RNA–Protein interactions for RNA: ENST00000331563.6

PKP3-201, Transcript of plakophilin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PKP3, Length 2,809 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-201ENST00000331563 FBLN1P23142 703 aa22.52■■□□□ 1.2
PKP3-201ENST00000331563 DMTNQ08495 405 aa22.52■■□□□ 1.2
PKP3-201ENST00000331563 SPATA31D1Q6ZQQ2 1576 aa22.51■■□□□ 1.19
PKP3-201ENST00000331563 NCKAP5LQ9HCH0 1330 aa22.51■■□□□ 1.19
PKP3-201ENST00000331563 SNX21Q969T3 373 aa22.51■■□□□ 1.19
PKP3-201ENST00000331563 A0A1W2PP64 1363 aa22.51■■□□□ 1.19
PKP3-201ENST00000331563 METP08581 1390 aa22.51■■□□□ 1.19
PKP3-201ENST00000331563 UQCRHLA0A096LP55 91 aa22.5■■□□□ 1.19
PKP3-201ENST00000331563 UQCRHP07919 91 aa22.5■■□□□ 1.19
PKP3-201ENST00000331563 DZIP1LQ8IYY4 767 aaKnown RBP22.5■■□□□ 1.19
PKP3-201ENST00000331563 ZKSCAN2Q63HK3 967 aa22.49■■□□□ 1.19
PKP3-201ENST00000331563 TCP11L2Q8N4U5 519 aa22.49■■□□□ 1.19
PKP3-201ENST00000331563 XPCQ01831 940 aaPredicted RBP22.49■■□□□ 1.19
PKP3-201ENST00000331563 NCOA3Q9Y6Q9 1424 aa22.48■■□□□ 1.19
PKP3-201ENST00000331563 TNRQ92752 1358 aa22.48■■□□□ 1.19
PKP3-201ENST00000331563 SSFA2P28290 1259 aa22.48■■□□□ 1.19
PKP3-201ENST00000331563 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.48■■□□□ 1.19
PKP3-201ENST00000331563 NUTM2FA1L443 756 aa22.48■■□□□ 1.19
PKP3-201ENST00000331563 ITPRIPQ8IWB1 547 aa22.48■■□□□ 1.19
PKP3-201ENST00000331563 RBM25P49756 843 aaKnown RBP22.47■■□□□ 1.19
PKP3-201ENST00000331563 ANKRD36BQ8N2N9 1353 aa22.47■■□□□ 1.19
PKP3-201ENST00000331563 LTKP29376 864 aa22.46■■□□□ 1.19
PKP3-201ENST00000331563 RUNDC1Q96C34 613 aa22.46■■□□□ 1.19
PKP3-201ENST00000331563 SLC26A8Q96RN1 970 aa22.46■■□□□ 1.19
PKP3-201ENST00000331563 CHMP4BQ9H444 224 aaKnown RBP22.44■■□□□ 1.18
PKP3-201ENST00000331563 KLHL40Q2TBA0 621 aa22.44■■□□□ 1.18
PKP3-201ENST00000331563 TAF7LQ5H9L4 462 aa22.44■■□□□ 1.18
PKP3-201ENST00000331563 ZSCAN20P17040 1043 aaPredicted RBP22.43■■□□□ 1.18
PKP3-201ENST00000331563 LNPKQ9C0E8 428 aa22.43■■□□□ 1.18
PKP3-201ENST00000331563 FYB1O15117 783 aa22.43■■□□□ 1.18
PKP3-201ENST00000331563 CAVIN1Q6NZI2 390 aaKnown RBP22.43■■□□□ 1.18
PKP3-201ENST00000331563 SMC4Q9NTJ3 1288 aa22.43■■□□□ 1.18
PKP3-201ENST00000331563 K7ELQ4 463 aaPredicted RBP22.42■■□□□ 1.18
PKP3-201ENST00000331563 WDR63Q8IWG1 891 aa22.42■■□□□ 1.18
PKP3-201ENST00000331563 CD2BP2O95400 341 aaKnown RBP22.41■■□□□ 1.18
PKP3-201ENST00000331563 DYNC1I1O14576 645 aa22.41■■□□□ 1.18
PKP3-201ENST00000331563 HDAC1Q13547 482 aaPredicted RBP22.41■■□□□ 1.18
PKP3-201ENST00000331563 MCTP1Q6DN14 999 aa22.41■■□□□ 1.18
PKP3-201ENST00000331563 BAG4O95429 457 aaKnown RBP22.4■■□□□ 1.18
PKP3-201ENST00000331563 NOL7Q9UMY1 257 aaKnown RBP22.4■■□□□ 1.18
PKP3-201ENST00000331563 PPP4R3BQ5MIZ7 849 aa22.4■■□□□ 1.18
PKP3-201ENST00000331563 TERF2IPQ9NYB0 399 aa22.4■■□□□ 1.18
PKP3-201ENST00000331563 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.39■■□□□ 1.18
PKP3-201ENST00000331563 RBM42Q9BTD8 480 aaKnown RBP22.39■■□□□ 1.17
PKP3-201ENST00000331563 DDX19BQ9UMR2 479 aa22.39■■□□□ 1.17
PKP3-201ENST00000331563 IPO4Q8TEX9 1081 aaKnown RBP22.38■■□□□ 1.17
PKP3-201ENST00000331563 CCDC94Q9BW85 323 aaPredicted RBP22.38■■□□□ 1.17
PKP3-201ENST00000331563 HS1BP3Q53T59 392 aa22.38■■□□□ 1.17
PKP3-201ENST00000331563 GAS2L2Q8NHY3 880 aa22.38■■□□□ 1.17
PKP3-201ENST00000331563 PUS7Q96PZ0 661 aaKnown RBP22.38■■□□□ 1.17
PKP3-201ENST00000331563 TMEM2Q9UHN6 1383 aa22.37■■□□□ 1.17
PKP3-201ENST00000331563 ZNF500O60304 480 aaPredicted RBP22.37■■□□□ 1.17
PKP3-201ENST00000331563 U2AF1L5P0DN76 240 aaPredicted RBP22.37■■□□□ 1.17
PKP3-201ENST00000331563 U2AF1Q01081 240 aaKnown RBP eCLIP22.37■■□□□ 1.17
PKP3-201ENST00000331563 POLR3AO14802 1390 aaPredicted RBP22.37■■□□□ 1.17
PKP3-201ENST00000331563 ATAD2Q6PL18 1390 aa22.37■■□□□ 1.17
PKP3-201ENST00000331563 CSPP1Q1MSJ5 1256 aa22.37■■□□□ 1.17
PKP3-201ENST00000331563 ZRANB1Q9UGI0 708 aa22.37■■□□□ 1.17
PKP3-201ENST00000331563 U2SURPO15042 1029 aaKnown RBP22.36■■□□□ 1.17
PKP3-201ENST00000331563 HDGFL2Q7Z4V5 671 aaPredicted RBP22.36■■□□□ 1.17
PKP3-201ENST00000331563 CD163L1Q9NR16 1453 aa22.36■■□□□ 1.17
PKP3-201ENST00000331563 ZBTB7CA1YPR0 619 aa22.36■■□□□ 1.17
PKP3-201ENST00000331563 ZSCAN23Q3MJ62 389 aa22.36■■□□□ 1.17
PKP3-201ENST00000331563 KIF20AO95235 890 aa22.35■■□□□ 1.17
PKP3-201ENST00000331563 TRIM27P14373 513 aa22.35■■□□□ 1.17
PKP3-201ENST00000331563 TSR2Q969E8 191 aaKnown RBP22.35■■□□□ 1.17
PKP3-201ENST00000331563 RBSNQ9H1K0 784 aa22.35■■□□□ 1.17
PKP3-201ENST00000331563 IBTKQ9P2D0 1353 aaPredicted RBP22.34■■□□□ 1.17
PKP3-201ENST00000331563 NRXN3Q9Y4C0 1643 aa22.34■■□□□ 1.17
PKP3-201ENST00000331563 WASLO00401 505 aaPredicted RBP22.34■■□□□ 1.17
PKP3-201ENST00000331563 ABCC11Q96J66 1382 aa22.34■■□□□ 1.17
PKP3-201ENST00000331563 ZNF445P59923 1031 aa22.34■■□□□ 1.17
PKP3-201ENST00000331563 KIF2CQ99661 725 aa22.34■■□□□ 1.17
PKP3-201ENST00000331563 HDGFP51858 240 aaKnown RBP22.33■■□□□ 1.17
PKP3-201ENST00000331563 ZKSCAN5Q9Y2L8 839 aa22.33■■□□□ 1.17
PKP3-201ENST00000331563 CFAP53Q96M91 514 aa22.32■■□□□ 1.16
PKP3-201ENST00000331563 GTPBP4Q9BZE4 634 aaKnown RBP22.32■■□□□ 1.16
PKP3-201ENST00000331563 TMEM51Q9NW97 253 aa22.32■■□□□ 1.16
PKP3-201ENST00000331563 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.32■■□□□ 1.16
PKP3-201ENST00000331563 PRIM1P49642 420 aaKnown RBP22.31■■□□□ 1.16
PKP3-201ENST00000331563 NUCB1Q02818 461 aa22.31■■□□□ 1.16
PKP3-201ENST00000331563 SASS6Q6UVJ0 657 aa22.31■■□□□ 1.16
PKP3-201ENST00000331563 CHD1LQ86WJ1 897 aa22.31■■□□□ 1.16
PKP3-201ENST00000331563 NUDT16Q96DE0 195 aaKnown RBP22.31■■□□□ 1.16
PKP3-201ENST00000331563 ATF7IPQ6VMQ6 1270 aa22.3■■□□□ 1.16
PKP3-201ENST00000331563 SETD1AO15047 1707 aaKnown RBP22.3■■□□□ 1.16
PKP3-201ENST00000331563 ROBO2Q9HCK4 1378 aa22.3■■□□□ 1.16
PKP3-201ENST00000331563 EXOSC9Q06265 439 aaKnown RBP22.3■■□□□ 1.16
PKP3-201ENST00000331563 DNTTIP2Q5QJE6 756 aaKnown RBP22.3■■□□□ 1.16
PKP3-201ENST00000331563 NME9Q86XW9 330 aa22.3■■□□□ 1.16
PKP3-201ENST00000331563 TMEM57Q8N5G2 664 aa22.3■■□□□ 1.16
PKP3-201ENST00000331563 NOB1Q9ULX3 412 aaKnown RBP22.3■■□□□ 1.16
PKP3-201ENST00000331563 ANKRD45Q5TZF3 282 aa22.29■■□□□ 1.16
PKP3-201ENST00000331563 UBR1Q8IWV7 1749 aa22.29■■□□□ 1.16
PKP3-201ENST00000331563 PTMAP06454 111 aaKnown RBP22.29■■□□□ 1.16
PKP3-201ENST00000331563 SSH1Q8WYL5 1049 aa22.29■■□□□ 1.16
PKP3-201ENST00000331563 PHF23Q9BUL5 403 aaPredicted RBP22.29■■□□□ 1.16
PKP3-201ENST00000331563 BMP2KLQ5H9B9 411 aa22.28■■□□□ 1.16
PKP3-201ENST00000331563 PRPF40AO75400 957 aaKnown RBP22.27■■□□□ 1.16
PKP3-201ENST00000331563 PDLIM2Q96JY6 352 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms