
PRPF39-201ENST00000355765 DNTTIP2Q5QJE6 756 aaKnown RBP23.23■■□□□ 1.31
PRPF39-201ENST00000355765 ADGRL1O94910 1474 aa23.22■■□□□ 1.31
PRPF39-201ENST00000355765 GGNBP2Q9H3C7 697 aa23.21■■□□□ 1.31
PRPF39-201ENST00000355765 ELL2O00472 640 aaPredicted RBP23.2■■□□□ 1.3
PRPF39-201ENST00000355765 KIF3BO15066 747 aa23.2■■□□□ 1.3
PRPF39-201ENST00000355765 MCM5P33992 734 aa23.2■■□□□ 1.3
PRPF39-201ENST00000355765 C16orf71Q8IYS4 520 aaPredicted RBP23.19■■□□□ 1.3
PRPF39-201ENST00000355765 MYOM2P54296 1465 aa23.19■■□□□ 1.3
PRPF39-201ENST00000355765 CCDC94Q9BW85 323 aaPredicted RBP23.19■■□□□ 1.3
PRPF39-201ENST00000355765 USP26Q9BXU7 913 aa23.19■■□□□ 1.3
PRPF39-201ENST00000355765 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.19■■□□□ 1.3
PRPF39-201ENST00000355765 FAM177BA6PVY3 158 aa23.18■■□□□ 1.3
PRPF39-201ENST00000355765 ALDH1L2Q3SY69 923 aa23.18■■□□□ 1.3
PRPF39-201ENST00000355765 ARAP3Q8WWN8 1544 aa23.18■■□□□ 1.3
PRPF39-201ENST00000355765 PLEKHM2Q8IWE5 1019 aa23.18■■□□□ 1.3
PRPF39-201ENST00000355765 IL16Q14005 1332 aa23.17■■□□□ 1.3
PRPF39-201ENST00000355765 ATAD2Q6PL18 1390 aa23.17■■□□□ 1.3
PRPF39-201ENST00000355765 SAFB2Q14151 953 aaKnown RBP eCLIP23.17■■□□□ 1.3
PRPF39-201ENST00000355765 ZNF830Q96NB3 372 aaPredicted RBP23.17■■□□□ 1.3
PRPF39-201ENST00000355765 CABP2Q9NPB3 220 aa23.17■■□□□ 1.3
PRPF39-201ENST00000355765 MYO3AQ8NEV4 1616 aa23.17■■□□□ 1.3
PRPF39-201ENST00000355765 KIAA2012Q0VF49 1180 aa23.16■■□□□ 1.3
PRPF39-201ENST00000355765 THUMPD2Q9BTF0 503 aaKnown RBP23.15■■□□□ 1.3
PRPF39-201ENST00000355765 CWC22Q9HCG8 908 aaKnown RBP23.15■■□□□ 1.3
PRPF39-201ENST00000355765 OTUD7AQ8TE49 926 aaPredicted RBP23.15■■□□□ 1.3
PRPF39-201ENST00000355765 MED14O60244 1454 aa23.15■■□□□ 1.3
PRPF39-201ENST00000355765 TSPYL6Q8N831 410 aa23.15■■□□□ 1.3
PRPF39-201ENST00000355765 TET3O43151 1660 aa23.14■■□□□ 1.3
PRPF39-201ENST00000355765 APBB1O00213 710 aa23.14■■□□□ 1.29
PRPF39-201ENST00000355765 CBX1P83916 185 aa23.14■■□□□ 1.29
PRPF39-201ENST00000355765 FOXD4L6Q3SYB3 417 aaPredicted RBP23.14■■□□□ 1.29
PRPF39-201ENST00000355765 FOXD4L3Q6VB84 417 aaPredicted RBP23.14■■□□□ 1.29
PRPF39-201ENST00000355765 SENP3Q9H4L4 574 aaPredicted RBP23.14■■□□□ 1.29
PRPF39-201ENST00000355765 QRICH2Q9H0J4 1663 aa23.14■■□□□ 1.29
PRPF39-201ENST00000355765 DMTNQ08495 405 aa23.14■■□□□ 1.29
PRPF39-201ENST00000355765 C17orf53Q8N3J3 647 aaPredicted RBP23.14■■□□□ 1.29
PRPF39-201ENST00000355765 ST18O60284 1047 aa23.13■■□□□ 1.29
PRPF39-201ENST00000355765 ZSCAN20P17040 1043 aaPredicted RBP23.13■■□□□ 1.29
PRPF39-201ENST00000355765 TTC22Q5TAA0 569 aa23.13■■□□□ 1.29
PRPF39-201ENST00000355765 MYRIPQ8NFW9 859 aa23.13■■□□□ 1.29
PRPF39-201ENST00000355765 ZFYVE16Q7Z3T8 1539 aa23.13■■□□□ 1.29
PRPF39-201ENST00000355765 ZNF710Q8N1W2 664 aa23.12■■□□□ 1.29
PRPF39-201ENST00000355765 MRPL50Q8N5N7 158 aaKnown RBP23.12■■□□□ 1.29
PRPF39-201ENST00000355765 ANKRD36BQ8N2N9 1353 aa23.11■■□□□ 1.29
PRPF39-201ENST00000355765 TSPY26PQ9H489 355 aa23.11■■□□□ 1.29
PRPF39-201ENST00000355765 NUTM2DQ5VT03 806 aaPredicted RBP23.1■■□□□ 1.29
PRPF39-201ENST00000355765 INTS3Q68E01 1043 aaKnown RBP23.1■■□□□ 1.29
PRPF39-201ENST00000355765 MROH2AA6NES4 1674 aa23.1■■□□□ 1.29
PRPF39-201ENST00000355765 PPRC1Q5VV67 1664 aaKnown RBP23.1■■□□□ 1.29
PRPF39-201ENST00000355765 USP32Q8NFA0 1604 aa23.1■■□□□ 1.29
PRPF39-201ENST00000355765 TPRNQ4KMQ1 711 aa23.1■■□□□ 1.29
PRPF39-201ENST00000355765 VAMP4O75379 141 aa23.09■■□□□ 1.29
PRPF39-201ENST00000355765 NOL8Q76FK4 1167 aaKnown RBP23.08■■□□□ 1.29
PRPF39-201ENST00000355765 ATP7AQ04656 1500 aa23.08■■□□□ 1.28
PRPF39-201ENST00000355765 KIF1BO60333 1816 aa23.08■■□□□ 1.28
PRPF39-201ENST00000355765 SMARCA5O60264 1052 aaPredicted RBP23.07■■□□□ 1.28
PRPF39-201ENST00000355765 CHMP4BQ9H444 224 aaKnown RBP23.07■■□□□ 1.28
PRPF39-201ENST00000355765 NSD2O96028 1365 aa23.07■■□□□ 1.28
PRPF39-201ENST00000355765 SDSP20132 328 aa23.07■■□□□ 1.28
PRPF39-201ENST00000355765 EVC2Q86UK5 1308 aa23.07■■□□□ 1.28
PRPF39-201ENST00000355765 GDPD2Q9HCC8 539 aa23.07■■□□□ 1.28
PRPF39-201ENST00000355765 DIAPH1O60610 1272 aaKnown RBP23.07■■□□□ 1.28
PRPF39-201ENST00000355765 MBD3O95983 291 aa23.07■■□□□ 1.28
PRPF39-201ENST00000355765 TTC12Q9H892 705 aaPredicted RBP23.07■■□□□ 1.28
PRPF39-201ENST00000355765 UTP14CQ5TAP6 766 aaKnown RBP23.06■■□□□ 1.28
PRPF39-201ENST00000355765 C14orf93Q9H972 538 aaKnown RBP23.06■■□□□ 1.28
PRPF39-201ENST00000355765 ZC3H13Q5T200 1668 aaKnown RBP23.06■■□□□ 1.28
PRPF39-201ENST00000355765 COL3A1P02461 1466 aaPredicted RBP23.05■■□□□ 1.28
PRPF39-201ENST00000355765 PRKAR2BP31323 418 aa23.05■■□□□ 1.28
PRPF39-201ENST00000355765 ATP2B3Q16720 1220 aa23.05■■□□□ 1.28
PRPF39-201ENST00000355765 PPP4R3BQ5MIZ7 849 aa23.05■■□□□ 1.28
PRPF39-201ENST00000355765 INO80Q9ULG1 1556 aaPredicted RBP23.04■■□□□ 1.28
PRPF39-201ENST00000355765 USP25Q9UHP3 1055 aa23.04■■□□□ 1.28
PRPF39-201ENST00000355765 NRXN1Q9ULB1 1477 aa23.04■■□□□ 1.28
PRPF39-201ENST00000355765 NOLC1Q14978 699 aaKnown RBP eCLIP23.04■■□□□ 1.285e-32■■■■■ 47.5
PRPF39-201ENST00000355765 IFT172Q9UG01 1749 aa23.04■■□□□ 1.28
PRPF39-201ENST00000355765 A0A1W2PP64 1363 aa23.04■■□□□ 1.28
PRPF39-201ENST00000355765 ABCC4O15439 1325 aa23.04■■□□□ 1.28
PRPF39-201ENST00000355765 DEPDC5O75140 1603 aa23.03■■□□□ 1.28
PRPF39-201ENST00000355765 FBLN1P23142 703 aa23.03■■□□□ 1.28
PRPF39-201ENST00000355765 NEK4P51957 841 aa23.03■■□□□ 1.28
PRPF39-201ENST00000355765 RIMBP3CA6NJZ7 1639 aa23.03■■□□□ 1.28
PRPF39-201ENST00000355765 RIMBP3BA6NNM3 1639 aa23.03■■□□□ 1.28
PRPF39-201ENST00000355765 RIMBP3Q9UFD9 1639 aa23.03■■□□□ 1.28
PRPF39-201ENST00000355765 PTCH1Q13635 1447 aa23.03■■□□□ 1.28
PRPF39-201ENST00000355765 GADD45BO75293 160 aaPredicted RBP23.03■■□□□ 1.28
PRPF39-201ENST00000355765 BRPF1P55201 1214 aaPredicted RBP23.02■■□□□ 1.28
PRPF39-201ENST00000355765 TMX3Q96JJ7 454 aa23.02■■□□□ 1.28
PRPF39-201ENST00000355765 DCTPP1Q9H773 170 aa23.02■■□□□ 1.28
PRPF39-201ENST00000355765 PIK3R4Q99570 1358 aa23.02■■□□□ 1.28
PRPF39-201ENST00000355765 SPDYE4A6NLX3 237 aa23.02■■□□□ 1.28
PRPF39-201ENST00000355765 CASC1Q6TDU7 716 aa23.02■■□□□ 1.28
PRPF39-201ENST00000355765 ARHGAP45Q92619 1136 aa23.02■■□□□ 1.28
PRPF39-201ENST00000355765 RAPGEF3O95398 923 aa23.01■■□□□ 1.27
PRPF39-201ENST00000355765 PIBF1Q8WXW3 757 aa23.01■■□□□ 1.27
PRPF39-201ENST00000355765 HMOX1P09601 288 aa23.01■■□□□ 1.27
PRPF39-201ENST00000355765 SRPK2P78362 688 aaKnown RBP23.01■■□□□ 1.27
PRPF39-201ENST00000355765 TULP4Q9NRJ4 1543 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms