RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 NECTIN2Q92692 538 aa17.86■□□□□ 0.45
CPSF7-201ENST00000340437 COG3Q96JB2 828 aa17.86■□□□□ 0.45
CPSF7-201ENST00000340437 ZNF692Q9BU19 519 aaPredicted RBP17.86■□□□□ 0.45
CPSF7-201ENST00000340437 FSD2A1L4K1 749 aa17.85■□□□□ 0.45
CPSF7-201ENST00000340437 MCTP1Q6DN14 999 aa17.85■□□□□ 0.45
CPSF7-201ENST00000340437 ARAP3Q8WWN8 1544 aa17.85■□□□□ 0.45
CPSF7-201ENST00000340437 GOLGA6L22H0YM25 854 aa17.85■□□□□ 0.45
CPSF7-201ENST00000340437 CDC45O75419 566 aa17.85■□□□□ 0.45
CPSF7-201ENST00000340437 FOXD4L6Q3SYB3 417 aaPredicted RBP17.85■□□□□ 0.45
CPSF7-201ENST00000340437 FOXD4L3Q6VB84 417 aaPredicted RBP17.85■□□□□ 0.45
CPSF7-201ENST00000340437 SULT6B1Q6IMI4 303 aa17.84■□□□□ 0.45
CPSF7-201ENST00000340437 PUS7Q96PZ0 661 aaKnown RBP17.84■□□□□ 0.45
CPSF7-201ENST00000340437 POGZQ7Z3K3 1410 aa17.84■□□□□ 0.45
CPSF7-201ENST00000340437 CALD1Q05682 793 aaKnown RBP17.84■□□□□ 0.45
CPSF7-201ENST00000340437 SETBP1Q9Y6X0 1596 aa17.83■□□□□ 0.45
CPSF7-201ENST00000340437 CHAMP1Q96JM3 812 aa17.83■□□□□ 0.45
CPSF7-201ENST00000340437 KIF2CQ99661 725 aa17.83■□□□□ 0.45
CPSF7-201ENST00000340437 YTHDC2Q9H6S0 1430 aaKnown RBP17.83■□□□□ 0.44
CPSF7-201ENST00000340437 CHMP4BQ9H444 224 aaKnown RBP17.83■□□□□ 0.44
CPSF7-201ENST00000340437 TSHZ3Q63HK5 1081 aa17.83■□□□□ 0.44
CPSF7-201ENST00000340437 FAM69CQ0P6D2 419 aa17.82■□□□□ 0.44
CPSF7-201ENST00000340437 GSPT1P15170 499 aaKnown RBP17.82■□□□□ 0.44
CPSF7-201ENST00000340437 API5Q9BZZ5 524 aaKnown RBP17.82■□□□□ 0.44
CPSF7-201ENST00000340437 VIRMAQ69YN4 1812 aaKnown RBP17.82■□□□□ 0.44
CPSF7-201ENST00000340437 ABCC3O15438 1527 aa17.81■□□□□ 0.44
CPSF7-201ENST00000340437 SNX21Q969T3 373 aa17.81■□□□□ 0.44
CPSF7-201ENST00000340437 RAB3GAP1Q15042 981 aa17.8■□□□□ 0.44
CPSF7-201ENST00000340437 IFT57Q9NWB7 429 aa17.8■□□□□ 0.44
CPSF7-201ENST00000340437 CAMSAP1Q5T5Y3 1602 aa17.8■□□□□ 0.44
CPSF7-201ENST00000340437 YEATS2Q9ULM3 1422 aa17.8■□□□□ 0.44
CPSF7-201ENST00000340437 F6X3S4 739 aa17.8■□□□□ 0.44
CPSF7-201ENST00000340437 IL13P35225 146 aa17.8■□□□□ 0.44
CPSF7-201ENST00000340437 PLEKHM2Q8IWE5 1019 aa17.8■□□□□ 0.44
CPSF7-201ENST00000340437 ANP32BQ92688 251 aaKnown RBP17.8■□□□□ 0.44
CPSF7-201ENST00000340437 MYO3AQ8NEV4 1616 aa17.8■□□□□ 0.44
CPSF7-201ENST00000340437 ESPNB1AK53 854 aa17.79■□□□□ 0.44
CPSF7-201ENST00000340437 PKP1Q13835 747 aa17.79■□□□□ 0.44
CPSF7-201ENST00000340437 CAVIN1Q6NZI2 390 aaKnown RBP17.79■□□□□ 0.44
CPSF7-201ENST00000340437 PPLO60437 1756 aa17.79■□□□□ 0.44
CPSF7-201ENST00000340437 CFAP44Q96MT7 982 aa17.79■□□□□ 0.44
CPSF7-201ENST00000340437 LMOD2Q6P5Q4 547 aa17.79■□□□□ 0.44
CPSF7-201ENST00000340437 NUDT16Q96DE0 195 aaKnown RBP17.79■□□□□ 0.44
CPSF7-201ENST00000340437 IFT172Q9UG01 1749 aa17.79■□□□□ 0.44
CPSF7-201ENST00000340437 ZMYM3Q14202 1370 aa17.78■□□□□ 0.44
CPSF7-201ENST00000340437 MEIS3Q99687 375 aa17.78■□□□□ 0.44
CPSF7-201ENST00000340437 SLC4A2P04920 1241 aa17.77■□□□□ 0.44
CPSF7-201ENST00000340437 NCBP3Q53F19 620 aaKnown RBP17.77■□□□□ 0.44
CPSF7-201ENST00000340437 ERBB4Q15303 1308 aa17.77■□□□□ 0.43
CPSF7-201ENST00000340437 LMTK2Q8IWU2 1503 aa17.76■□□□□ 0.43
CPSF7-201ENST00000340437 ZGPATQ8N5A5 531 aaKnown RBP17.76■□□□□ 0.43
CPSF7-201ENST00000340437 BAG4O95429 457 aaKnown RBP17.76■□□□□ 0.43
CPSF7-201ENST00000340437 LMOD3Q0VAK6 560 aa17.76■□□□□ 0.43
CPSF7-201ENST00000340437 FRMPD1Q5SYB0 1578 aa17.76■□□□□ 0.43
CPSF7-201ENST00000340437 PRPF40AO75400 957 aaKnown RBP17.76■□□□□ 0.43
CPSF7-201ENST00000340437 NASPP49321 788 aaPredicted RBP17.75■□□□□ 0.43
CPSF7-201ENST00000340437 WASLO00401 505 aaPredicted RBP17.75■□□□□ 0.43
CPSF7-201ENST00000340437 SDSP20132 328 aa17.75■□□□□ 0.43
CPSF7-201ENST00000340437 CASC1Q6TDU7 716 aa17.75■□□□□ 0.43
CPSF7-201ENST00000340437 CIZ1Q9ULV3 898 aaPredicted RBP17.75■□□□□ 0.43
CPSF7-201ENST00000340437 FOXO3O43524 673 aa17.75■□□□□ 0.43
CPSF7-201ENST00000340437 SKOR2Q2VWA4 1001 aaPredicted RBP17.75■□□□□ 0.43
CPSF7-201ENST00000340437 ARHGAP45Q92619 1136 aa17.75■□□□□ 0.43
CPSF7-201ENST00000340437 ZNF428Q96B54 188 aa17.75■□□□□ 0.43
CPSF7-201ENST00000340437 COL3A1P02461 1466 aaPredicted RBP17.74■□□□□ 0.43
CPSF7-201ENST00000340437 NEXMIFQ5QGS0 1516 aa17.74■□□□□ 0.43
CPSF7-201ENST00000340437 RBM27Q9P2N5 1060 aaKnown RBP17.74■□□□□ 0.43
CPSF7-201ENST00000340437 EXOC6BQ9Y2D4 811 aa17.74■□□□□ 0.43
CPSF7-201ENST00000340437 TTC22Q5TAA0 569 aa17.74■□□□□ 0.43
CPSF7-201ENST00000340437 HSP90AB2PQ58FF8 381 aa17.74■□□□□ 0.43
CPSF7-201ENST00000340437 NUTM2GQ5VZR2 741 aa17.74■□□□□ 0.43
CPSF7-201ENST00000340437 RILPL2Q969X0 211 aa17.74■□□□□ 0.43
CPSF7-201ENST00000340437 LRRC7Q96NW7 1537 aa17.73■□□□□ 0.43
CPSF7-201ENST00000340437 CD163L1Q9NR16 1453 aa17.73■□□□□ 0.43
CPSF7-201ENST00000340437 MLH3Q9UHC1 1453 aa17.73■□□□□ 0.43
CPSF7-201ENST00000340437 CLCN1P35523 988 aa17.73■□□□□ 0.43
CPSF7-201ENST00000340437 INTS3Q68E01 1043 aaKnown RBP17.73■□□□□ 0.43
CPSF7-201ENST00000340437 LTV1Q96GA3 475 aaPredicted RBP17.73■□□□□ 0.43
CPSF7-201ENST00000340437 TRIM6-TRIM34B2RNG4 842 aa17.73■□□□□ 0.43
CPSF7-201ENST00000340437 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.73■□□□□ 0.43
CPSF7-201ENST00000340437 ADGRB2O60241 1585 aa17.72■□□□□ 0.43
CPSF7-201ENST00000340437 ABCC4O15439 1325 aa17.72■□□□□ 0.43
CPSF7-201ENST00000340437 ZC3H13Q5T200 1668 aaKnown RBP17.72■□□□□ 0.43
CPSF7-201ENST00000340437 ARHGEF28Q8N1W1 1705 aaKnown RBP17.72■□□□□ 0.43
CPSF7-201ENST00000340437 NEURL4Q96JN8 1562 aa17.72■□□□□ 0.43
CPSF7-201ENST00000340437 DDIT3P35638 169 aa17.72■□□□□ 0.43
CPSF7-201ENST00000340437 DCTPP1Q9H773 170 aa17.72■□□□□ 0.43
CPSF7-201ENST00000340437 PNPLA6Q8IY17 1366 aa17.72■□□□□ 0.43
CPSF7-201ENST00000340437 RABEP1Q15276 862 aa17.71■□□□□ 0.43
CPSF7-201ENST00000340437 G2E3Q7L622 706 aa17.71■□□□□ 0.43
CPSF7-201ENST00000340437 FAM135BQ49AJ0 1406 aa17.71■□□□□ 0.43
CPSF7-201ENST00000340437 PTPRMP28827 1452 aa17.71■□□□□ 0.43
CPSF7-201ENST00000340437 RBM33Q96EV2 1170 aaKnown RBP17.71■□□□□ 0.43
CPSF7-201ENST00000340437 TRHP20396 242 aaPredicted RBP17.7■□□□□ 0.42
CPSF7-201ENST00000340437 USP26Q9BXU7 913 aa17.7■□□□□ 0.42
CPSF7-201ENST00000340437 CCDC61Q9Y6R9 512 aa17.7■□□□□ 0.42
CPSF7-201ENST00000340437 ZNF853P0CG23 659 aa17.7■□□□□ 0.42
CPSF7-201ENST00000340437 NEK4P51957 841 aa17.7■□□□□ 0.42
CPSF7-201ENST00000340437 EIF4A2Q14240 407 aaKnown RBP17.7■□□□□ 0.42
CPSF7-201ENST00000340437 RTF1Q92541 710 aaKnown RBP17.7■□□□□ 0.42
CPSF7-201ENST00000340437 ST18O60284 1047 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms