RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZGPATQ8N5A5 531 aaKnown RBP8.38□□□□□ -1.07
VPS39-202ENST00000348544 A0A0U1RQG5 324 aaPredicted RBP8.37□□□□□ -1.07
VPS39-202ENST00000348544 SYCE3A1L190 88 aa8.37□□□□□ -1.07
VPS39-202ENST00000348544 RABEP1Q15276 862 aa8.37□□□□□ -1.07
VPS39-202ENST00000348544 LRSAM1Q6UWE0 723 aa8.37□□□□□ -1.07
VPS39-202ENST00000348544 GCC1Q96CN9 775 aa8.37□□□□□ -1.07
VPS39-202ENST00000348544 VWDEQ8N2E2 1590 aa8.37□□□□□ -1.07
VPS39-202ENST00000348544 COL3A1P02461 1466 aaPredicted RBP8.37□□□□□ -1.07
VPS39-202ENST00000348544 IL16Q14005 1332 aa8.37□□□□□ -1.07
VPS39-202ENST00000348544 IPO8O15397 1037 aaKnown RBP8.37□□□□□ -1.07
VPS39-202ENST00000348544 ZSCAN20P17040 1043 aaPredicted RBP8.37□□□□□ -1.07
VPS39-202ENST00000348544 CCDC94Q9BW85 323 aaPredicted RBP8.37□□□□□ -1.07
VPS39-202ENST00000348544 CCDC39Q9UFE4 941 aa8.37□□□□□ -1.07
VPS39-202ENST00000348544 TRAK1Q9UPV9 953 aa8.37□□□□□ -1.07
VPS39-202ENST00000348544 DMTNQ08495 405 aa8.36□□□□□ -1.07
VPS39-202ENST00000348544 ZNF710Q8N1W2 664 aa8.36□□□□□ -1.07
VPS39-202ENST00000348544 TSC1Q92574 1164 aa8.36□□□□□ -1.07
VPS39-202ENST00000348544 ZFYVE16Q7Z3T8 1539 aa8.36□□□□□ -1.07
VPS39-202ENST00000348544 REREQ9P2R6 1566 aa8.36□□□□□ -1.07
VPS39-202ENST00000348544 U2SURPO15042 1029 aaKnown RBP8.36□□□□□ -1.07
VPS39-202ENST00000348544 RNF214Q8ND24 703 aa8.36□□□□□ -1.07
VPS39-202ENST00000348544 PLCH2O75038 1416 aa8.36□□□□□ -1.07
VPS39-202ENST00000348544 SETBP1Q9Y6X0 1596 aa8.36□□□□□ -1.07
VPS39-202ENST00000348544 ALDH1L2Q3SY69 923 aa8.36□□□□□ -1.07
VPS39-202ENST00000348544 UTP14CQ5TAP6 766 aaKnown RBP8.36□□□□□ -1.07
VPS39-202ENST00000348544 USP26Q9BXU7 913 aa8.36□□□□□ -1.07
VPS39-202ENST00000348544 PIK3R4Q99570 1358 aa8.35□□□□□ -1.07
VPS39-202ENST00000348544 DCAF8L1A6NGE4 600 aa8.35□□□□□ -1.07
VPS39-202ENST00000348544 MYRIPQ8NFW9 859 aa8.35□□□□□ -1.07
VPS39-202ENST00000348544 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS39-202ENST00000348544 ADGRB1O14514 1584 aa8.35□□□□□ -1.07
VPS39-202ENST00000348544 KIF1BO60333 1816 aa8.35□□□□□ -1.07
VPS39-202ENST00000348544 ZBTB7CA1YPR0 619 aa8.35□□□□□ -1.07
VPS39-202ENST00000348544 PLEKHM2Q8IWE5 1019 aa8.35□□□□□ -1.07
VPS39-202ENST00000348544 NSD2O96028 1365 aa8.34□□□□□ -1.07
VPS39-202ENST00000348544 SPAG9O60271 1321 aaKnown RBP8.34□□□□□ -1.07
VPS39-202ENST00000348544 AFAP1Q8N556 730 aa8.34□□□□□ -1.07
VPS39-202ENST00000348544 ANKRD36BQ8N2N9 1353 aa8.34□□□□□ -1.07
VPS39-202ENST00000348544 KNDC1Q76NI1 1749 aa8.34□□□□□ -1.07
VPS39-202ENST00000348544 PTCH1Q13635 1447 aa8.34□□□□□ -1.07
VPS39-202ENST00000348544 TULP4Q9NRJ4 1543 aa8.34□□□□□ -1.07
VPS39-202ENST00000348544 BRPF1P55201 1214 aaPredicted RBP8.34□□□□□ -1.07
VPS39-202ENST00000348544 TMEM132EQ6IEE7 984 aa8.34□□□□□ -1.07
VPS39-202ENST00000348544 CWC22Q9HCG8 908 aaKnown RBP8.34□□□□□ -1.07
VPS39-202ENST00000348544 MROH1Q8NDA8 1641 aa8.34□□□□□ -1.07
VPS39-202ENST00000348544 KIAA2012Q0VF49 1180 aa8.33□□□□□ -1.08
VPS39-202ENST00000348544 EFCAB2Q5VUJ9 269 aa8.33□□□□□ -1.08
VPS39-202ENST00000348544 FOXD4L5Q5VV16 416 aaPredicted RBP8.33□□□□□ -1.08
VPS39-202ENST00000348544 MRPL50Q8N5N7 158 aaKnown RBP8.33□□□□□ -1.08
VPS39-202ENST00000348544 FOXD4L4Q8WXT5 416 aaPredicted RBP8.33□□□□□ -1.08
VPS39-202ENST00000348544 TTC22Q5TAA0 569 aa8.33□□□□□ -1.08
VPS39-202ENST00000348544 C16orf71Q8IYS4 520 aaPredicted RBP8.33□□□□□ -1.08
VPS39-202ENST00000348544 MPNDQ8N594 471 aa8.33□□□□□ -1.08
VPS39-202ENST00000348544 OTUD7AQ8TE49 926 aaPredicted RBP8.33□□□□□ -1.08
VPS39-202ENST00000348544 ATAD2Q6PL18 1390 aa8.32□□□□□ -1.08
VPS39-202ENST00000348544 FAM177BA6PVY3 158 aa8.32□□□□□ -1.08
VPS39-202ENST00000348544 ABCC4O15439 1325 aa8.32□□□□□ -1.08
VPS39-202ENST00000348544 ATP2B3Q16720 1220 aa8.32□□□□□ -1.08
VPS39-202ENST00000348544 C17orf53Q8N3J3 647 aaPredicted RBP8.32□□□□□ -1.08
VPS39-202ENST00000348544 TSPYL6Q8N831 410 aa8.32□□□□□ -1.08
VPS39-202ENST00000348544 ZNF830Q96NB3 372 aaPredicted RBP8.32□□□□□ -1.08
VPS39-202ENST00000348544 ADGRB3O60242 1522 aa8.32□□□□□ -1.08
VPS39-202ENST00000348544 VAMP4O75379 141 aa8.31□□□□□ -1.08
VPS39-202ENST00000348544 PTMAP06454 111 aaKnown RBP8.31□□□□□ -1.08
VPS39-202ENST00000348544 GTF2F1P35269 517 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS39-202ENST00000348544 CBX1P83916 185 aa8.31□□□□□ -1.08
VPS39-202ENST00000348544 GGNBP2Q9H3C7 697 aa8.31□□□□□ -1.08
VPS39-202ENST00000348544 C14orf93Q9H972 538 aaKnown RBP8.31□□□□□ -1.08
VPS39-202ENST00000348544 KIF3BO15066 747 aa8.31□□□□□ -1.08
VPS39-202ENST00000348544 TSPY26PQ9H489 355 aa8.31□□□□□ -1.08
VPS39-202ENST00000348544 EFCAB6Q5THR3 1501 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 LRRC7Q96NW7 1537 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 A0A1W2PP64 1363 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 MBD3O95983 291 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 PIBF1Q8WXW3 757 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 ARHGAP45Q92619 1136 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 PRIMPOLQ96LW4 560 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 CABP2Q9NPB3 220 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 ST18O60284 1047 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 SDSP20132 328 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 HMGN5P82970 282 aaKnown RBP8.3□□□□□ -1.08
VPS39-202ENST00000348544 DNTTIP2Q5QJE6 756 aaKnown RBP8.3□□□□□ -1.08
VPS39-202ENST00000348544 INTS3Q68E01 1043 aaKnown RBP8.3□□□□□ -1.08
VPS39-202ENST00000348544 THUMPD2Q9BTF0 503 aaKnown RBP8.3□□□□□ -1.08
VPS39-202ENST00000348544 PPLO60437 1756 aa8.3□□□□□ -1.08
VPS39-202ENST00000348544 NOLC1Q14978 699 aaKnown RBP eCLIP8.29□□□□□ -1.08
VPS39-202ENST00000348544 DCTPP1Q9H773 170 aa8.29□□□□□ -1.08
VPS39-202ENST00000348544 YEATS2Q9ULM3 1422 aa8.29□□□□□ -1.08
VPS39-202ENST00000348544 ATP7AQ04656 1500 aa8.29□□□□□ -1.08
VPS39-202ENST00000348544 GADD45BO75293 160 aaPredicted RBP8.29□□□□□ -1.08
VPS39-202ENST00000348544 BRD1O95696 1058 aa8.29□□□□□ -1.08
VPS39-202ENST00000348544 PPP4R3BQ5MIZ7 849 aa8.29□□□□□ -1.08
VPS39-202ENST00000348544 ZNF428Q96B54 188 aa8.29□□□□□ -1.08
VPS39-202ENST00000348544 CHMP4BQ9H444 224 aaKnown RBP8.29□□□□□ -1.08
VPS39-202ENST00000348544 TTC12Q9H892 705 aaPredicted RBP8.29□□□□□ -1.08
VPS39-202ENST00000348544 ARHGEF28Q8N1W1 1705 aaKnown RBP8.29□□□□□ -1.08
VPS39-202ENST00000348544 GLI2P10070 1586 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 ERCC6L2Q5T890 1561 aa8.28□□□□□ -1.08
VPS39-202ENST00000348544 ELL2O00472 640 aaPredicted RBP8.28□□□□□ -1.08
VPS39-202ENST00000348544 TMX3Q96JJ7 454 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 74.5 ms