RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 HDGFL2Q7Z4V5 671 aaPredicted RBP27.9■■■□□ 2.06
TRIM28-202ENST00000341753 NCKAP5LQ9HCH0 1330 aa27.89■■■□□ 2.06
TRIM28-202ENST00000341753 A2ML1A8K2U0 1454 aa27.89■■■□□ 2.06
TRIM28-202ENST00000341753 BMP2KLQ5H9B9 411 aa27.89■■■□□ 2.05
TRIM28-202ENST00000341753 TBC1D9Q6ZT07 1266 aa27.89■■■□□ 2.05
TRIM28-202ENST00000341753 RIMS2Q9UQ26 1411 aa27.88■■■□□ 2.05
TRIM28-202ENST00000341753 CIZ1Q9ULV3 898 aaPredicted RBP27.88■■■□□ 2.05
TRIM28-202ENST00000341753 GAS2L2Q8NHY3 880 aa27.87■■■□□ 2.05
TRIM28-202ENST00000341753 THUMPD2Q9BTF0 503 aaKnown RBP27.87■■■□□ 2.05
TRIM28-202ENST00000341753 TXNDC2Q86VQ3 553 aa27.87■■■□□ 2.05
TRIM28-202ENST00000341753 ARHGEF40Q8TER5 1519 aa27.86■■■□□ 2.05
TRIM28-202ENST00000341753 ELL2O00472 640 aaPredicted RBP27.86■■■□□ 2.05
TRIM28-202ENST00000341753 K7ELQ4 463 aaPredicted RBP27.86■■■□□ 2.05
TRIM28-202ENST00000341753 ISY1Q9ULR0 285 aaKnown RBP27.85■■■□□ 2.05
TRIM28-202ENST00000341753 PPIP5K1Q6PFW1 1433 aa27.85■■■□□ 2.05
TRIM28-202ENST00000341753 IL16Q14005 1332 aa27.85■■■□□ 2.05
TRIM28-202ENST00000341753 ZRANB1Q9UGI0 708 aa27.85■■■□□ 2.05
TRIM28-202ENST00000341753 DIAPH1O60610 1272 aaKnown RBP27.84■■■□□ 2.05
TRIM28-202ENST00000341753 COL3A1P02461 1466 aaPredicted RBP27.83■■■□□ 2.05
TRIM28-202ENST00000341753 ZBTB7BO15156 539 aaPredicted RBP27.83■■■□□ 2.04
TRIM28-202ENST00000341753 VSIG10Q8N0Z9 540 aa27.83■■■□□ 2.04
TRIM28-202ENST00000341753 SKOR2Q2VWA4 1001 aaPredicted RBP27.82■■■□□ 2.04
TRIM28-202ENST00000341753 METP08581 1390 aa27.81■■■□□ 2.04
TRIM28-202ENST00000341753 TSPYL6Q8N831 410 aa27.81■■■□□ 2.04
TRIM28-202ENST00000341753 ESF1Q9H501 851 aaKnown RBP27.81■■■□□ 2.04
TRIM28-202ENST00000341753 ALDH1L2Q3SY69 923 aa27.8■■■□□ 2.04
TRIM28-202ENST00000341753 SIRT2Q8IXJ6 389 aa27.8■■■□□ 2.04
TRIM28-202ENST00000341753 GLIPR1L2Q4G1C9 344 aa27.8■■■□□ 2.04
TRIM28-202ENST00000341753 PRKAR2BP31323 418 aa27.79■■■□□ 2.04
TRIM28-202ENST00000341753 DDX49Q9Y6V7 483 aaKnown RBP27.78■■■□□ 2.04
TRIM28-202ENST00000341753 HMOX1P09601 288 aa27.78■■■□□ 2.04
TRIM28-202ENST00000341753 NME9Q86XW9 330 aa27.78■■■□□ 2.04
TRIM28-202ENST00000341753 RRP9O43818 475 aaKnown RBP27.77■■■□□ 2.04
TRIM28-202ENST00000341753 PLPPR3Q6T4P5 718 aa27.77■■■□□ 2.04
TRIM28-202ENST00000341753 AGLP35573 1532 aa27.77■■■□□ 2.04
TRIM28-202ENST00000341753 NASPP49321 788 aaPredicted RBP27.77■■■□□ 2.04
TRIM28-202ENST00000341753 POLKQ9UBT6 870 aa27.77■■■□□ 2.04
TRIM28-202ENST00000341753 GCC1Q96CN9 775 aa27.76■■■□□ 2.04
TRIM28-202ENST00000341753 EMILIN1Q9Y6C2 1016 aa27.76■■■□□ 2.04
TRIM28-202ENST00000341753 SPATA31D1Q6ZQQ2 1576 aa27.76■■■□□ 2.03
TRIM28-202ENST00000341753 BAG4O95429 457 aaKnown RBP27.75■■■□□ 2.03
TRIM28-202ENST00000341753 NCLP19338 710 aaKnown RBP27.75■■■□□ 2.03
TRIM28-202ENST00000341753 MRPL50Q8N5N7 158 aaKnown RBP27.75■■■□□ 2.03
TRIM28-202ENST00000341753 PHACTR3Q96KR7 559 aa27.75■■■□□ 2.03
TRIM28-202ENST00000341753 NUTM2FA1L443 756 aa27.74■■■□□ 2.03
TRIM28-202ENST00000341753 PPP6R1Q9UPN7 881 aa27.74■■■□□ 2.03
TRIM28-202ENST00000341753 GOLGA6L22H0YM25 854 aa27.73■■■□□ 2.03
TRIM28-202ENST00000341753 VAMP4O75379 141 aa27.73■■■□□ 2.03
TRIM28-202ENST00000341753 WASLO00401 505 aaPredicted RBP27.72■■■□□ 2.03
TRIM28-202ENST00000341753 GSPT1P15170 499 aaKnown RBP27.72■■■□□ 2.03
TRIM28-202ENST00000341753 MCTP1Q6DN14 999 aa27.72■■■□□ 2.03
TRIM28-202ENST00000341753 MED14O60244 1454 aa27.71■■■□□ 2.03
TRIM28-202ENST00000341753 CDC45O75419 566 aa27.71■■■□□ 2.03
TRIM28-202ENST00000341753 AK9Q5TCS8 1911 aa27.71■■■□□ 2.03
TRIM28-202ENST00000341753 REREQ9P2R6 1566 aa27.7■■■□□ 2.03
TRIM28-202ENST00000341753 CCDC173Q0VFZ6 552 aa27.7■■■□□ 2.02
TRIM28-202ENST00000341753 PKP1Q13835 747 aa27.7■■■□□ 2.02
TRIM28-202ENST00000341753 PTMSP20962 102 aa27.69■■■□□ 2.02
TRIM28-202ENST00000341753 RRS1Q15050 365 aaKnown RBP27.69■■■□□ 2.02
TRIM28-202ENST00000341753 C16orf71Q8IYS4 520 aaPredicted RBP27.69■■■□□ 2.02
TRIM28-202ENST00000341753 NUDT16Q96DE0 195 aaKnown RBP27.69■■■□□ 2.02
TRIM28-202ENST00000341753 PNPLA6Q8IY17 1366 aa27.68■■■□□ 2.02
TRIM28-202ENST00000341753 ANKRD26Q9UPS8 1709 aa27.68■■■□□ 2.02
TRIM28-202ENST00000341753 SETD1AO15047 1707 aaKnown RBP27.68■■■□□ 2.02
TRIM28-202ENST00000341753 FCHSD2O94868 740 aa27.68■■■□□ 2.02
TRIM28-202ENST00000341753 KLHL40Q2TBA0 621 aa27.68■■■□□ 2.02
TRIM28-202ENST00000341753 CAVIN1Q6NZI2 390 aaKnown RBP27.68■■■□□ 2.02
TRIM28-202ENST00000341753 KIAA1211Q6ZU35 1233 aa27.68■■■□□ 2.02
TRIM28-202ENST00000341753 LRRC7Q96NW7 1537 aa27.68■■■□□ 2.02
TRIM28-202ENST00000341753 ZMYND15Q9H091 742 aa27.68■■■□□ 2.02
TRIM28-202ENST00000341753 NRXN3Q9Y4C0 1643 aa27.67■■■□□ 2.02
TRIM28-202ENST00000341753 PKNOX2Q96KN3 472 aa27.66■■■□□ 2.02
TRIM28-202ENST00000341753 KIF20BQ96Q89 1820 aa27.66■■■□□ 2.02
TRIM28-202ENST00000341753 CEBPAP49715 358 aaPredicted RBP27.66■■■□□ 2.02
TRIM28-202ENST00000341753 ANP32BQ92688 251 aaKnown RBP27.66■■■□□ 2.02
TRIM28-202ENST00000341753 PPP1R9BQ96SB3 815 aa27.66■■■□□ 2.02
TRIM28-202ENST00000341753 MBIPQ9NS73 344 aa27.65■■■□□ 2.02
TRIM28-202ENST00000341753 APBB1O00213 710 aa27.64■■■□□ 2.02
TRIM28-202ENST00000341753 PLEKHM2Q8IWE5 1019 aa27.64■■■□□ 2.02
TRIM28-202ENST00000341753 ZSCAN30Q86W11 494 aa27.64■■■□□ 2.01
TRIM28-202ENST00000341753 CHAMP1Q96JM3 812 aa27.64■■■□□ 2.01
TRIM28-202ENST00000341753 OTUD7AQ8TE49 926 aaPredicted RBP27.63■■■□□ 2.01
TRIM28-202ENST00000341753 DLC1Q96QB1 1528 aa27.63■■■□□ 2.01
TRIM28-202ENST00000341753 NFE2L2Q16236 605 aa27.63■■■□□ 2.01
TRIM28-202ENST00000341753 BRPF1P55201 1214 aaPredicted RBP27.62■■■□□ 2.01
TRIM28-202ENST00000341753 C8orf58Q8NAV2 365 aa27.62■■■□□ 2.01
TRIM28-202ENST00000341753 TWISTNBQ3B726 338 aaPredicted RBP27.62■■■□□ 2.01
TRIM28-202ENST00000341753 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.62■■■□□ 2.012e-8■□□□□ 9.6
TRIM28-202ENST00000341753 ABCC4O15439 1325 aa27.62■■■□□ 2.01
TRIM28-202ENST00000341753 PTCH1Q13635 1447 aa27.61■■■□□ 2.01
TRIM28-202ENST00000341753 PRR36Q9H6K5 1346 aa27.61■■■□□ 2.01
TRIM28-202ENST00000341753 ATP7BP35670 1465 aa27.61■■■□□ 2.01
TRIM28-202ENST00000341753 ARHGAP45Q92619 1136 aa27.61■■■□□ 2.01
TRIM28-202ENST00000341753 FAM135BQ49AJ0 1406 aa27.61■■■□□ 2.01
TRIM28-202ENST00000341753 TPM2P07951 284 aa27.6■■■□□ 2.01
TRIM28-202ENST00000341753 MSNP26038 577 aaKnown RBP27.6■■■□□ 2.01
TRIM28-202ENST00000341753 ZSCAN23Q3MJ62 389 aa27.6■■■□□ 2.01
TRIM28-202ENST00000341753 CHMP4BQ9H444 224 aaKnown RBP27.6■■■□□ 2.01
TRIM28-202ENST00000341753 KIF13AQ9H1H9 1805 aa27.6■■■□□ 2.01
TRIM28-202ENST00000341753 TNRQ92752 1358 aa27.6■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms