RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 BCL2L13Q9BXK5 485 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 ZHX1Q9UKY1 873 aaPredicted RBP7.25□□□□□ -1.25
CSMD1-201ENST00000335551 PPP4R3BQ5MIZ7 849 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 DHX37Q8IY37 1157 aaKnown RBP7.25□□□□□ -1.25
CSMD1-201ENST00000335551 MPHOSPH9Q99550 1183 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 RRP7AQ9Y3A4 280 aaKnown RBP7.25□□□□□ -1.25
CSMD1-201ENST00000335551 CBX1P83916 185 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 KRT222Q8N1A0 295 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 CCDC144AA2RUR9 1427 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 KRT18P05783 430 aaKnown RBP7.25□□□□□ -1.25
CSMD1-201ENST00000335551 AMPHP49418 695 aa7.25□□□□□ -1.25
CSMD1-201ENST00000335551 GTF2F1P35269 517 aaKnown RBP eCLIP7.24□□□□□ -1.25
CSMD1-201ENST00000335551 FAM177A1Q8N128 213 aaPredicted RBP7.24□□□□□ -1.25
CSMD1-201ENST00000335551 UPF3BQ9BZI7 483 aaKnown RBP7.24□□□□□ -1.25
CSMD1-201ENST00000335551 ZMYND15Q9H091 742 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 PRDM2Q13029 1718 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 CETN2P41208 172 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 CEP112Q8N8E3 955 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 MSL1Q68DK7 614 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 GOLGA6L9A6NEM1 432 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 MLECQ14165 292 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 PRIMPOLQ96LW4 560 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 TAOK3Q9H2K8 898 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 DDX46Q7L014 1031 aaKnown RBP7.24□□□□□ -1.25
CSMD1-201ENST00000335551 CDKL5O76039 1030 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 PLEKHH1Q9ULM0 1364 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 SMARCC1Q92922 1105 aaPredicted RBP7.24□□□□□ -1.25
CSMD1-201ENST00000335551 GTPBP4Q9BZE4 634 aaKnown RBP7.24□□□□□ -1.25
CSMD1-201ENST00000335551 VPS36Q86VN1 386 aa7.24□□□□□ -1.25
CSMD1-201ENST00000335551 DDX23Q9BUQ8 820 aaKnown RBP7.24□□□□□ -1.25
CSMD1-201ENST00000335551 NSRP1Q9H0G5 558 aaKnown RBP7.24□□□□□ -1.25
CSMD1-201ENST00000335551 ABCC8Q09428 1581 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 POTEJP0CG39 1038 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 TNNT1P13805 278 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 NUP62CLQ9H1M0 184 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 SPA17Q15506 151 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 K7ELQ4 463 aaPredicted RBP7.23□□□□□ -1.25
CSMD1-201ENST00000335551 TDO2P48775 406 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 SF3B2Q13435 895 aaKnown RBP7.23□□□□□ -1.25
CSMD1-201ENST00000335551 TRIM22Q8IYM9 498 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 NAP1L3Q99457 506 aaPredicted RBP7.23□□□□□ -1.25
CSMD1-201ENST00000335551 NAA15Q9BXJ9 866 aaKnown RBP7.23□□□□□ -1.25
CSMD1-201ENST00000335551 MAP3K11Q16584 847 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 EFCAB2Q5VUJ9 269 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 TTC5Q8N0Z6 440 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 PRKRIP1Q9H875 184 aaPredicted RBP7.23□□□□□ -1.25
CSMD1-201ENST00000335551 KIF3CO14782 793 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 TRIM21P19474 475 aaKnown RBP7.23□□□□□ -1.25
CSMD1-201ENST00000335551 DDX12PQ92771 950 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 TOP2AP11388 1531 aaKnown RBP7.23□□□□□ -1.25
CSMD1-201ENST00000335551 NEK4P51957 841 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 HOOK3Q86VS8 718 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 ALS2CR12Q96Q35 445 aa7.23□□□□□ -1.25
CSMD1-201ENST00000335551 TMEM132AQ24JP5 1023 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 LNPKQ9C0E8 428 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 PAXBP1Q9Y5B6 917 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 NOL3O60936 208 aaKnown RBP7.22□□□□□ -1.25
CSMD1-201ENST00000335551 CNTLNQ9NXG0 1405 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 GSDMDP57764 484 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 RSRC1Q96IZ7 334 aaKnown RBP7.22□□□□□ -1.25
CSMD1-201ENST00000335551 CCDC113Q9H0I3 377 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 CEP83Q9Y592 693 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 BMS1Q14692 1282 aaKnown RBP7.22□□□□□ -1.25
CSMD1-201ENST00000335551 ZNF710Q8N1W2 664 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 SPATA32Q96LK8 384 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 EHBP1Q8NDI1 1231 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 PAIP2Q9BPZ3 127 aaKnown RBP7.22□□□□□ -1.25
CSMD1-201ENST00000335551 LMAN1P49257 510 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 GGT6Q6P531 493 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 GSTTP1A0A1W2PQM5 241 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 TTC31Q49AM3 519 aaPredicted RBP7.22□□□□□ -1.25
CSMD1-201ENST00000335551 FSD1Q9BTV5 496 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 FAM184BQ9ULE4 1060 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 SOGA1O94964 1423 aa7.22□□□□□ -1.25
CSMD1-201ENST00000335551 PPP1R12BO60237 982 aaPredicted RBP7.21□□□□□ -1.25
CSMD1-201ENST00000335551 ANAPC15P60006 121 aa7.21□□□□□ -1.25
CSMD1-201ENST00000335551 SARNPP82979 210 aaKnown RBP7.21□□□□□ -1.25
CSMD1-201ENST00000335551 CAVIN2O95810 425 aa7.21□□□□□ -1.25
CSMD1-201ENST00000335551 CCDC183Q5T5S1 534 aa7.21□□□□□ -1.25
CSMD1-201ENST00000335551 CUX1P39880 1505 aa7.21□□□□□ -1.25
CSMD1-201ENST00000335551 IBSPP21815 317 aaPredicted RBP7.21□□□□□ -1.25
CSMD1-201ENST00000335551 MCM4P33991 863 aa7.21□□□□□ -1.25
CSMD1-201ENST00000335551 TANGO6Q9C0B7 1094 aa7.21□□□□□ -1.25
CSMD1-201ENST00000335551 RBM28Q9NW13 759 aaKnown RBP7.21□□□□□ -1.25
CSMD1-201ENST00000335551 EIF5P55010 431 aaKnown RBP7.21□□□□□ -1.25
CSMD1-201ENST00000335551 EVC2Q86UK5 1308 aa7.21□□□□□ -1.26
CSMD1-201ENST00000335551 SREK1Q8WXA9 508 aaKnown RBP7.21□□□□□ -1.26
CSMD1-201ENST00000335551 COG3Q96JB2 828 aa7.21□□□□□ -1.26
CSMD1-201ENST00000335551 BRD4O60885 1362 aaPredicted RBP7.21□□□□□ -1.26
CSMD1-201ENST00000335551 PANK3Q9H999 370 aa7.21□□□□□ -1.26
CSMD1-201ENST00000335551 TEFQ10587 303 aa7.21□□□□□ -1.26
CSMD1-201ENST00000335551 CFAP100Q494V2 611 aa7.21□□□□□ -1.26
CSMD1-201ENST00000335551 GRIPAP1Q4V328 841 aa7.21□□□□□ -1.26
CSMD1-201ENST00000335551 DNAI2Q9GZS0 605 aa7.21□□□□□ -1.26
CSMD1-201ENST00000335551 CYP46A1Q9Y6A2 500 aa7.21□□□□□ -1.26
CSMD1-201ENST00000335551 CCDC171Q6TFL3 1326 aa7.21□□□□□ -1.26
CSMD1-201ENST00000335551 FSD2A1L4K1 749 aa7.21□□□□□ -1.26
CSMD1-201ENST00000335551 GNAI1P63096 354 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 UBE4AQ14139 1066 aa7.2□□□□□ -1.26
CSMD1-201ENST00000335551 SCAPERQ9BY12 1400 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms