RNA–Protein interactions for RNA: ENST00000349748.7

CAPN3-203, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-203ENST00000349748 CALCOCO1Q9P1Z2 691 aa13.03□□□□□ -0.32
CAPN3-203ENST00000349748 NINLQ9Y2I6 1382 aa13.03□□□□□ -0.32
CAPN3-203ENST00000349748 COL17A1Q9UMD9 1497 aaPredicted RBP13.03□□□□□ -0.32
CAPN3-203ENST00000349748 SHANK2Q9UPX8 1470 aa13.03□□□□□ -0.32
CAPN3-203ENST00000349748 ARAP3Q8WWN8 1544 aa13.02□□□□□ -0.32
CAPN3-203ENST00000349748 NCBP1Q09161 790 aaKnown RBP13.02□□□□□ -0.32
CAPN3-203ENST00000349748 EP400NLQ6ZTU2 488 aa13.02□□□□□ -0.32
CAPN3-203ENST00000349748 RWDD1Q9H446 243 aaPredicted RBP13.02□□□□□ -0.32
CAPN3-203ENST00000349748 DDX41Q9UJV9 622 aaKnown RBP13.02□□□□□ -0.33
CAPN3-203ENST00000349748 APAF1O14727 1248 aa13.02□□□□□ -0.33
CAPN3-203ENST00000349748 NAA30Q147X3 362 aaPredicted RBP13.02□□□□□ -0.33
CAPN3-203ENST00000349748 WWC1Q8IX03 1113 aa13.02□□□□□ -0.33
CAPN3-203ENST00000349748 TNNT3P45378 269 aaPredicted RBP13.01□□□□□ -0.33
CAPN3-203ENST00000349748 BCL2L13Q9BXK5 485 aa13.01□□□□□ -0.33
CAPN3-203ENST00000349748 HAP1P54257 671 aaPredicted RBP13.01□□□□□ -0.33
CAPN3-203ENST00000349748 POGZQ7Z3K3 1410 aa13.01□□□□□ -0.33
CAPN3-203ENST00000349748 ZNF518AQ6AHZ1 1483 aa13.01□□□□□ -0.33
CAPN3-203ENST00000349748 KDM5DQ9BY66 1539 aa13.01□□□□□ -0.33
CAPN3-203ENST00000349748 NEO1Q92859 1461 aa13□□□□□ -0.33
CAPN3-203ENST00000349748 CTIFO43310 598 aaKnown RBP13□□□□□ -0.33
CAPN3-203ENST00000349748 SPTLC3Q9NUV7 552 aa13□□□□□ -0.33
CAPN3-203ENST00000349748 PPRC1Q5VV67 1664 aaKnown RBP13□□□□□ -0.33
CAPN3-203ENST00000349748 ST7Q9NRC1 585 aa13□□□□□ -0.33
CAPN3-203ENST00000349748 GEMIN8Q9NWZ8 242 aaKnown RBP13□□□□□ -0.33
CAPN3-203ENST00000349748 CHAF1AQ13111 956 aaPredicted RBP12.99□□□□□ -0.33
CAPN3-203ENST00000349748 RSPH14Q9UHP6 348 aa12.99□□□□□ -0.33
CAPN3-203ENST00000349748 DIAPH3Q9NSV4 1193 aa12.99□□□□□ -0.33
CAPN3-203ENST00000349748 USP25Q9UHP3 1055 aa12.99□□□□□ -0.33
CAPN3-203ENST00000349748 PPP6R1Q9UPN7 881 aa12.99□□□□□ -0.33
CAPN3-203ENST00000349748 RGL3Q3MIN7 710 aa12.98□□□□□ -0.33
CAPN3-203ENST00000349748 CLGNO14967 610 aa12.98□□□□□ -0.33
CAPN3-203ENST00000349748 HNRNPH2P55795 449 aaKnown RBP12.98□□□□□ -0.33
CAPN3-203ENST00000349748 MORC2Q9Y6X9 1032 aaPredicted RBP12.98□□□□□ -0.33
CAPN3-203ENST00000349748 TRPM1Q7Z4N2 1603 aa12.98□□□□□ -0.33
CAPN3-203ENST00000349748 PRAG1Q86YV5 1406 aa12.98□□□□□ -0.33
CAPN3-203ENST00000349748 YEATS2Q9ULM3 1422 aa12.98□□□□□ -0.33
CAPN3-203ENST00000349748 YY1AP1Q9H869 796 aa12.97□□□□□ -0.33
CAPN3-203ENST00000349748 AK9Q5TCS8 1911 aa12.97□□□□□ -0.33
CAPN3-203ENST00000349748 ATP7AQ04656 1500 aa12.97□□□□□ -0.33
CAPN3-203ENST00000349748 RAD51AP2Q09MP3 1159 aa12.97□□□□□ -0.33
CAPN3-203ENST00000349748 FOXD4L5Q5VV16 416 aaPredicted RBP12.96□□□□□ -0.33
CAPN3-203ENST00000349748 KIF18AQ8NI77 898 aa12.96□□□□□ -0.33
CAPN3-203ENST00000349748 FOXD4L4Q8WXT5 416 aaPredicted RBP12.96□□□□□ -0.33
CAPN3-203ENST00000349748 TSPYL1Q9H0U9 437 aa12.96□□□□□ -0.33
CAPN3-203ENST00000349748 DISP3Q9P2K9 1392 aa12.96□□□□□ -0.33
CAPN3-203ENST00000349748 KIF16BQ96L93 1317 aa12.96□□□□□ -0.33
CAPN3-203ENST00000349748 CCDC144AA2RUR9 1427 aa12.96□□□□□ -0.33
CAPN3-203ENST00000349748 PYCARDQ9ULZ3 195 aa12.96□□□□□ -0.33
CAPN3-203ENST00000349748 ARHGAP31Q2M1Z3 1444 aa12.96□□□□□ -0.34
CAPN3-203ENST00000349748 ZFYVE16Q7Z3T8 1539 aa12.96□□□□□ -0.34
CAPN3-203ENST00000349748 SIRT1Q96EB6 747 aa12.96□□□□□ -0.34
CAPN3-203ENST00000349748 TSPY26PQ9H489 355 aa12.96□□□□□ -0.34
CAPN3-203ENST00000349748 FAM135AQ9P2D6 1515 aa12.95□□□□□ -0.34
CAPN3-203ENST00000349748 KRT222Q8N1A0 295 aa12.95□□□□□ -0.34
CAPN3-203ENST00000349748 PPP2R1AP30153 589 aa12.95□□□□□ -0.34
CAPN3-203ENST00000349748 EFCC1Q9HA90 598 aa12.95□□□□□ -0.34
CAPN3-203ENST00000349748 BCCIPQ9P287 314 aaKnown RBP eCLIP12.95□□□□□ -0.34
CAPN3-203ENST00000349748 TESK2Q96S53 571 aa12.94□□□□□ -0.34
CAPN3-203ENST00000349748 PLA2R1Q13018 1463 aa12.94□□□□□ -0.34
CAPN3-203ENST00000349748 ADCY5O95622 1261 aa12.94□□□□□ -0.34
CAPN3-203ENST00000349748 GYS2P54840 703 aa12.94□□□□□ -0.34
CAPN3-203ENST00000349748 CYP2E1P05181 493 aaPredicted RBP12.93□□□□□ -0.34
CAPN3-203ENST00000349748 GTF2A1P52655 376 aaPredicted RBP12.93□□□□□ -0.34
CAPN3-203ENST00000349748 DUOX2Q9NRD8 1548 aa12.93□□□□□ -0.34
CAPN3-203ENST00000349748 NOP2P46087 812 aaKnown RBP12.93□□□□□ -0.34
CAPN3-203ENST00000349748 NUCB2P80303 420 aa12.93□□□□□ -0.34
CAPN3-203ENST00000349748 A2MP01023 1474 aa12.93□□□□□ -0.34
CAPN3-203ENST00000349748 NPC1L1Q9UHC9 1359 aa12.92□□□□□ -0.34
CAPN3-203ENST00000349748 PATL2C9JE40 543 aaKnown RBP12.92□□□□□ -0.34
CAPN3-203ENST00000349748 RARSP54136 660 aaKnown RBP12.92□□□□□ -0.34
CAPN3-203ENST00000349748 PLCB2Q00722 1185 aa12.92□□□□□ -0.34
CAPN3-203ENST00000349748 KIAA1524Q8TCG1 905 aa12.92□□□□□ -0.34
CAPN3-203ENST00000349748 CFAP74Q9C0B2 1584 aa12.92□□□□□ -0.34
CAPN3-203ENST00000349748 DHX16O60231 1041 aaKnown RBP12.92□□□□□ -0.34
CAPN3-203ENST00000349748 FAM193AP78312 1265 aa12.92□□□□□ -0.34
CAPN3-203ENST00000349748 MAST1Q9Y2H9 1570 aa12.91□□□□□ -0.34
CAPN3-203ENST00000349748 KCNF1Q9H3M0 494 aa12.91□□□□□ -0.34
CAPN3-203ENST00000349748 ZGPATQ8N5A5 531 aaKnown RBP12.91□□□□□ -0.34
CAPN3-203ENST00000349748 TOMM22Q9NS69 142 aa12.91□□□□□ -0.34
CAPN3-203ENST00000349748 ZDHHC9Q9Y397 364 aa12.91□□□□□ -0.34
CAPN3-203ENST00000349748 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.9□□□□□ -0.34
CAPN3-203ENST00000349748 GPRASP1Q5JY77 1395 aa12.9□□□□□ -0.34
CAPN3-203ENST00000349748 MLH3Q9UHC1 1453 aa12.9□□□□□ -0.34
CAPN3-203ENST00000349748 ERBINQ96RT1 1412 aa12.9□□□□□ -0.34
CAPN3-203ENST00000349748 TRIM66O15016 1216 aa12.9□□□□□ -0.35
CAPN3-203ENST00000349748 KANK1Q14678 1352 aa12.9□□□□□ -0.35
CAPN3-203ENST00000349748 LNPKQ9C0E8 428 aa12.9□□□□□ -0.35
CAPN3-203ENST00000349748 KMT5BQ4FZB7 885 aa12.89□□□□□ -0.35
CAPN3-203ENST00000349748 CT47A1Q5JQC4 288 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-203ENST00000349748 PRDM15P57071 1507 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-203ENST00000349748 CYP2C19P33261 490 aa12.89□□□□□ -0.35
CAPN3-203ENST00000349748 NFATC2IPQ8NCF5 419 aa12.89□□□□□ -0.35
CAPN3-203ENST00000349748 RASSF4Q9H2L5 321 aa12.89□□□□□ -0.35
CAPN3-203ENST00000349748 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.89□□□□□ -0.35
CAPN3-203ENST00000349748 V9GYY5 206 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-203ENST00000349748 KIDINS220Q9ULH0 1771 aa12.89□□□□□ -0.35
CAPN3-203ENST00000349748 LMOD3Q0VAK6 560 aa12.88□□□□□ -0.35
CAPN3-203ENST00000349748 NEUROD2Q15784 382 aa12.88□□□□□ -0.35
CAPN3-203ENST00000349748 TPRNQ4KMQ1 711 aa12.88□□□□□ -0.35
CAPN3-203ENST00000349748 C10orf67Q8IYJ2 551 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms