RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 PXDNQ92626 1479 aa13.14□□□□□ -0.31
SYNE1-203ENST00000354674 PEAK1Q9H792 1746 aa13.14□□□□□ -0.31
SYNE1-203ENST00000354674 FBLN1P23142 703 aa13.14□□□□□ -0.31
SYNE1-203ENST00000354674 SBNO1A3KN83 1393 aa13.13□□□□□ -0.31
SYNE1-203ENST00000354674 SLIT3O75094 1523 aa13.13□□□□□ -0.31
SYNE1-203ENST00000354674 KRT28Q7Z3Y7 464 aa13.13□□□□□ -0.31
SYNE1-203ENST00000354674 SLAIN2Q9P270 581 aa13.13□□□□□ -0.31
SYNE1-203ENST00000354674 NFAT5O94916 1531 aa13.12□□□□□ -0.31
SYNE1-203ENST00000354674 NFKBIBQ15653 356 aa13.12□□□□□ -0.31
SYNE1-203ENST00000354674 BRINP3Q76B58 766 aa13.12□□□□□ -0.31
SYNE1-203ENST00000354674 ABTB2Q8N961 1025 aa13.12□□□□□ -0.31
SYNE1-203ENST00000354674 EMILIN1Q9Y6C2 1016 aa13.12□□□□□ -0.31
SYNE1-203ENST00000354674 NLRP6P59044 892 aa13.12□□□□□ -0.31
SYNE1-203ENST00000354674 NPHP3Q7Z494 1330 aa13.12□□□□□ -0.31
SYNE1-203ENST00000354674 RRAGDQ9NQL2 400 aaPredicted RBP13.11□□□□□ -0.31
SYNE1-203ENST00000354674 KIF24Q5T7B8 1368 aa13.11□□□□□ -0.31
SYNE1-203ENST00000354674 PHRF1Q9P1Y6 1649 aaKnown RBP13.11□□□□□ -0.31
SYNE1-203ENST00000354674 NHSL1Q5SYE7 1610 aa13.1□□□□□ -0.31
SYNE1-203ENST00000354674 USP19O94966 1318 aa13.1□□□□□ -0.31
SYNE1-203ENST00000354674 RRS1Q15050 365 aaKnown RBP13.1□□□□□ -0.31
SYNE1-203ENST00000354674 ARID3AQ99856 593 aa13.1□□□□□ -0.31
SYNE1-203ENST00000354674 DIAPH1O60610 1272 aaKnown RBP13.1□□□□□ -0.31
SYNE1-203ENST00000354674 IL13P35225 146 aa13.09□□□□□ -0.31
SYNE1-203ENST00000354674 PDE4CQ08493 712 aa13.09□□□□□ -0.31
SYNE1-203ENST00000354674 MAP3K19Q56UN5 1328 aa13.08□□□□□ -0.31
SYNE1-203ENST00000354674 CRYBG1Q9Y4K1 1723 aa13.08□□□□□ -0.31
SYNE1-203ENST00000354674 NUDCQ9Y266 331 aa13.08□□□□□ -0.32
SYNE1-203ENST00000354674 TNS3Q68CZ2 1445 aa13.08□□□□□ -0.32
SYNE1-203ENST00000354674 MED1Q15648 1581 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-203ENST00000354674 SOS2Q07890 1332 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-203ENST00000354674 IQSEC2Q5JU85 1478 aa13.08□□□□□ -0.32
SYNE1-203ENST00000354674 XPCQ01831 940 aaPredicted RBP13.08□□□□□ -0.32
SYNE1-203ENST00000354674 RGPD1P0DJD0 1748 aa13.08□□□□□ -0.32
SYNE1-203ENST00000354674 NUTM2GQ5VZR2 741 aa13.07□□□□□ -0.32
SYNE1-203ENST00000354674 BCL11BQ9C0K0 894 aaPredicted RBP13.07□□□□□ -0.32
SYNE1-203ENST00000354674 FLT4P35916 1363 aa13.07□□□□□ -0.32
SYNE1-203ENST00000354674 LTN1O94822 1766 aa13.07□□□□□ -0.32
SYNE1-203ENST00000354674 HSP90AA1P07900 732 aaKnown RBP13.07□□□□□ -0.32
SYNE1-203ENST00000354674 KCNH5Q8NCM2 988 aa13.07□□□□□ -0.32
SYNE1-203ENST00000354674 DDX17Q92841 729 aaKnown RBP13.07□□□□□ -0.32
SYNE1-203ENST00000354674 RTL1A6NKG5 1358 aa13.07□□□□□ -0.32
SYNE1-203ENST00000354674 SPATA31A3Q5VYP0 1347 aa13.06□□□□□ -0.32
SYNE1-203ENST00000354674 PPM1GO15355 546 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-203ENST00000354674 FRAT2O75474 233 aaPredicted RBP13.06□□□□□ -0.32
SYNE1-203ENST00000354674 RGS3P49796 1198 aa13.06□□□□□ -0.32
SYNE1-203ENST00000354674 NCBP3Q53F19 620 aaKnown RBP13.06□□□□□ -0.32
SYNE1-203ENST00000354674 PLEKHF1Q96S99 279 aa13.06□□□□□ -0.32
SYNE1-203ENST00000354674 USP35Q9P2H5 1018 aa13.06□□□□□ -0.32
SYNE1-203ENST00000354674 FAM43AQ8N2R8 423 aa13.05□□□□□ -0.32
SYNE1-203ENST00000354674 NGEFQ8N5V2 710 aa13.05□□□□□ -0.32
SYNE1-203ENST00000354674 RUNDC1Q96C34 613 aa13.05□□□□□ -0.32
SYNE1-203ENST00000354674 U2AF1L5P0DN76 240 aaPredicted RBP13.05□□□□□ -0.32
SYNE1-203ENST00000354674 U2AF1Q01081 240 aaKnown RBP eCLIP13.05□□□□□ -0.32
SYNE1-203ENST00000354674 ZNF521Q96K83 1311 aa13.05□□□□□ -0.32
SYNE1-203ENST00000354674 ARHGEF10O15013 1369 aa13.04□□□□□ -0.32
SYNE1-203ENST00000354674 CCDC146Q8IYE0 955 aa13.04□□□□□ -0.32
SYNE1-203ENST00000354674 AHDC1Q5TGY3 1603 aaPredicted RBP13.04□□□□□ -0.32
SYNE1-203ENST00000354674 ROBO1Q9Y6N7 1651 aa13.04□□□□□ -0.32
SYNE1-203ENST00000354674 AAMPQ13685 434 aa13.04□□□□□ -0.32
SYNE1-203ENST00000354674 EIF4A2Q14240 407 aaKnown RBP13.04□□□□□ -0.32
SYNE1-203ENST00000354674 FCHSD2O94868 740 aa13.04□□□□□ -0.32
SYNE1-203ENST00000354674 GCP02774 474 aa13.04□□□□□ -0.32
SYNE1-203ENST00000354674 HOXC9P31274 260 aa13.03□□□□□ -0.32
SYNE1-203ENST00000354674 HSP90AB2PQ58FF8 381 aa13.03□□□□□ -0.32
SYNE1-203ENST00000354674 U2SURPO15042 1029 aaKnown RBP13.02□□□□□ -0.32
SYNE1-203ENST00000354674 PDE4AP27815 886 aa13.02□□□□□ -0.32
SYNE1-203ENST00000354674 FGD1P98174 961 aa13.02□□□□□ -0.32
SYNE1-203ENST00000354674 PDE3BQ13370 1112 aa13.02□□□□□ -0.32
SYNE1-203ENST00000354674 ARHGEF25Q86VW2 580 aa13.02□□□□□ -0.32
SYNE1-203ENST00000354674 APAF1O14727 1248 aa13.02□□□□□ -0.33
SYNE1-203ENST00000354674 PHF23Q9BUL5 403 aaPredicted RBP13.02□□□□□ -0.33
SYNE1-203ENST00000354674 ABCC6O95255 1503 aa13.02□□□□□ -0.33
SYNE1-203ENST00000354674 SOX12O15370 315 aa13.02□□□□□ -0.33
SYNE1-203ENST00000354674 IP6K1Q92551 441 aa13.02□□□□□ -0.33
SYNE1-203ENST00000354674 PNNQ9H307 717 aaKnown RBP13.02□□□□□ -0.33
SYNE1-203ENST00000354674 AMPHP49418 695 aa13.01□□□□□ -0.33
SYNE1-203ENST00000354674 ABCA3Q99758 1704 aa13□□□□□ -0.33
SYNE1-203ENST00000354674 CCDC27Q2M243 656 aa13□□□□□ -0.33
SYNE1-203ENST00000354674 TCP11L2Q8N4U5 519 aa13□□□□□ -0.33
SYNE1-203ENST00000354674 COL18A1P39060 1754 aa13□□□□□ -0.33
SYNE1-203ENST00000354674 KDRP35968 1356 aa12.99□□□□□ -0.33
SYNE1-203ENST00000354674 CPDO75976 1380 aa12.99□□□□□ -0.33
SYNE1-203ENST00000354674 LMOD2Q6P5Q4 547 aa12.99□□□□□ -0.33
SYNE1-203ENST00000354674 IGSF1Q8N6C5 1336 aa12.98□□□□□ -0.33
SYNE1-203ENST00000354674 CAMTA1Q9Y6Y1 1673 aa12.98□□□□□ -0.33
SYNE1-203ENST00000354674 COL22A1Q8NFW1 1626 aaPredicted RBP12.98□□□□□ -0.33
SYNE1-203ENST00000354674 NCAPD2Q15021 1401 aa12.97□□□□□ -0.33
SYNE1-203ENST00000354674 PRKAR2BP31323 418 aa12.97□□□□□ -0.33
SYNE1-203ENST00000354674 WWC1Q8IX03 1113 aa12.96□□□□□ -0.33
SYNE1-203ENST00000354674 HMOX1P09601 288 aa12.96□□□□□ -0.33
SYNE1-203ENST00000354674 TMPOP42166 694 aaKnown RBP12.96□□□□□ -0.33
SYNE1-203ENST00000354674 TRMT2AQ8IZ69 625 aaKnown RBP12.96□□□□□ -0.33
SYNE1-203ENST00000354674 EYA1Q99502 592 aa12.96□□□□□ -0.33
SYNE1-203ENST00000354674 LMO7Q8WWI1 1683 aa12.96□□□□□ -0.34
SYNE1-203ENST00000354674 COL16A1Q07092 1604 aaPredicted RBP12.95□□□□□ -0.34
SYNE1-203ENST00000354674 MAPK8IP3Q9UPT6 1336 aa12.95□□□□□ -0.34
SYNE1-203ENST00000354674 TOM1O60784 492 aa12.95□□□□□ -0.34
SYNE1-203ENST00000354674 PHACTR3Q96KR7 559 aa12.95□□□□□ -0.34
SYNE1-203ENST00000354674 RGPD5Q99666 1765 aa12.94□□□□□ -0.34
SYNE1-203ENST00000354674 SULT6B1Q6IMI4 303 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms