RNA–Protein interactions for RNA: ENST00000315962.8

TRIM55-202, Transcript of tripartite motif containing 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM55, Length 2,914 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-202ENST00000315962 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.78□□□□□ -0.84
TRIM55-202ENST00000315962 SMC4Q9NTJ3 1288 aa9.78□□□□□ -0.84
TRIM55-202ENST00000315962 DLC1Q96QB1 1528 aa9.77□□□□□ -0.84
TRIM55-202ENST00000315962 TECPR2O15040 1411 aa9.77□□□□□ -0.84
TRIM55-202ENST00000315962 ARXQ96QS3 562 aa9.77□□□□□ -0.84
TRIM55-202ENST00000315962 MYH16Q9H6N6 1097 aa9.77□□□□□ -0.84
TRIM55-202ENST00000315962 PROSER2Q86WR7 435 aaPredicted RBP9.77□□□□□ -0.85
TRIM55-202ENST00000315962 SHPRHQ149N8 1683 aa9.77□□□□□ -0.85
TRIM55-202ENST00000315962 RIMS1Q86UR5 1692 aaKnown RBP9.77□□□□□ -0.85
TRIM55-202ENST00000315962 IGHDP01880 384 aa9.76□□□□□ -0.85
TRIM55-202ENST00000315962 SSH1Q8WYL5 1049 aa9.76□□□□□ -0.85
TRIM55-202ENST00000315962 PNPLA6Q8IY17 1366 aa9.76□□□□□ -0.85
TRIM55-202ENST00000315962 PHF8Q9UPP1 1060 aa9.76□□□□□ -0.85
TRIM55-202ENST00000315962 MED14O60244 1454 aa9.76□□□□□ -0.85
TRIM55-202ENST00000315962 USP6P35125 1406 aa9.75□□□□□ -0.85
TRIM55-202ENST00000315962 NOB1Q9ULX3 412 aaKnown RBP9.75□□□□□ -0.85
TRIM55-202ENST00000315962 COL3A1P02461 1466 aaPredicted RBP9.74□□□□□ -0.85
TRIM55-202ENST00000315962 ARHGAP23Q9P227 1491 aa9.74□□□□□ -0.85
TRIM55-202ENST00000315962 NFE2L2Q16236 605 aa9.74□□□□□ -0.85
TRIM55-202ENST00000315962 FTSJ3Q8IY81 847 aaKnown RBP9.74□□□□□ -0.85
TRIM55-202ENST00000315962 NFKBIBQ15653 356 aa9.74□□□□□ -0.85
TRIM55-202ENST00000315962 CCDC27Q2M243 656 aa9.74□□□□□ -0.85
TRIM55-202ENST00000315962 SLIT1O75093 1534 aa9.73□□□□□ -0.85
TRIM55-202ENST00000315962 NECTIN2Q92692 538 aa9.73□□□□□ -0.85
TRIM55-202ENST00000315962 MBIPQ9NS73 344 aa9.73□□□□□ -0.85
TRIM55-202ENST00000315962 IQSEC2Q5JU85 1478 aa9.73□□□□□ -0.85
TRIM55-202ENST00000315962 CEP170BQ9Y4F5 1589 aaPredicted RBP9.73□□□□□ -0.85
TRIM55-202ENST00000315962 ITPRIPQ8IWB1 547 aa9.73□□□□□ -0.85
TRIM55-202ENST00000315962 C8orf58Q8NAV2 365 aa9.73□□□□□ -0.85
TRIM55-202ENST00000315962 EYA1Q99502 592 aa9.73□□□□□ -0.85
TRIM55-202ENST00000315962 CABLES1Q8TDN4 633 aa9.72□□□□□ -0.85
TRIM55-202ENST00000315962 FRAT2O75474 233 aaPredicted RBP9.72□□□□□ -0.85
TRIM55-202ENST00000315962 TRIM27P14373 513 aa9.72□□□□□ -0.85
TRIM55-202ENST00000315962 LRRC59Q96AG4 307 aaKnown RBP9.72□□□□□ -0.85
TRIM55-202ENST00000315962 PCDHB15Q9Y5E8 787 aa9.72□□□□□ -0.85
TRIM55-202ENST00000315962 EIF5BO60841 1220 aaKnown RBP9.72□□□□□ -0.85
TRIM55-202ENST00000315962 PNNQ9H307 717 aaKnown RBP9.72□□□□□ -0.85
TRIM55-202ENST00000315962 ZC3H6P61129 1189 aaKnown RBP9.71□□□□□ -0.85
TRIM55-202ENST00000315962 MTHFSDQ2M296 383 aaKnown RBP9.71□□□□□ -0.85
TRIM55-202ENST00000315962 NGEFQ8N5V2 710 aa9.71□□□□□ -0.85
TRIM55-202ENST00000315962 CDC42BPGQ6DT37 1551 aa9.71□□□□□ -0.85
TRIM55-202ENST00000315962 USP32Q8NFA0 1604 aa9.71□□□□□ -0.86
TRIM55-202ENST00000315962 LRRC7Q96NW7 1537 aa9.71□□□□□ -0.86
TRIM55-202ENST00000315962 C1orf115Q9H7X2 142 aa9.7□□□□□ -0.86
TRIM55-202ENST00000315962 MAP2P11137 1827 aaKnown RBP9.7□□□□□ -0.86
TRIM55-202ENST00000315962 HOXC9P31274 260 aa9.69□□□□□ -0.86
TRIM55-202ENST00000315962 ZKSCAN2Q63HK3 967 aa9.69□□□□□ -0.86
TRIM55-202ENST00000315962 DZIP1LQ8IYY4 767 aaKnown RBP9.69□□□□□ -0.86
TRIM55-202ENST00000315962 TMEM57Q8N5G2 664 aa9.69□□□□□ -0.86
TRIM55-202ENST00000315962 DIP2AQ14689 1571 aa9.69□□□□□ -0.86
TRIM55-202ENST00000315962 AATKQ6ZMQ8 1374 aa9.69□□□□□ -0.86
TRIM55-202ENST00000315962 NPHP4O75161 1426 aaPredicted RBP9.69□□□□□ -0.86
TRIM55-202ENST00000315962 RGPD8O14715 1765 aaPredicted RBP9.69□□□□□ -0.86
TRIM55-202ENST00000315962 MS4A1P11836 297 aa9.69□□□□□ -0.86
TRIM55-202ENST00000315962 GSE1Q14687 1217 aa9.69□□□□□ -0.86
TRIM55-202ENST00000315962 TWISTNBQ3B726 338 aaPredicted RBP9.69□□□□□ -0.86
TRIM55-202ENST00000315962 ZNF428Q96B54 188 aa9.69□□□□□ -0.86
TRIM55-202ENST00000315962 SLKQ9H2G2 1235 aaPredicted RBP9.69□□□□□ -0.86
TRIM55-202ENST00000315962 VAMP4O75379 141 aa9.68□□□□□ -0.86
TRIM55-202ENST00000315962 PDE3AQ14432 1141 aa9.68□□□□□ -0.86
TRIM55-202ENST00000315962 C8orf34Q49A92 452 aa9.68□□□□□ -0.86
TRIM55-202ENST00000315962 SPRYD3Q8NCJ5 442 aa9.68□□□□□ -0.86
TRIM55-202ENST00000315962 PTCH1Q13635 1447 aa9.68□□□□□ -0.86
TRIM55-202ENST00000315962 ATF7IPQ6VMQ6 1270 aa9.68□□□□□ -0.86
TRIM55-202ENST00000315962 KDM2BQ8NHM5 1336 aa9.68□□□□□ -0.86
TRIM55-202ENST00000315962 OVOS2A0A0J9YW53 1432 aa9.68□□□□□ -0.86
TRIM55-202ENST00000315962 OVOS2Q6IE36 1432 aa9.68□□□□□ -0.86
TRIM55-202ENST00000315962 NBPF6Q5VWK0 638 aa9.67□□□□□ -0.86
TRIM55-202ENST00000315962 NBPF4Q96M43 638 aa9.67□□□□□ -0.86
TRIM55-202ENST00000315962 TTC21AQ8NDW8 1320 aa9.67□□□□□ -0.86
TRIM55-202ENST00000315962 ATF3P18847 181 aa9.67□□□□□ -0.86
TRIM55-202ENST00000315962 RTF1Q92541 710 aaKnown RBP9.67□□□□□ -0.86
TRIM55-202ENST00000315962 AXIN2Q9Y2T1 843 aa9.67□□□□□ -0.86
TRIM55-202ENST00000315962 SSH2Q76I76 1423 aa9.66□□□□□ -0.86
TRIM55-202ENST00000315962 SEC24BO95487 1268 aa9.66□□□□□ -0.86
TRIM55-202ENST00000315962 GCP02774 474 aa9.66□□□□□ -0.86
TRIM55-202ENST00000315962 GNAI1P63096 354 aa9.66□□□□□ -0.86
TRIM55-202ENST00000315962 CENPQQ7L2Z9 268 aaPredicted RBP9.66□□□□□ -0.86
TRIM55-202ENST00000315962 KRT28Q7Z3Y7 464 aa9.66□□□□□ -0.86
TRIM55-202ENST00000315962 CFAP44Q96MT7 982 aa9.66□□□□□ -0.86
TRIM55-202ENST00000315962 MVPQ14764 893 aaKnown RBP9.66□□□□□ -0.86
TRIM55-202ENST00000315962 CHRNA2Q15822 529 aa9.66□□□□□ -0.86
TRIM55-202ENST00000315962 KIF20BQ96Q89 1820 aa9.66□□□□□ -0.86
TRIM55-202ENST00000315962 KDM4FA0A1W2PPD8 638 aa9.66□□□□□ -0.86
TRIM55-202ENST00000315962 DDRGK1Q96HY6 314 aa9.66□□□□□ -0.86
TRIM55-202ENST00000315962 CDK12Q9NYV4 1490 aaPredicted RBP9.65□□□□□ -0.86
TRIM55-202ENST00000315962 SETD1BQ9UPS6 1966 aaKnown RBP9.65□□□□□ -0.86
TRIM55-202ENST00000315962 C19orf44Q9H6X5 657 aa9.65□□□□□ -0.86
TRIM55-202ENST00000315962 FLT4P35916 1363 aa9.65□□□□□ -0.86
TRIM55-202ENST00000315962 TMEM94Q12767 1356 aa9.65□□□□□ -0.86
TRIM55-202ENST00000315962 FAM161AQ3B820 660 aa9.65□□□□□ -0.87
TRIM55-202ENST00000315962 UBE2Q2Q8WVN8 375 aa9.65□□□□□ -0.87
TRIM55-202ENST00000315962 TSPYL4Q9UJ04 414 aa9.65□□□□□ -0.87
TRIM55-202ENST00000315962 IFT57Q9NWB7 429 aa9.64□□□□□ -0.87
TRIM55-202ENST00000315962 LGR6Q9HBX8 967 aa9.64□□□□□ -0.87
TRIM55-202ENST00000315962 USP31Q70CQ4 1352 aa9.64□□□□□ -0.87
TRIM55-202ENST00000315962 F6X3S4 739 aa9.63□□□□□ -0.87
TRIM55-202ENST00000315962 APBB1O00213 710 aa9.63□□□□□ -0.87
TRIM55-202ENST00000315962 SLC4A10Q6U841 1118 aa9.63□□□□□ -0.87
TRIM55-202ENST00000315962 MPRIPQ6WCQ1 1025 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms