RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 CEP57L1Q8IYX8 460 aa20.64■□□□□ 0.9
SMAD4-201ENST00000342988 MKRN1Q9UHC7 482 aaKnown RBP20.64■□□□□ 0.9
SMAD4-201ENST00000342988 TMEM87AQ8NBN3 555 aa20.64■□□□□ 0.9
SMAD4-201ENST00000342988 NAA15Q9BXJ9 866 aaKnown RBP20.64■□□□□ 0.9
SMAD4-201ENST00000342988 TSHZ2Q9NRE2 1034 aa20.64■□□□□ 0.89
SMAD4-201ENST00000342988 CLGNO14967 610 aa20.63■□□□□ 0.89
SMAD4-201ENST00000342988 RNF214Q8ND24 703 aa20.63■□□□□ 0.89
SMAD4-201ENST00000342988 IKBKGQ9Y6K9 419 aa20.63■□□□□ 0.89
SMAD4-201ENST00000342988 CASQ1P31415 396 aa20.63■□□□□ 0.89
SMAD4-201ENST00000342988 EIF2S2P20042 333 aaKnown RBP20.63■□□□□ 0.89
SMAD4-201ENST00000342988 PIBF1Q8WXW3 757 aa20.63■□□□□ 0.89
SMAD4-201ENST00000342988 SPDYE4A6NLX3 237 aa20.63■□□□□ 0.89
SMAD4-201ENST00000342988 MRPS9P82933 396 aaKnown RBP20.63■□□□□ 0.89
SMAD4-201ENST00000342988 KIF5CO60282 957 aa20.62■□□□□ 0.89
SMAD4-201ENST00000342988 LARP1Q6PKG0 1096 aaKnown RBP20.62■□□□□ 0.89
SMAD4-201ENST00000342988 EIF5P55010 431 aaKnown RBP20.62■□□□□ 0.89
SMAD4-201ENST00000342988 SWAP70Q9UH65 585 aa20.62■□□□□ 0.89
SMAD4-201ENST00000342988 GGT6Q6P531 493 aa20.62■□□□□ 0.89
SMAD4-201ENST00000342988 NEUROD6Q96NK8 337 aa20.62■□□□□ 0.89
SMAD4-201ENST00000342988 CCDC83Q8IWF9 413 aa20.62■□□□□ 0.89
SMAD4-201ENST00000342988 ME1P48163 572 aa20.62■□□□□ 0.89
SMAD4-201ENST00000342988 CEP131Q9UPN4 1083 aa20.62■□□□□ 0.89
SMAD4-201ENST00000342988 POTEB2H3BUK9 544 aa20.61■□□□□ 0.89
SMAD4-201ENST00000342988 ZSCAN12O43309 604 aa20.61■□□□□ 0.89
SMAD4-201ENST00000342988 RRP1P56182 461 aaKnown RBP20.61■□□□□ 0.89
SMAD4-201ENST00000342988 ANAPC4Q9UJX5 808 aa20.61■□□□□ 0.89
SMAD4-201ENST00000342988 CDC45O75419 566 aa20.61■□□□□ 0.89
SMAD4-201ENST00000342988 RNF187Q5TA31 235 aaPredicted RBP20.61■□□□□ 0.89
SMAD4-201ENST00000342988 TRAK2O60296 914 aa20.61■□□□□ 0.89
SMAD4-201ENST00000342988 CTNNA2P26232 953 aa20.61■□□□□ 0.89
SMAD4-201ENST00000342988 FKBP5Q13451 457 aaPredicted RBP20.61■□□□□ 0.89
SMAD4-201ENST00000342988 ANKS4BQ8N8V4 417 aa20.61■□□□□ 0.89
SMAD4-201ENST00000342988 KIF6Q6ZMV9 814 aa20.6■□□□□ 0.89
SMAD4-201ENST00000342988 BCL2L13Q9BXK5 485 aa20.6■□□□□ 0.89
SMAD4-201ENST00000342988 NACAP1Q9BZK3 213 aa20.6■□□□□ 0.89
SMAD4-201ENST00000342988 MTMR7Q9Y216 660 aa20.6■□□□□ 0.89
SMAD4-201ENST00000342988 CCDC160A6NGH7 325 aa20.6■□□□□ 0.89
SMAD4-201ENST00000342988 CCDC69A6NI79 296 aa20.6■□□□□ 0.89
SMAD4-201ENST00000342988 PPP1R14CQ8TAE6 165 aa20.6■□□□□ 0.89
SMAD4-201ENST00000342988 SEPT10Q9P0V9 454 aa20.59■□□□□ 0.89
SMAD4-201ENST00000342988 EVC2Q86UK5 1308 aa20.59■□□□□ 0.89
SMAD4-201ENST00000342988 ANKRD30AQ9BXX3 1397 aa20.59■□□□□ 0.89
SMAD4-201ENST00000342988 NFKBIBQ15653 356 aa20.59■□□□□ 0.89
SMAD4-201ENST00000342988 TMCO5BA8MYB1 307 aa20.58■□□□□ 0.89
SMAD4-201ENST00000342988 PPP1R9BQ96SB3 815 aa20.58■□□□□ 0.89
SMAD4-201ENST00000342988 RBM10P98175 930 aaKnown RBP20.58■□□□□ 0.89
SMAD4-201ENST00000342988 RIC3Q7Z5B4 369 aa20.58■□□□□ 0.89
SMAD4-201ENST00000342988 KLHL34Q8N239 644 aa20.58■□□□□ 0.89
SMAD4-201ENST00000342988 KRT85P78386 507 aa20.57■□□□□ 0.88
SMAD4-201ENST00000342988 SLC4A3P48751 1232 aa20.57■□□□□ 0.88
SMAD4-201ENST00000342988 CCDC178Q5BJE1 867 aa20.57■□□□□ 0.88
SMAD4-201ENST00000342988 ATP2B2Q01814 1243 aa20.57■□□□□ 0.88
SMAD4-201ENST00000342988 PKD2Q13563 968 aa20.57■□□□□ 0.88
SMAD4-201ENST00000342988 ZBED9Q6R2W3 1325 aa20.57■□□□□ 0.88
SMAD4-201ENST00000342988 FAM114A2Q9NRY5 505 aa20.56■□□□□ 0.88
SMAD4-201ENST00000342988 SPECC1Q5M775 1068 aa20.56■□□□□ 0.88
SMAD4-201ENST00000342988 FSD1Q9BTV5 496 aa20.56■□□□□ 0.88
SMAD4-201ENST00000342988 NSRP1Q9H0G5 558 aaKnown RBP20.56■□□□□ 0.88
SMAD4-201ENST00000342988 HSPA4P34932 840 aa20.56■□□□□ 0.88
SMAD4-201ENST00000342988 FKBP15Q5T1M5 1219 aa20.56■□□□□ 0.88
SMAD4-201ENST00000342988 KIF18AQ8NI77 898 aa20.56■□□□□ 0.88
SMAD4-201ENST00000342988 IPO4Q8TEX9 1081 aaKnown RBP20.56■□□□□ 0.88
SMAD4-201ENST00000342988 WASF1Q92558 559 aa20.56■□□□□ 0.88
SMAD4-201ENST00000342988 TSG101Q99816 390 aa20.56■□□□□ 0.88
SMAD4-201ENST00000342988 RB1CC1Q8TDY2 1594 aa20.55■□□□□ 0.88
SMAD4-201ENST00000342988 FERMT2Q96AC1 680 aa20.55■□□□□ 0.88
SMAD4-201ENST00000342988 ZNF76P36508 570 aa20.55■□□□□ 0.88
SMAD4-201ENST00000342988 FBF1Q8TES7 1133 aa20.55■□□□□ 0.88
SMAD4-201ENST00000342988 ODF2LQ9ULJ1 636 aa20.55■□□□□ 0.88
SMAD4-201ENST00000342988 WDR33Q9C0J8 1336 aaKnown RBP20.55■□□□□ 0.88
SMAD4-201ENST00000342988 MAP7D1Q3KQU3 841 aa20.55■□□□□ 0.88
SMAD4-201ENST00000342988 CGNQ9P2M7 1197 aaKnown RBP20.55■□□□□ 0.88
SMAD4-201ENST00000342988 FOXD1Q16676 465 aa20.54■□□□□ 0.88
SMAD4-201ENST00000342988 CTNNBL1Q8WYA6 563 aaPredicted RBP20.54■□□□□ 0.88
SMAD4-201ENST00000342988 PAFAH1B1P43034 410 aa20.54■□□□□ 0.88
SMAD4-201ENST00000342988 WDHD1O75717 1129 aaPredicted RBP20.54■□□□□ 0.88
SMAD4-201ENST00000342988 UBTFL1P0CB47 393 aaPredicted RBP20.54■□□□□ 0.88
SMAD4-201ENST00000342988 NUP155O75694 1391 aa20.54■□□□□ 0.88
SMAD4-201ENST00000342988 ZFYP08048 801 aaPredicted RBP20.54■□□□□ 0.88
SMAD4-201ENST00000342988 ATP2B1P20020 1258 aa20.54■□□□□ 0.88
SMAD4-201ENST00000342988 CTR9Q6PD62 1173 aa20.54■□□□□ 0.88
SMAD4-201ENST00000342988 DNAAF4Q8WXU2 420 aa20.54■□□□□ 0.88
SMAD4-201ENST00000342988 CARMIL2Q6F5E8 1435 aa20.53■□□□□ 0.88
SMAD4-201ENST00000342988 KIF5AQ12840 1032 aa20.53■□□□□ 0.88
SMAD4-201ENST00000342988 MYO10Q9HD67 2058 aa20.53■□□□□ 0.88
SMAD4-201ENST00000342988 USO1O60763 962 aaKnown RBP20.53■□□□□ 0.88
SMAD4-201ENST00000342988 ALS2CR12Q96Q35 445 aa20.53■□□□□ 0.88
SMAD4-201ENST00000342988 CPSF2Q9P2I0 782 aaKnown RBP20.53■□□□□ 0.88
SMAD4-201ENST00000342988 CEP112Q8N8E3 955 aa20.53■□□□□ 0.88
SMAD4-201ENST00000342988 CEP83Q9Y592 693 aa20.53■□□□□ 0.88
SMAD4-201ENST00000342988 RRBP1Q9P2E9 1410 aaKnown RBP20.52■□□□□ 0.88
SMAD4-201ENST00000342988 CETN1Q12798 172 aa20.52■□□□□ 0.88
SMAD4-201ENST00000342988 ZSCAN25Q6NSZ9 544 aa20.52■□□□□ 0.88
SMAD4-201ENST00000342988 MIA2Q96PC5 1412 aa20.52■□□□□ 0.88
SMAD4-201ENST00000342988 FIBPO43427 364 aa20.51■□□□□ 0.87
SMAD4-201ENST00000342988 MNAT1P51948 309 aa20.51■□□□□ 0.87
SMAD4-201ENST00000342988 UPF3BQ9BZI7 483 aaKnown RBP20.51■□□□□ 0.87
SMAD4-201ENST00000342988 CFAP58Q5T655 872 aa20.51■□□□□ 0.87
SMAD4-201ENST00000342988 FILIP1Q7Z7B0 1213 aa20.51■□□□□ 0.87
SMAD4-201ENST00000342988 CRBNQ96SW2 442 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms