RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 MBD3O95983 291 aa15.02■□□□□ -0
SNRNP48-201ENST00000342415 CSPP1Q1MSJ5 1256 aa15.02■□□□□ -0
SNRNP48-201ENST00000342415 KDM5BQ9UGL1 1544 aa15.02■□□□□ -0
SNRNP48-201ENST00000342415 UQCRHLA0A096LP55 91 aa15.02□□□□□ -0.01
SNRNP48-201ENST00000342415 UQCRHP07919 91 aa15.02□□□□□ -0.01
SNRNP48-201ENST00000342415 GORABQ5T7V8 394 aa15.02□□□□□ -0.01
SNRNP48-201ENST00000342415 CWC27Q6UX04 472 aaKnown RBP15.02□□□□□ -0.01
SNRNP48-201ENST00000342415 CCDC39Q9UFE4 941 aa15.02□□□□□ -0.01
SNRNP48-201ENST00000342415 NRDCO43847 1150 aa15.02□□□□□ -0.01
SNRNP48-201ENST00000342415 GNAI3P08754 354 aa15.02□□□□□ -0.01
SNRNP48-201ENST00000342415 PKNOX2Q96KN3 472 aa15.02□□□□□ -0.01
SNRNP48-201ENST00000342415 BECN2A8MW95 431 aa15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 HDGFL1Q5TGJ6 251 aa15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 FERMT3Q86UX7 667 aa15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 MEIS3Q99687 375 aa15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 STK3Q13188 491 aa15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 SF3A1Q15459 793 aaKnown RBP15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 CWC22Q9HCG8 908 aaKnown RBP15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 POLR3AO14802 1390 aaPredicted RBP15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 RPAP2Q8IXW5 612 aaPredicted RBP15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 SMC5Q8IY18 1101 aa15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 ZGPATQ8N5A5 531 aaKnown RBP15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 NUDT16Q96DE0 195 aaKnown RBP15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 IFT57Q9NWB7 429 aa15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 SLC52A1Q9NWF4 448 aa15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 ISY1Q9ULR0 285 aaKnown RBP15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 PIK3C2GO75747 1445 aa15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 GCC2Q8IWJ2 1684 aa15.01□□□□□ -0.01
SNRNP48-201ENST00000342415 OTUD7AQ8TE49 926 aaPredicted RBP15□□□□□ -0.01
SNRNP48-201ENST00000342415 RTEL1-TNFRSF6BF6WH68 1400 aa15□□□□□ -0.01
SNRNP48-201ENST00000342415 GOLGA6L19H0YKK7 550 aa15□□□□□ -0.01
SNRNP48-201ENST00000342415 TPM2P07951 284 aa15□□□□□ -0.01
SNRNP48-201ENST00000342415 SDSP20132 328 aa15□□□□□ -0.01
SNRNP48-201ENST00000342415 RUFY2Q8WXA3 655 aa15□□□□□ -0.01
SNRNP48-201ENST00000342415 SIL1Q9H173 461 aa15□□□□□ -0.01
SNRNP48-201ENST00000342415 BCORL1Q5H9F3 1711 aa14.99□□□□□ -0.01
SNRNP48-201ENST00000342415 CLCN1P35523 988 aa14.99□□□□□ -0.01
SNRNP48-201ENST00000342415 AEBP1Q8IUX7 1158 aa14.99□□□□□ -0.01
SNRNP48-201ENST00000342415 NCKAP5LQ9HCH0 1330 aa14.99□□□□□ -0.01
SNRNP48-201ENST00000342415 SRGAP3O43295 1099 aa14.99□□□□□ -0.01
SNRNP48-201ENST00000342415 CCDC30Q5VVM6 783 aa14.99□□□□□ -0.01
SNRNP48-201ENST00000342415 KDM4AO75164 1064 aa14.99□□□□□ -0.01
SNRNP48-201ENST00000342415 CLASRPQ8N2M8 674 aaKnown RBP14.98□□□□□ -0.01
SNRNP48-201ENST00000342415 KDM5CP41229 1560 aa14.98□□□□□ -0.01
SNRNP48-201ENST00000342415 ZNF521Q96K83 1311 aa14.98□□□□□ -0.01
SNRNP48-201ENST00000342415 G3BP1Q13283 466 aaKnown RBP eCLIP14.98□□□□□ -0.01
SNRNP48-201ENST00000342415 CCDC61Q9Y6R9 512 aa14.98□□□□□ -0.01
SNRNP48-201ENST00000342415 ADAMTS12P58397 1594 aa14.98□□□□□ -0.01
SNRNP48-201ENST00000342415 NPHP1O15259 732 aa14.98□□□□□ -0.01
SNRNP48-201ENST00000342415 RRP9O43818 475 aaKnown RBP14.98□□□□□ -0.01
SNRNP48-201ENST00000342415 VAMP4O75379 141 aa14.97□□□□□ -0.01
SNRNP48-201ENST00000342415 CHAMP1Q96JM3 812 aa14.97□□□□□ -0.01
SNRNP48-201ENST00000342415 ZNF830Q96NB3 372 aaPredicted RBP14.97□□□□□ -0.01
SNRNP48-201ENST00000342415 TRIM35Q9UPQ4 493 aa14.97□□□□□ -0.01
SNRNP48-201ENST00000342415 RPGRIP1LQ68CZ1 1315 aa14.97□□□□□ -0.01
SNRNP48-201ENST00000342415 C1orf141Q5JVX7 400 aa14.97□□□□□ -0.01
SNRNP48-201ENST00000342415 PRDM10Q9NQV6 1147 aa14.97□□□□□ -0.01
SNRNP48-201ENST00000342415 HTATSF1O43719 755 aaKnown RBP14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 ABTB2Q8N961 1025 aa14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 USP25Q9UHP3 1055 aa14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 CDK11BP21127 795 aaKnown RBP14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 ZSCAN23Q3MJ62 389 aa14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 CNTROBQ8N137 903 aa14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 POLKQ9UBT6 870 aa14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 ADGRL1O94910 1474 aa14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 ADGRL2O95490 1459 aa14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 CREBRFQ8IUR6 639 aa14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 TRIM5Q9C035 493 aa14.96□□□□□ -0.01
SNRNP48-201ENST00000342415 MX1P20591 662 aa14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 PRIM1P49642 420 aaKnown RBP14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 KLHL40Q2TBA0 621 aa14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 TTC22Q5TAA0 569 aa14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 ITSN2Q9NZM3 1697 aa14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 CCT4P50991 539 aaKnown RBP14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 USHBP1Q8N6Y0 703 aa14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 FSD1Q9BTV5 496 aa14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 CAMK4Q16566 473 aa14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 NUP160Q12769 1436 aa14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 ABCC11Q96J66 1382 aa14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 TRMT2AQ8IZ69 625 aaKnown RBP14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 MRPL50Q8N5N7 158 aaKnown RBP14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 SPG7Q9UQ90 795 aa14.95□□□□□ -0.02
SNRNP48-201ENST00000342415 MCM2P49736 904 aa14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 HSP90AB2PQ58FF8 381 aa14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 FMNL2Q96PY5 1086 aa14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 LRRFIP2Q9Y608 721 aaKnown RBP14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 TULP1O00294 542 aaPredicted RBP14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 ANXA1P04083 346 aa14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 RAB3GAP1Q15042 981 aa14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 NEUROD6Q96NK8 337 aa14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 CCDC83Q8IWF9 413 aa14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 RBM33Q96EV2 1170 aaKnown RBP14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 JAKMIP1Q96N16 626 aaKnown RBP14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 TOMM22Q9NS69 142 aa14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 ABCA5Q8WWZ7 1642 aa14.94□□□□□ -0.02
SNRNP48-201ENST00000342415 ZBTB7BO15156 539 aaPredicted RBP14.93□□□□□ -0.02
SNRNP48-201ENST00000342415 SASS6Q6UVJ0 657 aa14.93□□□□□ -0.02
SNRNP48-201ENST00000342415 WDR33Q9C0J8 1336 aaKnown RBP14.93□□□□□ -0.02
SNRNP48-201ENST00000342415 TAF7LQ5H9L4 462 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms