RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 SBNO1A3KN83 1393 aa10.8□□□□□ -0.68
PDLIM5-201ENST00000317968 ANP32AP39687 249 aaKnown RBP10.8□□□□□ -0.68
PDLIM5-201ENST00000317968 TAF7LQ5H9L4 462 aa10.79□□□□□ -0.68
PDLIM5-201ENST00000317968 ARHGEF10O15013 1369 aa10.79□□□□□ -0.68
PDLIM5-201ENST00000317968 TATP17735 454 aaPredicted RBP10.79□□□□□ -0.68
PDLIM5-201ENST00000317968 IRX6P78412 446 aaPredicted RBP10.79□□□□□ -0.68
PDLIM5-201ENST00000317968 IFT57Q9NWB7 429 aa10.79□□□□□ -0.68
PDLIM5-201ENST00000317968 DDX19BQ9UMR2 479 aa10.79□□□□□ -0.68
PDLIM5-201ENST00000317968 FOXO3O43524 673 aa10.78□□□□□ -0.68
PDLIM5-201ENST00000317968 HMOX1P09601 288 aa10.78□□□□□ -0.68
PDLIM5-201ENST00000317968 SPG7Q9UQ90 795 aa10.78□□□□□ -0.68
PDLIM5-201ENST00000317968 USP6P35125 1406 aa10.78□□□□□ -0.68
PDLIM5-201ENST00000317968 SOS1Q07889 1333 aaPredicted RBP10.78□□□□□ -0.68
PDLIM5-201ENST00000317968 ANO8Q9HCE9 1232 aaPredicted RBP10.78□□□□□ -0.68
PDLIM5-201ENST00000317968 EMILIN1Q9Y6C2 1016 aa10.78□□□□□ -0.68
PDLIM5-201ENST00000317968 RIMS1Q86UR5 1692 aaKnown RBP10.77□□□□□ -0.68
PDLIM5-201ENST00000317968 RTL1A6NKG5 1358 aa10.77□□□□□ -0.69
PDLIM5-201ENST00000317968 HMMRO75330 724 aa10.77□□□□□ -0.69
PDLIM5-201ENST00000317968 RRS1Q15050 365 aaKnown RBP10.77□□□□□ -0.69
PDLIM5-201ENST00000317968 NLRP2Q9NX02 1062 aa10.77□□□□□ -0.69
PDLIM5-201ENST00000317968 CPS1P31327 1500 aa10.77□□□□□ -0.69
PDLIM5-201ENST00000317968 NUTM2BA6NNL0 878 aaPredicted RBP10.77□□□□□ -0.69
PDLIM5-201ENST00000317968 NUTM2EB1AL46 878 aaPredicted RBP10.77□□□□□ -0.69
PDLIM5-201ENST00000317968 NUTM2AQ8IVF1 878 aaPredicted RBP10.77□□□□□ -0.69
PDLIM5-201ENST00000317968 TCERG1O14776 1098 aaKnown RBP10.77□□□□□ -0.69
PDLIM5-201ENST00000317968 PRDM11Q9NQV5 511 aa10.76□□□□□ -0.69
PDLIM5-201ENST00000317968 IFT172Q9UG01 1749 aa10.76□□□□□ -0.69
PDLIM5-201ENST00000317968 ALDH1L2Q3SY69 923 aa10.76□□□□□ -0.69
PDLIM5-201ENST00000317968 BABAM1Q9NWV8 329 aa10.76□□□□□ -0.69
PDLIM5-201ENST00000317968 CENPQQ7L2Z9 268 aaPredicted RBP10.76□□□□□ -0.69
PDLIM5-201ENST00000317968 KLHL34Q8N239 644 aa10.76□□□□□ -0.69
PDLIM5-201ENST00000317968 USP31Q70CQ4 1352 aa10.75□□□□□ -0.69
PDLIM5-201ENST00000317968 DZIP1LQ8IYY4 767 aaKnown RBP10.75□□□□□ -0.69
PDLIM5-201ENST00000317968 TSPYL4Q9UJ04 414 aa10.75□□□□□ -0.69
PDLIM5-201ENST00000317968 IP6K1Q92551 441 aa10.75□□□□□ -0.69
PDLIM5-201ENST00000317968 CPSF1Q10570 1443 aaKnown RBP10.74□□□□□ -0.69
PDLIM5-201ENST00000317968 SYTL4Q96C24 671 aaPredicted RBP10.74□□□□□ -0.69
PDLIM5-201ENST00000317968 TMEM94Q12767 1356 aa10.74□□□□□ -0.69
PDLIM5-201ENST00000317968 HSP90B1P14625 803 aaKnown RBP10.74□□□□□ -0.69
PDLIM5-201ENST00000317968 NUTM2GQ5VZR2 741 aa10.74□□□□□ -0.69
PDLIM5-201ENST00000317968 CDK12Q9NYV4 1490 aaPredicted RBP10.74□□□□□ -0.69
PDLIM5-201ENST00000317968 SENP3-EIF4A1A0A087X0R7 540 aa10.74□□□□□ -0.69
PDLIM5-201ENST00000317968 GNAT3A8MTJ3 354 aa10.73□□□□□ -0.69
PDLIM5-201ENST00000317968 HSPA2P54652 639 aa10.73□□□□□ -0.69
PDLIM5-201ENST00000317968 DDX58O95786 925 aaKnown RBP10.73□□□□□ -0.69
PDLIM5-201ENST00000317968 CCDC30Q5VVM6 783 aa10.73□□□□□ -0.69
PDLIM5-201ENST00000317968 ITPRIPQ8IWB1 547 aa10.73□□□□□ -0.69
PDLIM5-201ENST00000317968 DCCP43146 1447 aa10.73□□□□□ -0.69
PDLIM5-201ENST00000317968 PRR36Q9H6K5 1346 aa10.73□□□□□ -0.69
PDLIM5-201ENST00000317968 ZNF530Q6P9A1 599 aaPredicted RBP10.72□□□□□ -0.69
PDLIM5-201ENST00000317968 CDCA7LQ96GN5 454 aa10.72□□□□□ -0.69
PDLIM5-201ENST00000317968 MAP3K19Q56UN5 1328 aa10.72□□□□□ -0.69
PDLIM5-201ENST00000317968 SIGLEC1Q9BZZ2 1709 aa10.72□□□□□ -0.69
PDLIM5-201ENST00000317968 DUSP27Q5VZP5 1158 aa10.72□□□□□ -0.69
PDLIM5-201ENST00000317968 GORABQ5T7V8 394 aa10.72□□□□□ -0.69
PDLIM5-201ENST00000317968 CDC42BPGQ6DT37 1551 aa10.72□□□□□ -0.69
PDLIM5-201ENST00000317968 UBR1Q8IWV7 1749 aa10.71□□□□□ -0.69
PDLIM5-201ENST00000317968 IL13P35225 146 aa10.71□□□□□ -0.69
PDLIM5-201ENST00000317968 EIF4A2Q14240 407 aaKnown RBP10.71□□□□□ -0.69
PDLIM5-201ENST00000317968 TWISTNBQ3B726 338 aaPredicted RBP10.71□□□□□ -0.69
PDLIM5-201ENST00000317968 GCP02774 474 aa10.71□□□□□ -0.69
PDLIM5-201ENST00000317968 B4GALNT3Q6L9W6 998 aa10.71□□□□□ -0.69
PDLIM5-201ENST00000317968 ARHGEF28Q8N1W1 1705 aaKnown RBP10.71□□□□□ -0.69
PDLIM5-201ENST00000317968 EXOSC9Q06265 439 aaKnown RBP10.71□□□□□ -0.69
PDLIM5-201ENST00000317968 LRRC59Q96AG4 307 aaKnown RBP10.71□□□□□ -0.7
PDLIM5-201ENST00000317968 ISY1Q9ULR0 285 aaKnown RBP10.71□□□□□ -0.7
PDLIM5-201ENST00000317968 USP32Q8NFA0 1604 aa10.71□□□□□ -0.7
PDLIM5-201ENST00000317968 C3P01024 1663 aa10.7□□□□□ -0.7
PDLIM5-201ENST00000317968 UBAP1LF5GYI3 381 aa10.7□□□□□ -0.7
PDLIM5-201ENST00000317968 DDRGK1Q96HY6 314 aa10.7□□□□□ -0.7
PDLIM5-201ENST00000317968 GPATCH3Q96I76 525 aa10.7□□□□□ -0.7
PDLIM5-201ENST00000317968 ARHGAP45Q92619 1136 aa10.69□□□□□ -0.7
PDLIM5-201ENST00000317968 RSPH6AQ9H0K4 717 aa10.69□□□□□ -0.7
PDLIM5-201ENST00000317968 HOXC9P31274 260 aa10.69□□□□□ -0.7
PDLIM5-201ENST00000317968 ANP32BQ92688 251 aaKnown RBP10.69□□□□□ -0.7
PDLIM5-201ENST00000317968 TAF7Q15545 349 aaPredicted RBP10.69□□□□□ -0.7
PDLIM5-201ENST00000317968 SLAIN2Q9P270 581 aa10.69□□□□□ -0.7
PDLIM5-201ENST00000317968 FRAT2O75474 233 aaPredicted RBP10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 HSP90AB2PQ58FF8 381 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 PNPLA6Q8IY17 1366 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 PTPRUQ92729 1446 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 TOM1L2Q6ZVM7 507 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 NEXNQ0ZGT2 675 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 NOL10Q9BSC4 688 aaKnown RBP10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 KCNJ4P48050 445 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 FGD1P98174 961 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 CLUAP1Q96AJ1 413 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 CHMP3Q9Y3E7 222 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 ANKRD24Q8TF21 1146 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 CRBNQ96SW2 442 aa10.68□□□□□ -0.7
PDLIM5-201ENST00000317968 ATF7IPQ6VMQ6 1270 aa10.67□□□□□ -0.7
PDLIM5-201ENST00000317968 FANCIQ9NVI1 1328 aa10.67□□□□□ -0.7
PDLIM5-201ENST00000317968 GNAI3P08754 354 aa10.67□□□□□ -0.7
PDLIM5-201ENST00000317968 ZC3H6P61129 1189 aaKnown RBP10.67□□□□□ -0.7
PDLIM5-201ENST00000317968 CCT4P50991 539 aaKnown RBP10.66□□□□□ -0.7
PDLIM5-201ENST00000317968 RARSP54136 660 aaKnown RBP10.66□□□□□ -0.7
PDLIM5-201ENST00000317968 EXOC6Q8TAG9 804 aa10.66□□□□□ -0.7
PDLIM5-201ENST00000317968 CDCA7Q9BWT1 371 aaPredicted RBP10.66□□□□□ -0.7
PDLIM5-201ENST00000317968 KNDC1Q76NI1 1749 aa10.66□□□□□ -0.7
PDLIM5-201ENST00000317968 AKAP4Q5JQC9 854 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms