RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 NUP133Q8WUM0 1156 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 WWC2Q6AWC2 1192 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 CCDC113Q9H0I3 377 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 TBC1D2BQ9UPU7 963 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 UACAQ9BZF9 1416 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 AKNAQ7Z591 1439 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 NF2P35240 595 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 TXLNAP40222 546 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 CHMP4BP1P59074 171 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 MYO10Q9HD67 2058 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 GOLGA6L7A0A1B0GV03 622 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 DNA2P51530 1060 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 UBXN4Q92575 508 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 CFAP45Q9UL16 551 aa9.33□□□□□ -0.92
CIITA-201ENST00000324288 PLCD3Q8N3E9 789 aa9.32□□□□□ -0.92
CIITA-201ENST00000324288 RBM5P52756 815 aaKnown RBP eCLIP9.32□□□□□ -0.92
CIITA-201ENST00000324288 CAMK4Q16566 473 aa9.32□□□□□ -0.92
CIITA-201ENST00000324288 KIF6Q6ZMV9 814 aa9.32□□□□□ -0.92
CIITA-201ENST00000324288 PSMA5P28066 241 aa9.32□□□□□ -0.92
CIITA-201ENST00000324288 CCDC97Q96F63 343 aaPredicted RBP9.32□□□□□ -0.92
CIITA-201ENST00000324288 WIZO95785 1651 aa9.32□□□□□ -0.92
CIITA-201ENST00000324288 ATF3P18847 181 aa9.31□□□□□ -0.92
CIITA-201ENST00000324288 CNNM1Q9NRU3 951 aa9.31□□□□□ -0.92
CIITA-201ENST00000324288 GBP2P32456 591 aaPredicted RBP9.31□□□□□ -0.92
CIITA-201ENST00000324288 EZRP15311 586 aaKnown RBP9.31□□□□□ -0.92
CIITA-201ENST00000324288 DDX11Q96FC9 970 aa9.31□□□□□ -0.92
CIITA-201ENST00000324288 GTF2A1P52655 376 aaPredicted RBP9.31□□□□□ -0.92
CIITA-201ENST00000324288 GNAI1P63096 354 aa9.31□□□□□ -0.92
CIITA-201ENST00000324288 NOB1Q9ULX3 412 aaKnown RBP9.31□□□□□ -0.92
CIITA-201ENST00000324288 VGFO15240 615 aaPredicted RBP9.31□□□□□ -0.92
CIITA-201ENST00000324288 TMEM132EQ6IEE7 984 aa9.31□□□□□ -0.92
CIITA-201ENST00000324288 ERLIN1O75477 346 aa9.31□□□□□ -0.92
CIITA-201ENST00000324288 SLC3A2P08195 630 aaKnown RBP9.31□□□□□ -0.92
CIITA-201ENST00000324288 TSR2Q969E8 191 aaKnown RBP9.31□□□□□ -0.92
CIITA-201ENST00000324288 HSP90AB4PQ58FF6 505 aa9.3□□□□□ -0.92
CIITA-201ENST00000324288 NACADO15069 1562 aa9.3□□□□□ -0.92
CIITA-201ENST00000324288 BBXQ8WY36 941 aaPredicted RBP9.3□□□□□ -0.92
CIITA-201ENST00000324288 CCDC85AQ96PX6 553 aaPredicted RBP9.3□□□□□ -0.92
CIITA-201ENST00000324288 SERPINA10Q9UK55 444 aa9.3□□□□□ -0.92
CIITA-201ENST00000324288 DHX57Q6P158 1386 aaKnown RBP9.3□□□□□ -0.92
CIITA-201ENST00000324288 LIG1P18858 919 aa9.3□□□□□ -0.92
CIITA-201ENST00000324288 CALCOCO1Q9P1Z2 691 aa9.3□□□□□ -0.92
CIITA-201ENST00000324288 K7ELQ4 463 aaPredicted RBP9.3□□□□□ -0.92
CIITA-201ENST00000324288 SLC26A8Q96RN1 970 aa9.3□□□□□ -0.92
CIITA-201ENST00000324288 AEBP2Q6ZN18 517 aaPredicted RBP9.3□□□□□ -0.92
CIITA-201ENST00000324288 ADAMTS8Q9UP79 889 aa9.3□□□□□ -0.92
CIITA-201ENST00000324288 TMCO3Q6UWJ1 677 aa9.29□□□□□ -0.92
CIITA-201ENST00000324288 MYL6BP14649 208 aa9.29□□□□□ -0.92
CIITA-201ENST00000324288 CEP63Q96MT8 703 aa9.29□□□□□ -0.92
CIITA-201ENST00000324288 PTPN14Q15678 1187 aa9.29□□□□□ -0.92
CIITA-201ENST00000324288 DDX54Q8TDD1 881 aaKnown RBP9.29□□□□□ -0.92
CIITA-201ENST00000324288 MAP2K1Q02750 393 aaPredicted RBP9.29□□□□□ -0.92
CIITA-201ENST00000324288 BACH2Q9BYV9 841 aa9.29□□□□□ -0.92
CIITA-201ENST00000324288 EPB41L2O43491 1005 aaKnown RBP9.29□□□□□ -0.92
CIITA-201ENST00000324288 PPM1FP49593 454 aaPredicted RBP9.28□□□□□ -0.92
CIITA-201ENST00000324288 JAKMIP3Q5VZ66 844 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 RBM27Q9P2N5 1060 aaKnown RBP9.28□□□□□ -0.92
CIITA-201ENST00000324288 NLRP6P59044 892 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 GOPCQ9HD26 462 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 UBE4AQ14139 1066 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 CASQ1P31415 396 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 ABTB2Q8N961 1025 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 ZSWIM4Q9H7M6 989 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 RAPGEF2Q9Y4G8 1499 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 WDR33Q9C0J8 1336 aaKnown RBP9.28□□□□□ -0.92
CIITA-201ENST00000324288 STIM1Q13586 685 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 UBE2Q2Q8WVN8 375 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 TAF4BQ92750 862 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 CRACR2AQ9BSW2 395 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 FKBP4Q02790 459 aaKnown RBP eCLIP9.28□□□□□ -0.92
CIITA-201ENST00000324288 CCDC69A6NI79 296 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 IGSF3O75054 1194 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 URI1O94763 535 aaPredicted RBP9.28□□□□□ -0.92
CIITA-201ENST00000324288 NUP62CLQ9H1M0 184 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 KIF7Q2M1P5 1343 aa9.28□□□□□ -0.92
CIITA-201ENST00000324288 LMAN1P49257 510 aa9.27□□□□□ -0.92
CIITA-201ENST00000324288 CBFA2T2O43439 604 aa9.27□□□□□ -0.92
CIITA-201ENST00000324288 ZSCAN30Q86W11 494 aa9.27□□□□□ -0.92
CIITA-201ENST00000324288 PUS7Q96PZ0 661 aaKnown RBP9.27□□□□□ -0.92
CIITA-201ENST00000324288 SHTN1A0MZ66 631 aa9.27□□□□□ -0.93
CIITA-201ENST00000324288 C16orf45Q96MC5 204 aaPredicted RBP9.27□□□□□ -0.93
CIITA-201ENST00000324288 PDCP20941 246 aa9.27□□□□□ -0.93
CIITA-201ENST00000324288 CYB5RLQ6IPT4 315 aa9.27□□□□□ -0.93
CIITA-201ENST00000324288 ZNF830Q96NB3 372 aaPredicted RBP9.27□□□□□ -0.93
CIITA-201ENST00000324288 PSMD1Q99460 953 aa9.27□□□□□ -0.93
CIITA-201ENST00000324288 MNAT1P51948 309 aa9.27□□□□□ -0.93
CIITA-201ENST00000324288 LARP1BQ659C4 914 aaKnown RBP9.27□□□□□ -0.93
CIITA-201ENST00000324288 CNTLNQ9NXG0 1405 aa9.27□□□□□ -0.93
CIITA-201ENST00000324288 JAKMIP1Q96N16 626 aaKnown RBP9.27□□□□□ -0.93
CIITA-201ENST00000324288 NUTM2BA6NNL0 878 aaPredicted RBP9.27□□□□□ -0.93
CIITA-201ENST00000324288 NUTM2EB1AL46 878 aaPredicted RBP9.27□□□□□ -0.93
CIITA-201ENST00000324288 KLHL10Q6JEL2 608 aa9.27□□□□□ -0.93
CIITA-201ENST00000324288 NUTM2AQ8IVF1 878 aaPredicted RBP9.27□□□□□ -0.93
CIITA-201ENST00000324288 UPF3BQ9BZI7 483 aaKnown RBP9.27□□□□□ -0.93
CIITA-201ENST00000324288 SSFA2P28290 1259 aa9.26□□□□□ -0.93
CIITA-201ENST00000324288 CFAP100Q494V2 611 aa9.26□□□□□ -0.93
CIITA-201ENST00000324288 KRT85P78386 507 aa9.26□□□□□ -0.93
CIITA-201ENST00000324288 IFFO1Q0D2I5 559 aa9.26□□□□□ -0.93
CIITA-201ENST00000324288 SPATA32Q96LK8 384 aa9.26□□□□□ -0.93
CIITA-201ENST00000324288 CCDC148Q8NFR7 591 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms