RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 TUBB2AQ13885 445 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 TUBB2BQ9BVA1 445 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 CBFA2T2O43439 604 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 C1orf141Q5JVX7 400 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 CCDC146Q8IYE0 955 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 IGSF3O75054 1194 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 FGFR1OPO95684 399 aaKnown RBP4.79□□□□□ -1.64
USH2A-201ENST00000307340 CEP131Q9UPN4 1083 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 ERLIN1O75477 346 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 CTNNA3Q9UI47 895 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 EIF4G3O43432 1585 aaKnown RBP4.79□□□□□ -1.64
USH2A-201ENST00000307340 CEP128Q6ZU80 1094 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 SCAND2PQ9GZW5 306 aaPredicted RBP4.79□□□□□ -1.64
USH2A-201ENST00000307340 KANK3Q6NY19 840 aa4.79□□□□□ -1.64
USH2A-201ENST00000307340 NAIPQ13075 1403 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 GOLGA6L10A6NI86 522 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 FRAT1Q92837 279 aaPredicted RBP4.78□□□□□ -1.64
USH2A-201ENST00000307340 CLUAP1Q96AJ1 413 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 ITPRIPQ8IWB1 547 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 ARHGAP45Q92619 1136 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 SYNMO15061 1565 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 JAKMIP3Q5VZ66 844 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 IQSEC3Q9UPP2 1182 aaPredicted RBP4.78□□□□□ -1.64
USH2A-201ENST00000307340 GBP2P32456 591 aaPredicted RBP4.78□□□□□ -1.64
USH2A-201ENST00000307340 RBM27Q9P2N5 1060 aaKnown RBP4.78□□□□□ -1.64
USH2A-201ENST00000307340 U3KPZ7 1027 aaPredicted RBP4.78□□□□□ -1.64
USH2A-201ENST00000307340 GTF2E1P29083 439 aaPredicted RBP4.78□□□□□ -1.64
USH2A-201ENST00000307340 ANAPC15P60006 121 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 KCNH5Q8NCM2 988 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 RUFY1Q96T51 708 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 CCDC192P0DO97 292 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 RTL1A6NKG5 1358 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 WDR33Q9C0J8 1336 aaKnown RBP4.78□□□□□ -1.64
USH2A-201ENST00000307340 STIM1Q13586 685 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 PPP2R5BQ15173 497 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 USH1CQ9Y6N9 552 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 ZSCAN31Q96LW9 406 aaPredicted RBP4.78□□□□□ -1.64
USH2A-201ENST00000307340 SRRTQ9BXP5 876 aaKnown RBP4.78□□□□□ -1.64
USH2A-201ENST00000307340 CCDC83Q8IWF9 413 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 PAXBP1Q9Y5B6 917 aa4.78□□□□□ -1.64
USH2A-201ENST00000307340 ABCC10Q5T3U5 1492 aa4.78□□□□□ -1.65
USH2A-201ENST00000307340 PSME1Q06323 249 aa4.78□□□□□ -1.65
USH2A-201ENST00000307340 RPAP2Q8IXW5 612 aaPredicted RBP4.78□□□□□ -1.65
USH2A-201ENST00000307340 MAPKBP1O60336 1514 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 CTR9Q6PD62 1173 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 SASS6Q6UVJ0 657 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 KIF24Q5T7B8 1368 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 GORABQ5T7V8 394 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 SH2B1Q9NRF2 756 aaPredicted RBP4.77□□□□□ -1.65
USH2A-201ENST00000307340 YEATS2Q9ULM3 1422 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 GSDMDP57764 484 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 RAB34Q9BZG1 259 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 TERF1P54274 439 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 CCDC73Q6ZRK6 1079 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 IMMTQ16891 758 aaKnown RBP4.77□□□□□ -1.65
USH2A-201ENST00000307340 PLVAPQ9BX97 442 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 DDX49Q9Y6V7 483 aaKnown RBP4.77□□□□□ -1.65
USH2A-201ENST00000307340 GNL3LQ9NVN8 582 aaKnown RBP4.77□□□□□ -1.65
USH2A-201ENST00000307340 DIAPH1O60610 1272 aaKnown RBP4.77□□□□□ -1.65
USH2A-201ENST00000307340 LUZP1Q86V48 1076 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 CCDC191Q8NCU4 936 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 MAGI2Q86UL8 1455 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 CEP152O94986 1710 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 PIK3C2GO75747 1445 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 RGL3Q3MIN7 710 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 SF3A1Q15459 793 aaKnown RBP4.77□□□□□ -1.65
USH2A-201ENST00000307340 STK24Q9Y6E0 443 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 PPP1R12BO60237 982 aaPredicted RBP4.77□□□□□ -1.65
USH2A-201ENST00000307340 CDC45O75419 566 aa4.77□□□□□ -1.65
USH2A-201ENST00000307340 TEFQ10587 303 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 OLFM4Q6UX06 510 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 CCDC178Q5BJE1 867 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 TTC5Q8N0Z6 440 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 SMTNL1A8MU46 457 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 ANKRD36BQ8N2N9 1353 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 GOLIM4O00461 696 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 FILIP1LQ4L180 1135 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 LRRC27Q9C0I9 530 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 TTC12Q9H892 705 aaPredicted RBP4.76□□□□□ -1.65
USH2A-201ENST00000307340 VIRMAQ69YN4 1812 aaKnown RBP4.76□□□□□ -1.65
USH2A-201ENST00000307340 AMOTQ4VCS5 1084 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 CLASRPQ8N2M8 674 aaKnown RBP4.76□□□□□ -1.65
USH2A-201ENST00000307340 V9GYY5 206 aaPredicted RBP4.76□□□□□ -1.65
USH2A-201ENST00000307340 AMPHP49418 695 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 HMG20BQ9P0W2 317 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 PREX2Q70Z35 1606 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 PODNQ7Z5L7 613 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 KINO60870 393 aaKnown RBP4.76□□□□□ -1.65
USH2A-201ENST00000307340 PRIMPOLQ96LW4 560 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 CCDC172P0C7W6 258 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 TEX13AQ9BXU3 409 aaPredicted RBP4.76□□□□□ -1.65
USH2A-201ENST00000307340 TET3O43151 1660 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 CGNQ9P2M7 1197 aaKnown RBP4.76□□□□□ -1.65
USH2A-201ENST00000307340 CPLX1O14810 134 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 RALYLQ86SE5 291 aaKnown RBP4.76□□□□□ -1.65
USH2A-201ENST00000307340 ZNF397Q8NF99 534 aaPredicted RBP4.76□□□□□ -1.65
USH2A-201ENST00000307340 SPHKAPQ2M3C7 1700 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 SEMA3FQ13275 785 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 CROCCP2Q86T23 111 aa4.76□□□□□ -1.65
USH2A-201ENST00000307340 USP37Q86T82 979 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms