RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 NME9Q86XW9 330 aa27.52■■■□□ 2
LIME1-201ENST00000309546 AXIN2Q9Y2T1 843 aa27.52■■■□□ 2
LIME1-201ENST00000309546 TRIM37O94972 964 aa27.51■■□□□ 1.99
LIME1-201ENST00000309546 TESK2Q96S53 571 aa27.51■■□□□ 1.99
LIME1-201ENST00000309546 A0A1W2PP64 1363 aa27.5■■□□□ 1.99
LIME1-201ENST00000309546 TERF2IPQ9NYB0 399 aa27.5■■□□□ 1.99
LIME1-201ENST00000309546 EDC4Q6P2E9 1401 aaKnown RBP27.5■■□□□ 1.99
LIME1-201ENST00000309546 LRRC37A3O60309 1634 aa27.49■■□□□ 1.99
LIME1-201ENST00000309546 WDR17Q8IZU2 1322 aa27.49■■□□□ 1.99
LIME1-201ENST00000309546 LTN1O94822 1766 aa27.49■■□□□ 1.99
LIME1-201ENST00000309546 USP31Q70CQ4 1352 aa27.48■■□□□ 1.99
LIME1-201ENST00000309546 CSB-PGBD3P0DP91 1061 aa27.48■■□□□ 1.99
LIME1-201ENST00000309546 PCGF6Q9BYE7 350 aa27.48■■□□□ 1.99
LIME1-201ENST00000309546 PUS7Q96PZ0 661 aaKnown RBP27.47■■□□□ 1.99
LIME1-201ENST00000309546 DISP2A7MBM2 1401 aa27.47■■□□□ 1.99
LIME1-201ENST00000309546 USP47Q96K76 1375 aa27.47■■□□□ 1.99
LIME1-201ENST00000309546 ABCC6O95255 1503 aa27.45■■□□□ 1.98
LIME1-201ENST00000309546 NINLQ9Y2I6 1382 aa27.44■■□□□ 1.98
LIME1-201ENST00000309546 PSDA5PKW4 1024 aaPredicted RBP27.42■■□□□ 1.98
LIME1-201ENST00000309546 SLC24A1O60721 1099 aa27.42■■□□□ 1.98
LIME1-201ENST00000309546 APBA3O96018 575 aa27.42■■□□□ 1.98
LIME1-201ENST00000309546 EZH2Q15910 746 aaKnown RBP27.42■■□□□ 1.98
LIME1-201ENST00000309546 DDB1Q16531 1140 aa27.42■■□□□ 1.98
LIME1-201ENST00000309546 PEAK1Q9H792 1746 aa27.4■■□□□ 1.98
LIME1-201ENST00000309546 OVOS2A0A0G2JMS6 1433 aa27.4■■□□□ 1.98
LIME1-201ENST00000309546 OVOS2A0A0J9YW53 1432 aa27.4■■□□□ 1.98
LIME1-201ENST00000309546 OVOS2Q6IE36 1432 aa27.4■■□□□ 1.98
LIME1-201ENST00000309546 CARD10Q9BWT7 1032 aa27.39■■□□□ 1.98
LIME1-201ENST00000309546 TMF1P82094 1093 aa27.38■■□□□ 1.97
LIME1-201ENST00000309546 CAMKK2Q96RR4 588 aa27.37■■□□□ 1.97
LIME1-201ENST00000309546 SBF2Q86WG5 1849 aa27.37■■□□□ 1.97
LIME1-201ENST00000309546 CDCA7Q9BWT1 371 aaPredicted RBP27.36■■□□□ 1.97
LIME1-201ENST00000309546 RREB1Q92766 1687 aa27.36■■□□□ 1.97
LIME1-201ENST00000309546 CCDC7Q96M83 1385 aa27.35■■□□□ 1.97
LIME1-201ENST00000309546 CLSPNQ9HAW4 1339 aa27.35■■□□□ 1.97
LIME1-201ENST00000309546 ANKRD36BQ8N2N9 1353 aa27.35■■□□□ 1.97
LIME1-201ENST00000309546 SRCAPQ6ZRS2 3230 aa27.34■■□□□ 1.97
LIME1-201ENST00000309546 PARD3Q8TEW0 1356 aa27.34■■□□□ 1.97
LIME1-201ENST00000309546 C11orf95C9JLR9 678 aaPredicted RBP27.33■■□□□ 1.97
LIME1-201ENST00000309546 ERBB3P21860 1342 aa27.33■■□□□ 1.97
LIME1-201ENST00000309546 NUP188Q5SRE5 1749 aa27.33■■□□□ 1.96
LIME1-201ENST00000309546 R3HDM1Q15032 1099 aaKnown RBP27.32■■□□□ 1.96
LIME1-201ENST00000309546 NLRP2Q9NX02 1062 aa27.32■■□□□ 1.96
LIME1-201ENST00000309546 TIMELESSQ9UNS1 1208 aa27.32■■□□□ 1.96
LIME1-201ENST00000309546 LRP5O75197 1615 aa27.31■■□□□ 1.96
LIME1-201ENST00000309546 ANKRD24Q8TF21 1146 aa27.31■■□□□ 1.96
LIME1-201ENST00000309546 COG3Q96JB2 828 aa27.31■■□□□ 1.96
LIME1-201ENST00000309546 MARCH10Q8NA82 808 aaPredicted RBP27.3■■□□□ 1.96
LIME1-201ENST00000309546 TNS2Q63HR2 1409 aa27.28■■□□□ 1.96
LIME1-201ENST00000309546 EXOC5O00471 708 aa27.28■■□□□ 1.96
LIME1-201ENST00000309546 CDCA8Q53HL2 280 aa27.27■■□□□ 1.96
LIME1-201ENST00000309546 KIF20BQ96Q89 1820 aa27.27■■□□□ 1.96
LIME1-201ENST00000309546 MYOM1P52179 1685 aa27.25■■□□□ 1.95
LIME1-201ENST00000309546 FAM208AQ9UK61 1670 aaKnown RBP27.25■■□□□ 1.95
LIME1-201ENST00000309546 RGPD3A6NKT7 1758 aaPredicted RBP27.25■■□□□ 1.95
LIME1-201ENST00000309546 RGPD4Q7Z3J3 1758 aa27.25■■□□□ 1.95
LIME1-201ENST00000309546 LTV1Q96GA3 475 aaPredicted RBP27.24■■□□□ 1.95
LIME1-201ENST00000309546 FBLN1P23142 703 aa27.23■■□□□ 1.95
LIME1-201ENST00000309546 PTF1AQ7RTS3 328 aa27.23■■□□□ 1.95
LIME1-201ENST00000309546 IP6K1Q92551 441 aa27.23■■□□□ 1.95
LIME1-201ENST00000309546 MAP3K19Q56UN5 1328 aa27.22■■□□□ 1.95
LIME1-201ENST00000309546 IL2RBP14784 551 aa27.22■■□□□ 1.95
LIME1-201ENST00000309546 CCER1Q8TC90 406 aaPredicted RBP27.22■■□□□ 1.95
LIME1-201ENST00000309546 GGNBP2Q9H3C7 697 aa27.22■■□□□ 1.95
LIME1-201ENST00000309546 BCL9O00512 1426 aa27.22■■□□□ 1.95
LIME1-201ENST00000309546 NBPF14Q5TI25 921 aa27.21■■□□□ 1.95
LIME1-201ENST00000309546 BCL11BQ9C0K0 894 aaPredicted RBP27.21■■□□□ 1.95
LIME1-201ENST00000309546 AMPHP49418 695 aa27.2■■□□□ 1.94
LIME1-201ENST00000309546 FYB1O15117 783 aa27.19■■□□□ 1.94
LIME1-201ENST00000309546 RGPD2P0DJD1 1756 aa27.19■■□□□ 1.94
LIME1-201ENST00000309546 HOXC9P31274 260 aa27.18■■□□□ 1.94
LIME1-201ENST00000309546 NHSQ6T4R5 1651 aa27.17■■□□□ 1.94
LIME1-201ENST00000309546 PLSCR1O15162 318 aa27.16■■□□□ 1.94
LIME1-201ENST00000309546 RRS1Q15050 365 aaKnown RBP27.16■■□□□ 1.94
LIME1-201ENST00000309546 NSD3Q9BZ95 1437 aa27.15■■□□□ 1.94
LIME1-201ENST00000309546 RTL1A6NKG5 1358 aa27.14■■□□□ 1.94
LIME1-201ENST00000309546 POLR3GLQ9BT43 218 aa27.14■■□□□ 1.94
LIME1-201ENST00000309546 KAT6BQ8WYB5 2073 aa27.13■■□□□ 1.93
LIME1-201ENST00000309546 ACSBG1Q96GR2 724 aa27.13■■□□□ 1.93
LIME1-201ENST00000309546 KCNQ2O43526 872 aa27.11■■□□□ 1.93
LIME1-201ENST00000309546 CARD14Q9BXL6 1004 aa27.11■■□□□ 1.93
LIME1-201ENST00000309546 SMG6Q86US8 1419 aaKnown RBP27.08■■□□□ 1.93
LIME1-201ENST00000309546 BTAF1O14981 1849 aa27.08■■□□□ 1.93
LIME1-201ENST00000309546 ANO8Q9HCE9 1232 aaPredicted RBP27.07■■□□□ 1.92
LIME1-201ENST00000309546 EIF4G2P78344 907 aaKnown RBP eCLIP27.06■■□□□ 1.92
LIME1-201ENST00000309546 DDX54Q8TDD1 881 aaKnown RBP27.06■■□□□ 1.92
LIME1-201ENST00000309546 PROM2Q8N271 834 aa27.05■■□□□ 1.92
LIME1-201ENST00000309546 MEGF6O75095 1541 aa27.05■■□□□ 1.92
LIME1-201ENST00000309546 SHANK3Q9BYB0 1731 aa27.04■■□□□ 1.92
LIME1-201ENST00000309546 HSPA5P11021 654 aaKnown RBP27.04■■□□□ 1.92
LIME1-201ENST00000309546 TXNRD1Q16881 649 aa27.04■■□□□ 1.92
LIME1-201ENST00000309546 FLT4P35916 1363 aa27.03■■□□□ 1.92
LIME1-201ENST00000309546 USHBP1Q8N6Y0 703 aa27.03■■□□□ 1.92
LIME1-201ENST00000309546 DOT1LQ8TEK3 1739 aa27.02■■□□□ 1.92
LIME1-201ENST00000309546 HSP90AB2PQ58FF8 381 aa27.02■■□□□ 1.92
LIME1-201ENST00000309546 INSRP06213 1382 aa27.01■■□□□ 1.91
LIME1-201ENST00000309546 NBPF6Q5VWK0 638 aa27.01■■□□□ 1.91
LIME1-201ENST00000309546 NBPF4Q96M43 638 aa27.01■■□□□ 1.91
LIME1-201ENST00000309546 CASZ1Q86V15 1759 aa27■■□□□ 1.91
LIME1-201ENST00000309546 CGNL1Q0VF96 1302 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms